Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01946 and BPUM_1093
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:29
# Commandline: needle
# -asequence dna-align/BSNT_01946___yjbQ.1.24716.seq
# -bsequence dna-align/BPUM_1093___yjbQ.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01946___yjbQ-BPUM_1093___yjbQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01946___yjbQ-BPUM_1093___yjbQ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01946___yjbQ
# 2: BPUM_1093___yjbQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1930
# Identity: 1321/1930 (68.4%)
# Similarity: 1321/1930 (68.4%)
# Gaps: 173/1930 ( 9.0%)
# Score: 4119.0
#
#
#=======================================
BSNT_01946___ 1 ATGGCGCATACATCTGTCGAATCTTTAGTTGTTGTACTTATCGTTGCATT 50
||||.||||||||||||...|||..|.|||||.||..||||.|||||.||
BPUM_1093___y 1 ATGGAGCATACATCTGTTTCATCACTCGTTGTCGTCATTATTGTTGCCTT 50
BSNT_01946___ 51 TTTGACACCCATCCTT---TTGCATCGGTTTAAACTCAGCATCCCGGTTG 97
|||.|| |||| ||| |||||.||.|||||.||.|.|||.|||||.|
BPUM_1093___y 51 TTTCAC-CCCA--CTTTTATTGCACCGATTTAAGCTGACCATTCCGGTCG 97
BSNT_01946___ 98 TTGTTGCTGAAATCATTATGGGGCTGATAATTGGGAAAAGCGGCCTTAAT 147
||||||||||||||||.||||||||.||.|||||.||||||||.|||.|.
BPUM_1093___y 98 TTGTTGCTGAAATCATCATGGGGCTCATTATTGGAAAAAGCGGTCTTCAA 147
BSNT_01946___ 148 TTAGTTGTGGAGGGTGACACCTGGCTCCAGACAC--TCTCTATGCTCGGA 195
.||||.||.|||..|||..|.|||.| |||.|| |.||.||||||||.
BPUM_1093___y 148 CTAGTAGTTGAGCATGATGCATGGTT--AGATACGTTATCCATGCTCGGT 195
BSNT_01946___ 196 TTTATCTTTTTAATGTTTTTAAGCGGGCTTGAAATTGATTTTTCGTCGTT 245
|||||.|||.|.|||||||||||.||.||||||||.||||||||.||.||
BPUM_1093___y 196 TTTATTTTTCTGATGTTTTTAAGTGGACTTGAAATAGATTTTTCTTCTTT 245
BSNT_01946___ 246 TGAG--AAAG--GAAAGAAAAAGCAGTTCCTGCCGAATGG---CAAGGAA 288
|||| |||| |||||.|..||.| ||.||.||||| .||||||
BPUM_1093___y 246 TGAGTCAAAGAAGAAAGCACGAGAA----CTACCAAATGGTCTAAAGGAA 291
BSNT_01946___ 289 GCGCCGAATACGTTTGCTGCGGCATCTGTTAT-TTTCGTCG-GTATT--- 333
||.|||.|||||...||.||..||.||.| ||||.|.| |||||
BPUM_1093___y 292 ---CCAAATGCGTTTAAAGCAGCCACTATTGTGTTTCTTGGCGTATTTAG 338
BSNT_01946___ 334 --TTTATTTTATCATTGCTCTTGTCCTATGGGTTCGTCTTGGCCGGATTT 381
|||.|||||| || |||||||||.|||.|||.|.||.||.|||
BPUM_1093___y 339 TATTTCTTTTAT------TC-TGTCCTATGCGTTTGTCCTTGCAGGGTTT 381
BSNT_01946___ 382 ATCCAAAATGCATTTTTGATGACCCTGATTATTTCAACGATTTCATTAGG 431
||.||||||||.|||||.|||||.||.|||||.||.|||||.||||||||
BPUM_1093___y 382 ATTCAAAATGCCTTTTTAATGACGCTCATTATATCGACGATCTCATTAGG 431
BSNT_01946___ 432 CGTTGTCGTTCCAACATTAAAAGAAGAACGGATCATGAATTCGAATATCG 481
.|||||.|||||.||.||||||||.|||..|.|.|||.|..|.|||||||
BPUM_1093___y 432 GGTTGTGGTTCCTACTTTAAAAGAGGAAAAGCTGATGCAGACAAATATCG 481
BSNT_01946___ 482 GGCAGATTATTTTGCTTGTTGCTGTTATTGCTGATTTGGCCACGATGATT 531
|.||.|||||.||||||||.|||||.|||||.|||||||..|||||||||
BPUM_1093___y 482 GTCAAATTATCTTGCTTGTCGCTGTCATTGCGGATTTGGTGACGATGATT 531
BSNT_01946___ 532 CTTCTTGCTGTTTTTTCTTC--TTTATACGGAGA--GGACAGCGGAAACA 577
.|.||||||||.||.||.|| ||||| ||.|| |.||| ||.||.|
BPUM_1093___y 532 TTACTTGCTGTATTCTCCTCCATTTAT--GGCGATGGTACA--GGGAATA 577
BSNT_01946___ 578 TGTGGCTCCTGATGATTCTGTTTGCGGCCGGAGTGGTGCTTTACTTTTTC 627
|||||||.|||.|..|..|.|||||.||.||..|..|.|||||.||.||.
BPUM_1093___y 578 TGTGGCTTCTGCTCTTATTATTTGCTGCGGGCATCCTTCTTTATTTATTT 627
BSNT_01946___ 628 GGCCGGGTCTTCAA-ACATCGCTCTTTTGTTCAATCCATGTCAAAAGGGA 676
|||||.||.||.|| |||..| ||..||.||||.||||||||||||||||
BPUM_1093___y 628 GGCCGCGTATTTAAGACAAAG-TCAATTTTTCAGTCCATGTCAAAAGGGA 676
BSNT_01946___ 677 CGATCCAGATCGGGACGCGTGCCATTTTTACGTTAATTATTGTACTCGTT 726
|..|.||.||.|||||..|.||.||.|||||..|.|||||.||..|.|||
BPUM_1093___y 677 CCGTGCAAATTGGGACAAGGGCGATCTTTACTCTCATTATAGTCTTAGTT 726
BSNT_01946___ 727 GCCCTGTCTGAATCACTTGGGGCGGAAAATATTCTCGGCGCTTTCTTAGC 776
|||.|.|||||||||||.||.||.|||||||||||.||.||.||.|||||
BPUM_1093___y 727 GCCTTATCTGAATCACTCGGTGCTGAAAATATTCTTGGAGCGTTTTTAGC 776
BSNT_01946___ 777 GGGGGTTCTTGTTTCCCTGCTTTCGCCAAACAAAGAACTTGTTCAGCAGC 826
|||.||.||.||.||.||.||.|||||.||.|||||.|||||||||||.|
BPUM_1093___y 777 GGGCGTACTCGTGTCTCTTCTCTCGCCGAATAAAGAGCTTGTTCAGCAAC 826
BSNT_01946___ 827 TGGACTCATTCGGTTATGGGTTCTTAATACCGATTTTCTTCGTGATGGTC 876
||||.|||||.||.||.||.||.||.||.||.||.|||||.|||||||||
BPUM_1093___y 827 TGGATTCATTTGGCTACGGATTTTTGATCCCTATCTTCTTTGTGATGGTC 876
BSNT_01946___ 877 GGTGTGAAGCTTG-ATATTTGGACTCTTTTCCAGGATAAAACAATTTTAA 925
||.|||.| .||| ||||.|||.|.||.|||.|.||...|||.|||.|.|
BPUM_1093___y 877 GGAGTGGA-TTTGAATATATGGGCACTATTCAAAGACCCAACCATTATGA 925
BSNT_01946___ 926 TCATGATTCCGCTCCTGCTGCTGGCGCT-----GTTAGTCAGCAAAATCA 970
|||||||.|||||.||..|..|.|| || .|||||.||| |||
BPUM_1093___y 926 TCATGATCCCGCTGCTATTTATTGC-CTTACTCATTAGTAAGC----TCA 970
BSNT_01946___ 971 TTCCTGTCATGTACTTAAAGAAGTGGTATGATAACCGAACCA--TTTTCG 1018
|.||..|..|.||.||.||.||.||||||||.| .|||..| |..|||
BPUM_1093___y 971 TCCCGATTCTTTATTTGAAAAAATGGTATGACA--TGAAAAAAGTGATCG 1018
BSNT_01946___ 1019 CGTCTGGTTTCCTGCTGACATCAACGCTTTCGCTCGTGATTGCCGCTGCA 1068
..|||||.||..|..|.|||||.|||.|.||.|||||.|||||.|||||.
BPUM_1093___y 1019 GTTCTGGCTTTTTATTAACATCGACGTTATCACTCGTCATTGCAGCTGCG 1068
BSNT_01946___ 1069 ACAATCGGCCAGCAGCTTCACGTGA-TCAGTG--CA-AATATGTCAGGAG 1114
||.|||||..|||.||| || || |||.|| || ||.|||||.||||
BPUM_1093___y 1069 ACGATCGGGGAGCGGCT---CG-GAGTCATTGACCATAAAATGTCTGGAG 1114
BSNT_01946___ 1115 CGCTAATTTTAGTAGCCGTCATTGCAAGTATTTTTACGCCGATCTGTTTT 1164
||||.|||.||||.||.||..|..|.||||||||.||||||.|.||.|||
BPUM_1093___y 1115 CGCTGATTCTAGTCGCGGTACTCACGAGTATTTTAACGCCGGTTTGGTTT 1164
BSNT_01946___ 1165 AAA---------AAATTATACAAACGGGAAGAGCAGCCG-GAG-GAGAAA 1203
||| ||| ||| |||.| |||.| ||| .|.|||
BPUM_1093___y 1165 AAAGCGCTGTTTAAA------AAA---GAACA--AGCTGCGAGCCATAAA 1203
BSNT_01946___ 1204 AAGACG-ATTACGTTCATTGGCGCCAATCAAATGACTTTGCCTGTTACAC 1252
|| ||| .|.||.||.|||||.||.|||||..||||.||.||||||||||
BPUM_1093___y 1204 AA-ACGTGTGACCTTTATTGGTGCAAATCAGCTGACCTTACCTGTTACAC 1252
BSNT_01946___ 1253 TTGAATTGCCAGAGGAAGAGTATGACGTGCGTGTTGTACACGTCTACCAA 1302
|.||.||.|...||||.||.|||||..|.||..||.|.||.||||..|||
BPUM_1093___y 1253 TCGATTTACATCAGGATGAATATGATATTCGAATTTTGCATGTCTTTCAA 1302
BSNT_01946___ 1303 GAGAATGCGGAGGAAAAGCTG---TCAGAATCAGTGTTTGCTGTTGAAAC 1349
||.||| .|.|||..|||| .||||.||..|.||||..||||||.|
BPUM_1093___y 1303 GAAAAT---AAAGAAGCGCTGCTTGCAGACTCCATCTTTGAAGTTGAATC 1349
BSNT_01946___ 1350 AATTTCTGACTATGAAT-ACGAGACGCT-TGAA--TCACTCGGCATTTTT 1395
.|||...||.|| .||| |.|||||||| .||| .|| |||.||...
BPUM_1093___y 1350 GATTGAAGAGTA-CAATGATGAGACGCTGCGAAAGGCA---GGCGTTGGC 1395
BSNT_01946___ 1396 GAAACGGATATCCTCGTTGTGGCGACAGGAAATGA----AGATATGAATG 1441
.|...||||.|||||||.||.||.||.||.|.||| |.|.|| ||.|
BPUM_1093___y 1396 CAGGAGGATGTCCTCGTCGTCGCAACTGGCAGTGAGACGAAAAAT-AAGG 1444
BSNT_01946___ 1442 CACACATTGCATTACTTGCAAAAGAAAAAGGCACAGAAA-GAGTCATTGC 1490
|.|||||.|||.|||||||.|||.|||| |..|||| .|||||||||
BPUM_1093___y 1445 ---AAATTGCTTTATTTGCAAAGGAAGAAGG-AGCGAAACAAGTCATTGC 1490
BSNT_01946___ 1491 AAGCGTAGGATCACCGGAGCATGAAGCAGCTC------TGAAGG-AGCAG 1533
.||.|| ||.|| .||| |||.||||..| |||||| ||||
BPUM_1093___y 1491 GAGTGT--GAACA---AAGC-TGAGGCAGAGCTGGAATTGAAGGAAGCA- 1533
BSNT_01946___ 1534 GGAATCAGCATCTTTTCTATTCTGCTGTCGACAAAAACGCTGCTTCGCGC 1583
|||||....|..|||||||.|.|.||.||..|.||||||.|||||.|.||
BPUM_1093___y 1534 GGAATTGATACGTTTTCTAATTTCCTATCATCTAAAACGGTGCTTAGAGC 1583
BSNT_01946___ 1584 ACTGATAGAAGCGCCTGGCGTCATGAAGCTGC-----------TCACGAA 1622
..||||.|||||.|| ||.||| |.||.||
BPUM_1093___y 1584 CTTGATTGAAGCACC-----------AGATGCGATTCGATTATTAACAAA 1622
BSNT_01946___ 1623 CCAAGAGTCTTCGCTGTATCAAATTAATATGGAGAACAGTAA---ATATG 1669
..|.||..||||..|||||||||||.|.|| |||||.|.| .|||.
BPUM_1093___y 1623 TGAGGATACTTCCTTGTATCAAATTCAAAT---GAACAATCATCGCTATC 1669
BSNT_01946___ 1670 ATGGTGTCATTTTACGGGAATTCCCTTTAACAGGTGACGTCATCTTTGTC 1719
|...||||||..|..|||||||.||.||.||.||.||..|..||||||||
BPUM_1093___y 1670 ACAATGTCATGCTGAGGGAATTTCCGTTTACTGGCGATTTGGTCTTTGTC 1719
BSNT_01946___ 1720 AGGATTTTCAGAGGTGTGGACAGCATCGTTCCTCATGGGGATACTAGGCT 1769
.|.|||||||||||..|.|||||..|.||.||.||.||.|||||.|.|||
BPUM_1093___y 1720 CGTATTTTCAGAGGGATTGACAGTTTAGTCCCACACGGAGATACGACGCT 1769
BSNT_01946___ 1770 --GAAACTGGGAGATCGCTTAATTGTCACCGGATCTCGGGGGTACGTAAC 1817
|||.| |||||.||..|..||||..|.||.|||||.|..||.||..|
BPUM_1093___y 1770 TAGAAGC--GGAGACCGTGTGCTTGTATCGGGCTCTCGTGAATATGTGGC 1817
BSNT_01946___ 1818 -GGATCTTAAGAAAAC-ATTGGAAGGATAA 1845
||| .|||||...| ||| ||..|||
BPUM_1093___y 1818 AGGA--CTAAGAGCTCAATT---AGAGTAA 1842
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