Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03050 and BPUM_1164
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:34
# Commandline: needle
# -asequence dna-align/BSNT_03050___ggt.1.24716.seq
# -bsequence dna-align/BPUM_1164___ggt.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03050___ggt-BPUM_1164___ggt.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03050___ggt-BPUM_1164___ggt.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03050___ggt
# 2: BPUM_1164___ggt
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1852
# Identity: 1244/1852 (67.2%)
# Similarity: 1244/1852 (67.2%)
# Gaps: 188/1852 (10.2%)
# Score: 3980.5
#
#
#=======================================
BSNT_03050___ 1 ATGAAAAGAACGTGGAACGTCTGTTTAAC------------AGCTCTGCT 38
||||||.| |.|.|.|.|||| |..||||||
BPUM_1164___g 1 ATGAAACG---------CATTTCTCTAACTATTTTGTCCATATGTCTGCT 41
BSNT_03050___ 39 TAGTGTT--------------CTGTTAGTCGCTGGAAGTGTCCCTTTTCA 74
| ||.|| ||||.|||| || |||.||
BPUM_1164___g 42 T-GTTTTCTCGTTTTTTCTGCCTGTCAGTC------AG-GTCACT----- 78
BSNT_03050___ 75 CGCGGAAGCTAAAAAACCGCCCAAAAGCTACGATGAGTACAAACAAGTAG 124
||.||..||||.| |||.| ||..||||||
BPUM_1164___g 79 -------GCAAACGAACCTC------------ATGGG---AATAAAGTAG 106
BSNT_03050___ 125 ATGTTGGAAAAGACGGCATGGTTGCGACCGCACATGCTCTTGCTTCTGAA 174
.||||||.|||||.||||||||.||.||.||.|||.|.|||||.||.||.
BPUM_1164___g 107 CTGTTGGGAAAGATGGCATGGTGGCTACTGCCCATCCGCTTGCATCAGAG 156
BSNT_03050___ 175 ATCGGTGCTGATGTGCTGAAAAAAGGAGGAAATGCTATTGACGCAGCGGT 224
.|.|||||.|||||..|.||.|||||.|||||||||.|||||||.||.||
BPUM_1164___g 157 GTGGGTGCAGATGTATTAAAGAAAGGTGGAAATGCTGTTGACGCTGCTGT 206
BSNT_03050___ 225 TGCCATTCAATTTGCACTCAATGTAACAGAGCCGATGATGTCAGGTATTG 274
|||.||.||.|..|||||||||||.||||||||.||||||||.||.||||
BPUM_1164___g 207 TGCTATCCAGTACGCACTCAATGTGACAGAGCCTATGATGTCTGGAATTG 256
BSNT_03050___ 275 GCGGCGGCGGTTTTATGATGGTGTATGACGGAAAAACGAAGGATACAACG 324
|.|||||.||.|||||||||||||||||.||.||.||.||.||.|||.|.
BPUM_1164___g 257 GTGGCGGAGGATTTATGATGGTGTATGATGGGAAGACAAAAGAAACATCT 306
BSNT_03050___ 325 ATAATCGACAGCCGTGAGCGTGCTCCAGCAGGCGCAACTCCTGATATGTT 374
||.|||.|.||.||.||..|.||.|||..||||||.||.||.||||||||
BPUM_1164___g 307 ATCATCAATAGTCGAGAAAGAGCACCACAAGGCGCGACACCAGATATGTT 356
BSNT_03050___ 375 TCTGGAC-GAAAACGGCAAAGCAATTCCTTTCTCTGAACG-TGTAACAAA 422
| |..|| ||..|.|||||||..|||||.||..|.||.|| |.| |||.|
BPUM_1164___g 357 T-TTAACAGATGATGGCAAAGTCATTCCGTTTGCAGAGCGATCT-ACACA 404
BSNT_03050___ 423 AGGTACTGCCGTTGGTGTTCCAGGCACTCTGAAAGGGCTGGAAGAAGCCT 472
.||||.|||.||||||||||||||.|||.|.|||||.||.||||..||.|
BPUM_1164___g 405 CGGTAATGCTGTTGGTGTTCCAGGGACTGTAAAAGGTCTTGAAGCGGCAT 454
BSNT_03050___ 473 TGGACAAATGGGGAACCCGTTCGATGAAGCTATTAATTACCCCTTCTATT 522
|.||.||.|||||||||||.|||||||||..||||||.|..|||||.|||
BPUM_1164___g 455 TAGATAAGTGGGGAACCCGCTCGATGAAGGAATTAATCAAGCCTTCCATT 504
BSNT_03050___ 523 AAACTCGCTGAAAAAGGCTTTCCGATTGATTCGGTGTTGGCAGATGCCAT 572
.|.||.||.||..|.||.|||...||.|||||.||..|||||.|.|||||
BPUM_1164___g 505 CAGCTGGCAGAGGATGGATTTGAAATCGATTCTGTCCTGGCAAAAGCCAT 554
BSNT_03050___ 573 TTCTGATTATC-AGGAAAAACTTTCACG--GACTGCCGCA-----AAAGA 614
|...|||.||| ||||||| ||.|.| .||.|||||| ||
BPUM_1164___g 555 TGACGATCATCAAGGAAAA---TTGAAGAAAACGGCCGCAGCGCCAA--- 598
BSNT_03050___ 615 TGTATTTTTACCAAATGGCGAACCGCTTAAAGAAGGAGATACCCTTATTC 664
|.|||.|.|||||||...|.|||||.|||||||||||...|||..|||
BPUM_1164___g 599 --TCTTTCTTCCAAATGATCAGCCGCTCAAAGAAGGAGACCTCCTCGTTC 646
BSNT_03050___ 665 A-AAAGGATTTGGCTAAAACATTTAAGCTTATTCGC-TCCAAAGGCACTG 712
| ..||| |.|.||.|||||||||||.||.||| || ...|||||.|...
BPUM_1164___g 647 AGCCAGG-TCTTGCAAAAACATTTAAACTCATT-GCGAAAAAAGGAAGCA 694
BSNT_03050___ 713 ACGCTTTTTATAAAGGAAAATTCGCCAAGACGCTTTCTGACACTGTCCAG 762
|.||.||||||.||||||||.|.||.|||.|.|||.|..|.||.|||||.
BPUM_1164___g 695 AAGCATTTTATGAAGGAAAAGTAGCAAAGGCACTTGCAAATACAGTCCAA 744
BSNT_03050___ 763 GATTTCGGCGGATCAATGACAGAAAAAGATTTAGAAAATTACGACATTAC 812
|||||.|||||..|.||||| ||.|.|.||||||.|
BPUM_1164___g 745 GATTTTGGCGGGACGATGAC---------------AACTGATGACATTGC 779
BSNT_03050___ 813 ---------------AATTGATGAACCGATTTGGGGAGACTATCAAGGCT 847
.|.|||..|.||.||.||||||||||||.||||.|
BPUM_1164___g 780 TCGTTATGAGGTCGAGACTGACAAGCCTATCTGGGGAGACTATAAAGGAT 829
BSNT_03050___ 848 ATCAAATCGCTACTACTCCTCCTCCAAGCTCCGGCGGTATTTTCTTAT-- 895
|.||..|.||.|.||..|||||.||||||||.|||||..|.| ||||
BPUM_1164___g 830 ACCAGCTTGCAAGTATGCCTCCACCAAGCTCAGGCGGGGTGT--TTATGC 877
BSNT_03050___ 896 TGCAAATGCTGAAAATCCTTGATGATTTTAACCTTTCACAATACGATGTC 945
||||||||||.|||||.||||||.|.||||||||.||.|||| |||.|
BPUM_1164___g 878 TGCAAATGCTCAAAATACTTGATCACTTTAACCTATCTCAAT---ATGAC 924
BSNT_03050___ 946 CGC---TCATGGGAAAAATATCAGCTGCTTGCTGAAACGATGCATTTGTC 992
|.| ||||..|||||||||||.||.||||||||||||||||||.|.||
BPUM_1164___g 925 CCCAAATCATTTGAAAAATATCAACTACTTGCTGAAACGATGCATCTCTC 974
BSNT_03050___ 993 ATATGCCGACCGTGCGTCTTACGCAGGTGATCCCGAATTTGTAAATGTTC 1042
.|||||.||||||||..|.||.||.||.||.||||||||.|||.||||||
BPUM_1164___g 975 CTATGCTGACCGTGCTGCATATGCCGGCGACCCCGAATTCGTAGATGTTC 1024
BSNT_03050___ 1043 CTCTCAAAGGCCTGCTTCACCCCGATTATATT----AAAGAACGCCAGCA 1088
|.||.|||||.||..|..||...|||||.||| ||||| ||| .|.
BPUM_1164___g 1025 CACTAAAAGGACTATTAGACGATGATTACATTTCAGAAAGA--GCC-TCT 1071
BSNT_03050___ 1089 ATTAATCAACCTAGATCAAGTGAATAAAAAACCGAAAGCCGGTGACCCTT 1138
.|||.|||| .||||||||..||||...||.|||||||..||.||.||.|
BPUM_1164___g 1072 CTTATTCAA-TTAGATCAAAAGAATCGTAACCCGAAAGAAGGGGATCCGT 1120
BSNT_03050___ 1139 GGAAATACCAAGAAGGATCAGCAAA--CTATAAACAAGTTG---AACAGC 1183
|| .|..|..|||||.|..||| |.||.|.|.| ||| ..||||
BPUM_1164___g 1121 GG----GCGTATGAGGATGAAAAAAACCCATCACCTA-TTGTCTCGCAGC 1165
BSNT_03050___ 1184 CGAAAGACAAAGTAGAA--GGCCAAACAACCCACTTTACAGTTGCTGATC 1231
|..||||.||| |..| ||..|.||.||.||.|||||.|||||.||||
BPUM_1164___g 1166 CTGAAGATAAA--ACCATTGGTGAGACCACACATTTTACTGTTGCCGATC 1213
BSNT_03050___ 1232 GATGGGGAAATGTTGTTTCTTACACAACAACAATCGAACAGCTATTCGGA 1281
..||||||||||||||.||.|.|||.|||||.||.||||||.||||.||.
BPUM_1164___g 1214 AGTGGGGAAATGTTGTGTCATTCACGACAACCATTGAACAGTTATTTGGT 1263
BSNT_03050___ 1282 ACGGGTATTATGGTCCCTGATTACGGTGTTATT-TTAAACAATGAATTAA 1330
||.||.|||.|.|||||.||.||.||| ||.|| ||||||||||||.|||
BPUM_1164___g 1264 ACAGGGATTCTCGTCCCAGAATATGGT-TTCTTCTTAAACAATGAACTAA 1312
BSNT_03050___ 1331 CGGATTTTGATGCGATACCAGGCGGAGCTAACGAAGTACAGCCAAACAAA 1380
|.|||||||||||.|.||||||||||||.||.|||||.|||||.||.|||
BPUM_1164___g 1313 CAGATTTTGATGCAAGACCAGGCGGAGCAAATGAAGTTCAGCCGAATAAA 1362
BSNT_03050___ 1381 CGGCCTTTAAGCAGCATGACCCCGACGATTTTATTTAAGGATGACAAGCC 1430
||.||.||...|||.|||||.|||||.||..|.|||||.|||.|..||||
BPUM_1164___g 1363 CGACCATTGTCCAGTATGACACCGACCATCATTTTTAAAGATAATGAGCC 1412
BSNT_03050___ 1431 TGTCCTCACTGTTGGATCTCCTGGCGGGGCCACAATTATTTCATCCGTTT 1480
||||.|.||.||.||.||.||.||.||..|.||.||||||.|.||.||||
BPUM_1164___g 1413 TGTCATGACAGTAGGTTCACCGGGTGGAACGACCATTATTGCCTCTGTTT 1462
BSNT_03050___ 1481 TGCAAACCATT----CTCTACCACATTGAATATGGTATGGAATTAAAAGC 1526
..||||||||| .|.|.| |||||||||..||||||.|..|.|.
BPUM_1164___g 1463 CACAAACCATTTTGAATTTGC----TTGAATATGAGATGGAACTTCAGGA 1508
BSNT_03050___ 1527 AGCTGTTGAAGAGCCGAGAATTTACACAAACAGTATGAGCTCTTACCGTT 1576
.||.||||||||.||.||||||||.||||||||....|..|||||.||||
BPUM_1164___g 1509 TGCAGTTGAAGAACCAAGAATTTATACAAACAGCCCAACATCTTATCGTT 1558
BSNT_03050___ 1577 ACGAAGACGGAGTTCCTAAAGATGTCCTCAGCAAGCTGAACGGTATGGGC 1626
|.||||..||.||.|||...|||||....|..|||||.||.|.|.||||.
BPUM_1164___g 1559 ATGAAGTAGGTGTCCCTCTCGATGTAAGAACAAAGCTTAATGATCTGGGA 1608
BSNT_03050___ 1627 CACAAATTCGGCACAAGT--CCGGTGGATATCGGAAACGTGCAAAG---- 1670
||....||||| |||.| ||..|.|||||.|||||.|| |.|||
BPUM_1164___g 1609 CATCGTTTCGG--CAATTCGCCTATTGATATAGGAAATGT-CCAAGCGCT 1655
BSNT_03050___ 1671 -CATATCGATCGACCATGAAAAC-GGAACCTTTAAAGGCGTAGCTGATTC 1718
|..||.|||||| |||.| ||||||||||..||.||.|||||.||
BPUM_1164___g 1656 ACTCATTGATCGA-----AAAGCAGGAACCTTTACTGGAGTGGCTGACTC 1700
BSNT_03050___ 1719 AAGCAGAAACGGCGCGGCGATCGGCATTAATTTAAAAC------GTAAAT 1762
....||||||||..|.||..|.|||.|.||||||||.| .|.|||
BPUM_1164___g 1701 TTCGAGAAACGGAACTGCCGTTGGCGTCAATTTAAAGCTCTCTGCTCAAT 1750
BSNT_03050___ 1763 AA 1764
||
BPUM_1164___g 1751 AA 1752
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