Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05380 and BPUM_1150

See Amino acid alignment / Visit BSNT_05380 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:00
# Commandline: needle
#    -asequence dna-align/BSNT_05380___hag.1.24716.seq
#    -bsequence dna-align/BPUM_1150___hag3.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05380___hag-BPUM_1150___hag3.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05380___hag-BPUM_1150___hag3.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05380___hag
# 2: BPUM_1150___hag3
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 947
# Identity:     746/947 (78.8%)
# Similarity:   746/947 (78.8%)
# Gaps:          58/947 ( 6.1%)
# Score: 2948.5
# 
#
#=======================================

BSNT_05380___      1 ATGAGAATTAACCACAATATCGCAGCGCTTAACACACTGAACCGTTTGTC     50
                     |||||||||||.||||||||||||||.|||||||||.|.|||||||||||
BPUM_1150___h      1 ATGAGAATTAATCACAATATCGCAGCACTTAACACATTAAACCGTTTGTC     50

BSNT_05380___     51 TTCAAACAACGGTGCGAGCCAAAAGAACATGGAGAAACTGTCTTCAGGTC    100
                     |.|||||||||||||||||||||||||||||||||||||.|||||.||||
BPUM_1150___h     51 TGCAAACAACGGTGCGAGCCAAAAGAACATGGAGAAACTTTCTTCTGGTC    100

BSNT_05380___    101 TTCGTATCAACCGTGCGGGAGATGACGCAGCGGGTCTTGCGATTTCTGAA    150
                     ||...|||||||||||.|||||||||||.||.|||||.||.||.||||||
BPUM_1150___h    101 TTAAAATCAACCGTGCAGGAGATGACGCTGCAGGTCTAGCAATCTCTGAA    150

BSNT_05380___    151 AAAATGAGAGGACAAATCAGAGGTCTTGAAATGGCTTCTAAAAACTCTCA    200
                     ||||||.|.|||||||||.|.||..|.|||||||||.||||||||.|.||
BPUM_1150___h    151 AAAATGCGTGGACAAATCCGCGGGTTAGAAATGGCTACTAAAAACGCACA    200

BSNT_05380___    201 AGACGGAATTTCTCTTATCCAAACAGCTGAGGGTGCATTGACTGAAACTC    250
                     .|||||.||.||||||||||||||||||||.|||||||||||||||||||
BPUM_1150___h    201 GGACGGTATCTCTCTTATCCAAACAGCTGAAGGTGCATTGACTGAAACTC    250

BSNT_05380___    251 ACTCTATTCTTCAACGTGTTCGTGAACTAGTTGTTCAAGCAGGAAACACA    300
                     ||||.||.|||||||||||.|||||.||.||.||.|||||.||||||||.
BPUM_1150___h    251 ACTCAATCCTTCAACGTGTACGTGAGCTTGTCGTACAAGCTGGAAACACG    300

BSNT_05380___    301 GGTACTCAAGATGGTACTGACCTTCAAGCGATCCAAGACGAGATCACTTC    350
                     |||||.|||||||||||.||||||...|||||.|||||.||.|||.||..
BPUM_1150___h    301 GGTACACAAGATGGTACAGACCTTGGTGCGATTCAAGAAGAAATCGCTAA    350

BSNT_05380___    351 ACTTGTTGAAGAAATCGGTGGCGG----AACAAACGCTAACGGTATCTCT    396
                     .||.|||.|||||||.||||.|||    ..||||    ||||||||||||
BPUM_1150___h    351 CCTAGTTCAAGAAATTGGTGACGGTTCTGGCAAA----AACGGTATCTCT    396

BSNT_05380___    397 GACCGTACTGAGTTTAACGGTAAAAAACTTCTTAATGGCGATTTC-TCGC    445
                     ||.|||||.||.||||||||.||.|||.|.|||.|.||...|||| .|||
BPUM_1150___h    397 GATCGTACAGAATTTAACGGAAAGAAATTACTTGACGGTACTTTCAGCGC    446

BSNT_05380___    446 AAGCTAGCGGT------AAATCATTAACATTCCAAATCGGAGC---TAAC    486
                      ||||.|.|.|      |||||||||||.||||||||.||.||   ||| 
BPUM_1150___h    447 -AGCTGGTGCTACACCAAAATCATTAACTTTCCAAATTGGTGCAAATAA-    494

BSNT_05380___    487 AGCAGTCAACAGCTTTCTGTCAACATTGAAAGC-ATGGCAGCTACAGCAA    535
                     ||||  |||.|..|...|||.|||||.| |||| |||.|..||||||||.
BPUM_1150___h    495 AGCA--CAAAAATTAGATGTGAACATCG-AAGCAATGTCTTCTACAGCAC    541

BSNT_05380___    536 TTGGTGCTTTAGATACAGACGGTACGACACTTCTTA---CTGGACAAGCA    582
                     |||||||.|||||..|.|||||.|||      ||||   |.|..||.|||
BPUM_1150___h    542 TTGGTGCATTAGAAGCTGACGGAACG------CTTAAAGCAGATCACGCA    585

BSNT_05380___    583 GTATCTGACATCGACGTAACAAAATTTAAAGATAATGCGGCTGA---CAC    629
                     |||.||||||||||.||||||.||||            .|||||   .||
BPUM_1150___h    586 GTAGCTGACATCGATGTAACACAATT------------CGCTGATCCGAC    623

BSNT_05380___    630 TGCTACTGTAGGA------TTCAATGCTCAACTTA-AAACAGTTGATGAC    672
                     ||||.|||..|.|      ||..|||.|||| ||| |.|..|||||||..
BPUM_1150___h    624 TGCTGCTGGCGCACTTTCTTTTGATGATCAA-TTAGATATCGTTGATGGA    672

BSNT_05380___    673 GCAATCAACAC-AGTTTCTAAACAACGTTCAAAATTAGGTGCGGTACAAA    721
                     ||.||||| || |||.|||.|.||||||||.|||.|.|||||.||.||||
BPUM_1150___h    673 GCGATCAA-ACAAGTATCTGACCAACGTTCTAAACTCGGTGCAGTTCAAA    721

BSNT_05380___    722 ACCGTCTTGAGCACACAATCAACAACTTAAGCGCTTCTGGTGAAAACCTG    771
                     |||||||.||||||||||||||||||.|..|.|||||||||||||||.|.
BPUM_1150___h    722 ACCGTCTAGAGCACACAATCAACAACCTTGGTGCTTCTGGTGAAAACTTA    771

BSNT_05380___    772 ACTGCTGCTGAGTCTCGTATCCGTGACGTTGACATGGCGAAAGAAATGAG    821
                     ||.|||||||||||||||||||||||||||||.|||||.|||||||||||
BPUM_1150___h    772 ACAGCTGCTGAGTCTCGTATCCGTGACGTTGATATGGCTAAAGAAATGAG    821

BSNT_05380___    822 CGAGTTCACAAAGAACAACATTCTTTCTCAGGCTTCTCAAGCGATGCTGG    871
                     .|||||||||||||||||||||||||||||.|||||.|||||.|||||.|
BPUM_1150___h    822 TGAGTTCACAAAGAACAACATTCTTTCTCAAGCTTCACAAGCAATGCTTG    871

BSNT_05380___    872 CTCAAGCAAACCAACAACCGCAAAACGTACTTCAATTATTACGTTAA    918
                     |.|||||||||||||||||.||||||||||||||.|||.|.||||||
BPUM_1150___h    872 CACAAGCAAACCAACAACCACAAAACGTACTTCAGTTACTTCGTTAA    918


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