Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01930 and BPUM_1082
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:28
# Commandline: needle
# -asequence dna-align/BSNT_01930___yjbG.1.24716.seq
# -bsequence dna-align/BPUM_1082___yjbG.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01930___yjbG-BPUM_1082___yjbG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01930___yjbG-BPUM_1082___yjbG.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01930___yjbG
# 2: BPUM_1082___yjbG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2149
# Identity: 1484/2149 (69.1%)
# Similarity: 1484/2149 (69.1%)
# Gaps: 224/2149 (10.4%)
# Score: 5157.5
#
#
#=======================================
BSNT_01930___ 0 -------------------------------------------------- 0
BPUM_1082___y 1 ATGCTTTCTTATTTCATTAGCATGTTTCATGCCCACTTTGATCATGATAA 50
BSNT_01930___ 1 -------------------GTGAA-AGGCACAAAAGGAAAGGTTTT---T 27
.|||| || ||||.||.|.|||| |
BPUM_1082___y 51 GAAAAAGGTGGTGCTGCGATTGAATAG-----AAAGAAACGCTTTTTTCT 95
BSNT_01930___ 28 CGTGTTTTTA--CTGCTTTTTTGGCATTCGTTCTCTTCATTACTGCATAT 75
|.|.|||||| ||| ||||| |.||.|||.||||||||
BPUM_1082___y 96 CATTTTTTTAGTCTG----TTTGG---------TATTTATTTCTGCATAT 132
BSNT_01930___ 76 GATTTGACAAA-AGGCAGTGAAAAAC-CGGAAGATATTCACAACACAAGT 123
||||||||||| | .|||..||||| ..|||||||...|||||||.|.|
BPUM_1082___y 133 GATTTGACAAATA--TAGTTCAAAACAAAGAAGATAAATACAACACCAAT 180
BSNT_01930___ 124 TTATTGAGAAACAGCTGTTTTTTCAATT-------GGCTTGAATCAA-AG 165
||.|||||.|| || |||..|||| |.
BPUM_1082___y 181 -----------------TTCTTTCACTTTCCGAAAGG-TTGGTTCAACAC 212
BSNT_01930___ 166 AA-----GACGAGGGGGA-TCACCATGGC-TGAGGAAAAAAAAGCA---- 204
|| | |.||||||| ||| .|||.| |.|| ||||||
BPUM_1082___y 213 AACTTATG-CAAGGGGGATTCA-TATGACTTCAG------AAAGCAATAA 254
BSNT_01930___ 205 -AACCAACTGCCTGACAGAAGTGAGGTAAAGGCAGAAGACACATGGAGAC 253
|||||..|.||.||||||||.||.|||||.|.||||.|||.||||.|||
BPUM_1082___y 255 CAACCATTTACCGGACAGAAGCGAAGTAAAAGAAGAAAACAAATGGCGAC 304
BSNT_01930___ 254 TTGAGGATATTTTTCCTAGTGATGAGGCCTGGAATAAAGAATTTCAAGCT 303
||||.|||||||||...||.|..||.||.||||||||.||||||.||||.
BPUM_1082___y 305 TTGAAGATATTTTTGAAAGCGTCGATGCATGGAATAAGGAATTTGAAGCG 354
BSNT_01930___ 304 GTAAAAGAATTAATTCCGAATTTATCTAAGTATAAAGGAAAGCTGGCAGA 353
||.|||.||..||||||.||..|..|..|.|.||||||.|||||.||..|
BPUM_1082___y 355 GTCAAAAAAGAAATTCCTAAGCTCGCCCAATTTAAAGGCAAGCTCGCTCA 404
BSNT_01930___ 354 TTCAGCTGATCATTTATACGAGGCTCTTACGTATCAAGAT---------- 393
|||.||||||....|.||.||.||.||.||.|.|||.|||
BPUM_1082___y 405 TTCTGCTGATGTACTGTATGAAGCCCTAACCTTTCAGGATCAGCTTTCTG 454
BSNT_01930___ 394 -AAAGTGATGGAGCGGCTGGGTAGGCTGTACACATATGCGCATATGCGCT 442
||| |||.||||.|||.||.|||||||||||||||...|
BPUM_1082___y 455 AAAA-----------GCTTGGTAAGCTTTATACATATGCGCATATGAAAT 493
BSNT_01930___ 443 CTGACCAGGATACTGGGAACTC--CTTTTACCAGGGGCTGAATGACAAGG 490
..||..|||||||...|||||| |.||| ||.|.|||||||||.||.|
BPUM_1082___y 494 ACGATGAGGATACAACGAACTCATCATTT--CAAGCGCTGAATGATAAAG 541
BSNT_01930___ 491 CGGGAAACCTGTATACACAGGCT-GCAAGCGCGACAGCTTATTTGGTTCC 539
|....||..|.|.|||||| ||| .|.||..|..|.||||||.|.|||||
BPUM_1082___y 542 CATCGAATTTATTTACACA-GCTCTCTAGTACCTCTGCTTATATTGTTCC 590
BSNT_01930___ 540 GGAGATTTTATCCATAGAAGAAGACAAACTGCAGCAGTTCATTCTT-GAA 588
.|||||||||||.||..|||||||.|||.||||||||||.| |||| |||
BPUM_1082___y 591 AGAGATTTTATCGATTCAAGAAGATAAATTGCAGCAGTTTA-TCTTGGAA 639
BSNT_01930___ 589 AAAGAAGAATTAAAGCTGTACTCTCATGCGATTGAGGAGATTACAAAGGA 638
||||||||||||||.|||||.||||||||..||||.||.||||..||.||
BPUM_1082___y 640 AAAGAAGAATTAAAACTGTATTCTCATGCTCTTGAAGAAATTAATAAAGA 689
BSNT_01930___ 639 ACGTCCGCATGTGCTGAGCGAGAAGGAAGAGGCACTGCTT-GCTGAAGCC 687
||||||||||.|.||.||.|||.|..||||||| ||..|| |||||.||.
BPUM_1082___y 690 ACGTCCGCATATCCTAAGTGAGGAACAAGAGGC-CTTATTAGCTGAGGCA 738
BSNT_01930___ 688 TCCGAGGTACTGGGGTCATCTTCA---AATACATTCAGCGTGTTAAATAA 734
||.|| ||.....|||.||||| |.|||.||.||..||||.||.||
BPUM_1082___y 739 TCTGA---ACCTCTCTCAACTTCATCTACTACTTTTAGTATGTTTAACAA 785
BSNT_01930___ 735 CGCAGATATAACGTTTCCATCCATTAAAGACGAAGATGGGAATGAAAAAC 784
.||.||||||.||||.||.||..|.||.||.|||.|||||.|.|||||..
BPUM_1082___y 786 TGCTGATATATCGTTCCCTTCTGTAAAGGATGAAAATGGGGAAGAAAAGA 835
BSNT_01930___ 785 AGATCACTCACGGCAACTTTATTA-ATTTCTTGGAAAGTGAAAACCGTGA 833
|.||.||.|||||||||||||||| |||| ||..|.|||||..|||||||
BPUM_1082___y 836 AAATTACCCACGGCAACTTTATTACATTT-TTAAATAGTGATGACCGTGA 884
BSNT_01930___ 834 AGTCCGCAAAAATGCGTTTGACGCAGTGTATAAAACGTACGGACAATATA 883
|||..|.||.|||||.|||.|.||.||||||||||||||||..||.||||
BPUM_1082___y 885 AGTGAGAAAGAATGCCTTTAAAGCTGTGTATAAAACGTACGATCAGTATA 934
BSNT_01930___ 884 AAAATACAATGGCCACGACGCTTAGCGGCACTGTGAAAAAGGACAACTTC 933
||||.|||.|.||..||||.||.||.|||.|..|.||||||||.||.||.
BPUM_1082___y 935 AAAACACACTTGCTTCGACACTGAGTGGCTCGATTAAAAAGGATAATTTT 984
BSNT_01930___ 934 TACGCGAGAGTGAAAAAGTACAAGTCCGCGCGTGAGGCTGCGCTTTCTAA 983
||.||.|.|||...|||.||.||.||.||..|.||..|.||.||.|||..
BPUM_1082___y 985 TATGCAAAAGTTCGAAATTATAAATCGGCAAGAGAATCAGCACTATCTCG 1034
BSNT_01930___ 984 CAACAGTATTCCTGAGGAAGTATACGATAACCTTGTTAAGACGATTAATA 1033
.|||||||||||.||.||||||||.||.||.||..||.|.|||.||.||.
BPUM_1082___y 1035 AAACAGTATTCCAGAAGAAGTATATGACAATCTCATTGATACGGTTCATC 1084
BSNT_01930___ 1034 AGCATTTGCCGCTCCTGCACCGCTATATTGCGCTAAGAAAGAAAGTGCTT 1083
|..||||.|||.|.||.|||||.|||||||...||.|.||.||.|||.|.
BPUM_1082___y 1085 AATATTTACCGTTACTACACCGTTATATTGAATTACGTAAAAAGGTGTTA 1134
BSNT_01930___ 1084 GAGCTTGATGAAGTGCATATCTATGACCTGTATACACCGCTTGTGAAAGA 1133
.||||||||||||||||.|..||||||.|||||||.||.|||||.|||||
BPUM_1082___y 1135 AAGCTTGATGAAGTGCACAATTATGACTTGTATACGCCACTTGTAAAAGA 1184
BSNT_01930___ 1134 TGCTGGGATGAAGGTGACATACGAGGAAGCCAAAGATTACATGCTGAAAG 1183
||||||.||||||.|.||.|||||.|||||.||.|||||.|||||.||||
BPUM_1082___y 1185 TGCTGGAATGAAGCTAACTTACGATGAAGCAAAGGATTATATGCTAAAAG 1234
BSNT_01930___ 1184 GCCTTGCACCTTTAGGGGAAGAATATGCCTCTATCCTAAAAGAAGGACTG 1233
|..|.||.||.|||||.||||||||||.||||.|..|||||||.||.||.
BPUM_1082___y 1235 GGTTAGCGCCATTAGGAGAAGAATATGTCTCTGTGTTAAAAGAGGGGCTC 1284
BSNT_01930___ 1234 GAAAACCGCTGGGTGGACGTTTACGAAAATAAAGGCAAACGCAATGGGGC 1283
.|.||.||||||||.||||||||.||.||||||||.|||||.|..||.||
BPUM_1082___y 1285 AATAATCGCTGGGTAGACGTTTATGAGAATAAAGGGAAACGTAGCGGTGC 1334
BSNT_01930___ 1284 TTATTCATCAGG-AGCTTACGGCACGAATCCGTATATTTTGATGAACTGG 1332
.||||||||.|| ||| ||.|||||.|||||.|||||..|.|||||||||
BPUM_1082___y 1335 GTATTCATCTGGAAGC-TATGGCACAAATCCATATATCCTCATGAACTGG 1383
BSNT_01930___ 1333 CATAATAACGTCAATAATCTCTTTACGCTCGTGCACGAGTTTGGACATTC 1382
||.|||||..|..|||||.|.|||||.||.|..||.||.|||||.||.||
BPUM_1082___y 1384 CAAAATAATATTGATAATTTATTTACACTGGCTCATGAATTTGGGCACTC 1433
BSNT_01930___ 1383 CGTACACAGCTACTATACGAGAAAGCACCAGCCTTATCCATATGGCAATT 1432
.||.||||||||||||||.|||||||||||.||.|||||.|||||.||.|
BPUM_1082___y 1434 TGTCCACAGCTACTATACAAGAAAGCACCAACCATATCCGTATGGAAACT 1483
BSNT_01930___ 1433 ACAGCATCTTTGTCGCGGAAGTTGCCTCTACGACAAATGAAGCGCTCCTT 1482
|||||||||||||.||.|||||.||.||.||||||||.||.|||.|.||.
BPUM_1082___y 1484 ACAGCATCTTTGTAGCTGAAGTAGCTTCCACGACAAACGAGGCGTTACTA 1533
BSNT_01930___ 1483 GGCGAATATCTGCTGAACAATTTAGAGGATGAAAAACAGCGCTTATATAT 1532
||.||||||.||.||||..||.||||.|||.||||.|||||.||.|||.|
BPUM_1082___y 1534 GGTGAATATTTGTTGAATCATCTAGATGATAAAAAGCAGCGTTTGTATGT 1583
BSNT_01930___ 1533 TCTCAACCATATGCTTGAGGGCTTCAGGGGAACGGTTTTCAGACAAACGA 1582
.||.||.|||.||.|.||.||.||.||.|||||.||.||||||||.||||
BPUM_1082___y 1584 GCTAAATCATTTGTTAGAAGGATTTAGAGGAACAGTGTTCAGACAGACGA 1633
BSNT_01930___ 1583 TGTTCGCTGAATTTGAACATCTGATCCATACAAAGGCGCAAGAAGGCGAG 1632
||||.|||||.|||||.||||||||.|||...||.||.||||||||.|||
BPUM_1082___y 1634 TGTTTGCTGAGTTTGAGCATCTGATTCATGTGAAAGCACAAGAAGGAGAG 1683
BSNT_01930___ 1633 CCGCTT--ACACCTGAGCTTC-TGACAAAGGTCTATTACGACCTGAATAA 1679
|||| ||.||.|| .||| ||||.||..|.|||||||||||||||||
BPUM_1082___y 1684 --GCTTTAACGCCAGA-ATTCATGACGAACCTTTATTACGACCTGAATAA 1730
BSNT_01930___ 1680 AAAGTATTTTGGAGACGGCATGGTGATTGATAAGGAAATCGGCCTTGAAT 1729
.|||||||||||||||||||||||..|.|||||.||||||||..|.||||
BPUM_1082___y 1731 GAAGTATTTTGGAGACGGCATGGTTGTGGATAAAGAAATCGGATTAGAAT 1780
BSNT_01930___ 1730 GGTCGCGTATTCCGCACTTCTATTACAATTACTATGTGTATCAGTATGCG 1779
||.||.|.||.||.||||||||.|||||.||.|||||.|||||.|||||.
BPUM_1082___y 1781 GGACGAGAATCCCTCACTTCTACTACAACTATTATGTCTATCAATATGCA 1830
BSNT_01930___ 1780 ACAGGGTACAGCGCTGCCCAAGCATTAAGCAGCCAGAT-TTTGAAGGAAG 1828
|||||.||.||.|||||.||.||||||||||..||.|| ||.||| ||||
BPUM_1082___y 1831 ACAGGCTATAGTGCTGCACAGGCATTAAGCAAGCAAATCTTAGAA-GAAG 1879
BSNT_01930___ 1829 GAAAGCCGGCGGTTGACCGTTATATTGACTTCCTGAAAGCGGGAAGCTCA 1878
||||.||.|||||.||.||.||.|..||||||||.|||||.||||||||.
BPUM_1082___y 1880 GAAAACCTGCGGTGGAGCGCTACACAGACTTCCTTAAAGCAGGAAGCTCT 1929
BSNT_01930___ 1879 CAATACCCGATTGATGTCCTGAAAAAAGCGGGTGTTGATATGACGTCTCC 1928
.|.|||||.|||.||||.|||||||||||.||||||||||||.|.||...
BPUM_1082___y 1930 GATTACCCAATTAATGTGCTGAAAAAAGCAGGTGTTGATATGGCTTCCAA 1979
BSNT_01930___ 1929 AGAGCCAATCGAAGCCGCGTGCAAAATGTTTGAAGAAAAACTTGATGAAA 1978
|||.|||||||||||.||.||..||.||||.|||||||||.|..|.||||
BPUM_1082___y 1980 AGAACCAATCGAAGCAGCATGTCAATTGTTCGAAGAAAAATTAAAAGAAA 2029
BSNT_01930___ 1979 TGGAAGAGCTGCTGATGAAAGTCAAGCAGTCT-TAA------------- 2013
|||||||||| || ||| |||
BPUM_1082___y 2030 TGGAAGAGCT----------------CA-TCTCTAAAACGGGTGAGTAA 2061
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