Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02113 and BPUM_1156
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:33
# Commandline: needle
# -asequence dna-align/BSNT_02113___yjqB.1.24716.seq
# -bsequence dna-align/BPUM_1156.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02113___yjqB-BPUM_1156.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02113___yjqB-BPUM_1156.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02113___yjqB
# 2: BPUM_1156
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 720
# Identity: 379/720 (52.6%)
# Similarity: 379/720 (52.6%)
# Gaps: 213/720 (29.6%)
# Score: 863.0
#
#
#=======================================
BSNT_02113___ 1 ---------ATGAAAGATATGTATGACAGCTTTGCAGCCCTTTCTGCTTC 41
||||..||||.||||.|.||.|.||.||..|||||.|||..
BPUM_1156 1 ATGAGGCAAATGATCGATACGTATCAAAGTTATGAAGAGCTTTCCGCTCA 50
BSNT_02113___ 42 TGA---------GTCGGAGTACCGGATTATTTATGAGGAGAAAAACGGAA 82
||| |...||.||.|..|||.||.||||| |||||
BPUM_1156 51 TGAAAGAAAAGGGATTGATTATCAAATTCTTCATGAG--------CGGAA 92
BSNT_02113___ 83 --GTGAGC-----------TTATCGTCCTCGGTCCCCACGGCGGCAGAAT 119
||||.| |||||| ||.||.|.|||..||||
BPUM_1156 93 AGGTGACCAGCTACTAGTTTTATCG--------CCTCATGCCGGAGGAAT 134
BSNT_02113___ 120 TGAGCCTGGCGTCAGTGAATTGGTGCGGGCATTTTCGGAT---------- 159
|||..|.|||||.||||| ||.|.||| ||
BPUM_1156 135 TGAATCAGGCGTGAGTGA----------GCTTATTC--ATGAAATATCTA 172
BSNT_02113___ 160 ----CGATGCTCCATCTATTTGTTTGAGGGTGTAAAACAGCGAAA--CAA 203
|.|| ||.||.|||||.|||||.||..|.|| ||..||| |||
BPUM_1156 173 GTGACTAT--TCTATGTATTTATTTGAAGGCCTTAA--AGTAAAAGGCAA 218
BSNT_02113___ 204 TC--GTTCCTTGCATCTCACCAGCATTCGTTTTGATGAGCCGC--TGGCT 249
|| |||| |.|||.|.||.||.|..||.||||||||||||| ||.||
BPUM_1156 219 TCATGTTC--TTCATATTACAAGTACACGCTTTGATGAGCCGCTTTGCCT 266
BSNT_02113___ 250 TT-AGAAAAAGTGAATGCCCACCATTACGCATTAGCGTTTCACGGGTATT 298
|| || |.|||.||.||||.|||.|..||||.||..||||.||.||..
BPUM_1156 267 TTCAG---AGGTGCATTCCCATCATCATACATTTGCACTTCATGGTTACG 313
BSNT_02113___ 299 ATGATCCAAACA----TCCCGCATACTTTGGTCGGCGGGGCTGATCGAAA 344
.|| ||||| |.|..||.||.||.||.||.|||.|.||..||.|
BPUM_1156 314 GTG----AAACAGAGGTGCTTCAAACGTTAGTGGGGGGGACGGACAGAGA 359
BSNT_02113___ 345 AAAAGCCAAGCTCATTTGTGAGCGTCTGAA----TGAAGCGGGTTTTAGC 390
|| |||||.|.||| ||||||| ||||.|
BPUM_1156 360 AA-----------------GAGCGGCAGAAACTGTGAAGCG---TTTAAC 389
BSNT_02113___ 391 GCCGA-------------------GCTAACTAATGAGAA--AGACCG--- 416
||..| ||||.| |||| .||.||
BPUM_1156 390 GCAAAATGGCTTTCACGCATTGCTGCTAGC-----AGAATCTGATCGTTT 434
BSNT_02113___ 417 -CCTGGCAGGTGTACACCCAAGCAATAT---TGTCAA---TCGGAC--GA 457
.||||.|.| |||||....||||| |..||| ||.||| ||
BPUM_1156 435 TTCTGGAACG----CACCCTGATAATATCAATAACAAATGTCTGACAGGA 480
BSNT_02113___ 458 AAAGAGAAATGGGGCTGCAATTGGAGGTGAG-CACGGCACAAAGAAACGC 506
|| ||.|| |.|||.|.||..|.|| || .||.|||||||..||
BPUM_1156 481 AA----AAGTG----TACAACTTGAAATTAGTCA-AGCGCAAAGAAGAGC 521
BSNT_02113___ 507 GCTGTTC-TGCAA---TTTTGGGTGCCGT-GATAAAAGCTACATACA-AA 550
.||| |.||| |||.|| ||| ||||...||.|.||||| ||
BPUM_1156 522 ---ATTCTTTCAAGACTTTAGG----CGTCGATACCGGCGAGATACACAA 564
BSNT_02113___ 551 ACGACTTG-----TTTGATCGAT------ATGTGGAAGCCGTCAAGC--- 586
|| || |||.|||.|| |||| ..||||.|
BPUM_1156 565 AC----TGAACAATTTTATCAATACACAAATGT------ACTCAAACAAG 604
BSNT_02113___ 587 ---TTGGCTTTTATACATAA 603
|.|.|.|||||..||||
BPUM_1156 605 TATTAGCCCTTTATGAATAA 624
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