Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01949 and BPUM_1095

See Amino acid alignment / Visit BSNT_01949 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:29
# Commandline: needle
#    -asequence dna-align/BSNT_01949___tenI.1.24716.seq
#    -bsequence dna-align/BPUM_1095___tenI.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01949___tenI-BPUM_1095___tenI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01949___tenI-BPUM_1095___tenI.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01949___tenI
# 2: BPUM_1095___tenI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 709
# Identity:     404/709 (57.0%)
# Similarity:   404/709 (57.0%)
# Gaps:         167/709 (23.6%)
# Score: 1031.0
# 
#
#=======================================

BSNT_01949___      1 ---------------GTGGAGCTTCACGCCATAACGGATGA--------C     27
                                    .||||.||.|||||..|.||..||||        |
BPUM_1095___t      1 ATGGGGTTGGTGCAAATGGAACTCCACGCAGTGACAAATGATTCGCTTCC     50

BSNT_01949___     28 AGCAAGCCGGTAGAAGAGCTAGCGA--GAAC-CATCATTTCGATTCAGAA     74
                     .||        |||||||||   ||  .||| .||.||..|.|||  |.|
BPUM_1095___t     51 TGC--------AGAAGAGCT---GATCAAACAAATAATAGCCATT--GCA     87

BSNT_01949___     75 --TGAAGTTGATTTTATTCACATTCGGGAACGCTCAAAATCGGC------    116
                       ||||||.|||||||||||.||.||||||||.||.|||.|.||      
BPUM_1095___t     88 TCTGAAGTCGATTTTATTCATATCCGGGAACGGTCTAAAACAGCAAGTGA    137

BSNT_01949___    117 ---GGCGGATATTCTGAAACTGCTCGAG-CTTATTTTTGAAGGCGGT---    159
                        .|..|||.|..|||||       || ||..||||.|||||.|.|   
BPUM_1095___t    138 GCTTGTTGATCTCGTGAAA-------AGTCTCCTTTTAGAAGGTGTTCCG    180

BSNT_01949___    160 ATAGATAAACGAAAACTGGTGATGAACGGGCGCGTGGATATTGCACTTTT    209
                     |.|||      |||.||..|.||.||||...|.||.||..||||.||..|
BPUM_1095___t    181 AAAGA------AAAGCTCATCATCAACGACAGAGTAGACGTTGCGCTACT    224

BSNT_01949___    210 CTCTACTATTCACCGCGTGCAGCTGCCAAGCGGCAGCTTTTCACCGAAGC    259
                     |.|||.|||||||||.||.||.||.|||.|....||||||||.||.||  
BPUM_1095___t    225 CACTAATATTCACCGTGTACATCTCCCAGGTCATAGCTTTTCGCCAAA--    272

BSNT_01949___    260 AGGTCAGAGC-------CAGATTTCCACACCTTCATATCGGGAG-GTCGG    301
                          |||||       .|.|||.|||||||||||| .||||.| .||.|
BPUM_1095___t    273 -----AGAGCTGCGGGAAAAATTCCCACACCTTCAT-GCGGGCGTCTCAG    316

BSNT_01949___    302 TGCATTCACTGGAGGAAGCGGTTCAAGCAG-------AAAAGGAAGACGC    344
                     |.|||||..|.||.||||.|   .||||||       |||.|||    ||
BPUM_1095___t    317 TTCATTCGATTGAAGAAGGG---AAAGCAGCTGAGAAAAATGGA----GC    359

BSNT_01949___    345 GGACTACGTGCTGTTCGGCCATGTGTTTGAAACGGATTGCAAAAAGGGTC    394
                     .||.||.||..|.||.||.||.||.|.|||.||...|||.|||...||.|
BPUM_1095___t    360 AGAGTATGTCATATTTGGGCACGTATATGACACCACTTGTAAACCAGGAC    409

BSNT_01949___    395 TTGAAGGC-AGAGGAGT--ATCTT-TG------CTG-----TCAACTATC    429
                     || .|||| |||||.||  |.||| ||      |||     ||.||||||
BPUM_1095___t    410 TT-CAGGCAAGAGGCGTACAGCTTGTGAAAGAACTGACATCTCTACTATC    458

BSNT_01949___    430 AAACAGCGGATTTCCATCCCGGTTATAGCCATCGGGGGGATGACGCCGGA    479
                     .|         |||||     |||.||||.|||||.||..||||.||.||
BPUM_1095___t    459 TA---------TTCCA-----GTTGTAGCGATCGGTGGAGTGACACCTGA    494

BSNT_01949___    480 --------CAG-GTTAAGAGACGTAAA--ACAAGCAGGGGCAGACGGCAT    518
                             ||| .||.|||.||||.||  ..||  ||||         ||
BPUM_1095___t    495 GCGCGTTCCAGAATTGAGACACGTGAATGTGAA--AGGG---------AT    533

BSNT_01949___    519 CGCTGTTATGTCAGGAATTTT--CTCTTCCGCTGAGCC------CTTGGA    560
                     .||.||.|||||.||||||||  |||.||  .|.||||      ..|||.
BPUM_1095___t    534 AGCGGTGATGTCTGGAATTTTTACTCATC--ATCAGCCGCGCAAAATGGC    581

BSNT_01949___    561 AGCAGCCAGACGATATTC-CCGCAAGCTAAAGGAGATGCGCTATGAAAAG    609
                     |..|||      ||.||| ...|||| |||||||||..|..||||||.|.
BPUM_1095___t    582 ACAAGC------ATTTTCTAAACAAG-TAAAGGAGAATCCTTATGAAGAA    624

BSNT_01949___    610 GCATTATGA    618
                     |||||||||
BPUM_1095___t    625 GCATTATGA    633


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