Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01961 and BPUM_1103
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:30
# Commandline: needle
# -asequence dna-align/BSNT_01961___cotZ.1.24716.seq
# -bsequence dna-align/BPUM_1103___cotZ.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01961___cotZ-BPUM_1103___cotZ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01961___cotZ-BPUM_1103___cotZ.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01961___cotZ
# 2: BPUM_1103___cotZ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 469
# Identity: 337/469 (71.9%)
# Similarity: 337/469 (71.9%)
# Gaps: 44/469 ( 9.4%)
# Score: 1178.0
#
#
#=======================================
BSNT_01961___ 1 ATGAGCCAGAAAACA-TCA---AGCTGCGT-GCGTGAAGCTGTAGAAAAT 45
||||||| |.||||| ||| |..||.|| || .||.|||||.||||||
BPUM_1103___c 1 ATGAGCC-GCAAACATTCATGGAATTGTGTAGC-AGAGGCTGTTGAAAAT 48
BSNT_01961___ 46 ATTGAAGATCTGCAAAACGCTGTTGAAGAAGACTGCCCGACCGGCTGCCA 95
|||.|.||..|||||||.||.|||||||||||.|||||||||.||||..|
BPUM_1103___c 49 ATTAACGACTTGCAAAATGCCGTTGAAGAAGAATGCCCGACCAGCTGTTA 98
BSNT_01961___ 96 CTCTAAGCT--TTT----ATCTGTAAGCCATTCGTTAGGCGACACAGTGC 139
|...||.|| ||| |||| |||||.|||||.|||||.||.|
BPUM_1103___c 99 CAGCAATCTCCTTTCTCCATCT------CATTCATTAGGTGACACTGTCC 142
BSNT_01961___ 140 CTTTTGCAATATTTACATCAAAATCAACGCCATTAGTCGCCTTCGGAAAT 189
|.||||...|.||||||||.|||||||..|||||.|||||.|||||||||
BPUM_1103___c 143 CGTTTGTTCTCTTTACATCTAAATCAAAACCATTCGTCGCATTCGGAAAT 192
BSNT_01961___ 190 GTCGGCGAACTCGATAACGGCCCTTGCTTTAATACAGTATTTTTCAGGGT 239
|||||.|||.|.|||...||.||||||||.|..||...|||||||||.||
BPUM_1103___c 193 GTCGGAGAAGTAGATGCAGGTCCTTGCTTCAGCACTACATTTTTCAGAGT 242
BSNT_01961___ 240 CGAAAGAGTGCA------TGGAAGCTGCGCAACACTGTCA--TTATTAAT 281
|||| || ||....||||||||||| ||| ||..|.||
BPUM_1103___c 243 CGAA------CACATCTCTGACCACTGCGCAACAC--TCAGCTTGCTTAT 284
BSNT_01961___ 282 CGCATTTGACGAACACAAACACATTTTGGACTTCACCGATAAAGATACGG 331
||||||||||.||.||...||.|||||.||.||.||.||||||||..|.|
BPUM_1103___c 285 CGCATTTGACAAAGACCGTCATATTTTAGATTTTACAGATAAAGACTCCG 334
BSNT_01961___ 332 TGTGTGAAGTGTTCCGACTCGAAAAAACGAACTACTGTATTGAAGTTGAC 381
|.|||||.|||||||||.|.||||||.||||.||.||.||||||||.||.
BPUM_1103___c 335 TATGTGATGTGTTCCGATTAGAAAAATCGAAGTATTGCATTGAAGTAGAT 384
BSNT_01961___ 382 TTAGACTGCTTCTGCGCAATCAACTGCTTAAATCCTCGATTAATCAATCG 431
.||||||||||||||||||||.|.|||||||||||.|||.|.|||||.||
BPUM_1103___c 385 CTAGACTGCTTCTGCGCAATCGAGTGCTTAAATCCACGACTCATCAACCG 434
BSNT_01961___ 432 TACACATCATCAGCATTAA 450
| |.|.|| |||
BPUM_1103___c 435 T-------AACTGC--TAA 444
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