Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01930 and BPUM_1082

See Amino acid alignment / Visit BSNT_01930 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:28
# Commandline: needle
#    -asequence dna-align/BSNT_01930___yjbG.1.24716.seq
#    -bsequence dna-align/BPUM_1082___yjbG.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01930___yjbG-BPUM_1082___yjbG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01930___yjbG-BPUM_1082___yjbG.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01930___yjbG
# 2: BPUM_1082___yjbG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2149
# Identity:    1484/2149 (69.1%)
# Similarity:  1484/2149 (69.1%)
# Gaps:         224/2149 (10.4%)
# Score: 5157.5
# 
#
#=======================================

BSNT_01930___      0 --------------------------------------------------      0
                                                                       
BPUM_1082___y      1 ATGCTTTCTTATTTCATTAGCATGTTTCATGCCCACTTTGATCATGATAA     50

BSNT_01930___      1 -------------------GTGAA-AGGCACAAAAGGAAAGGTTTT---T     27
                                        .|||| ||     ||||.||.|.||||   |
BPUM_1082___y     51 GAAAAAGGTGGTGCTGCGATTGAATAG-----AAAGAAACGCTTTTTTCT     95

BSNT_01930___     28 CGTGTTTTTA--CTGCTTTTTTGGCATTCGTTCTCTTCATTACTGCATAT     75
                     |.|.||||||  |||    |||||         |.||.|||.||||||||
BPUM_1082___y     96 CATTTTTTTAGTCTG----TTTGG---------TATTTATTTCTGCATAT    132

BSNT_01930___     76 GATTTGACAAA-AGGCAGTGAAAAAC-CGGAAGATATTCACAACACAAGT    123
                     ||||||||||| |  .|||..||||| ..|||||||...|||||||.|.|
BPUM_1082___y    133 GATTTGACAAATA--TAGTTCAAAACAAAGAAGATAAATACAACACCAAT    180

BSNT_01930___    124 TTATTGAGAAACAGCTGTTTTTTCAATT-------GGCTTGAATCAA-AG    165
                                      ||.|||||.||       || |||..|||| |.
BPUM_1082___y    181 -----------------TTCTTTCACTTTCCGAAAGG-TTGGTTCAACAC    212

BSNT_01930___    166 AA-----GACGAGGGGGA-TCACCATGGC-TGAGGAAAAAAAAGCA----    204
                     ||     | |.||||||| ||| .|||.| |.||      ||||||    
BPUM_1082___y    213 AACTTATG-CAAGGGGGATTCA-TATGACTTCAG------AAAGCAATAA    254

BSNT_01930___    205 -AACCAACTGCCTGACAGAAGTGAGGTAAAGGCAGAAGACACATGGAGAC    253
                      |||||..|.||.||||||||.||.|||||.|.||||.|||.||||.|||
BPUM_1082___y    255 CAACCATTTACCGGACAGAAGCGAAGTAAAAGAAGAAAACAAATGGCGAC    304

BSNT_01930___    254 TTGAGGATATTTTTCCTAGTGATGAGGCCTGGAATAAAGAATTTCAAGCT    303
                     ||||.|||||||||...||.|..||.||.||||||||.||||||.||||.
BPUM_1082___y    305 TTGAAGATATTTTTGAAAGCGTCGATGCATGGAATAAGGAATTTGAAGCG    354

BSNT_01930___    304 GTAAAAGAATTAATTCCGAATTTATCTAAGTATAAAGGAAAGCTGGCAGA    353
                     ||.|||.||..||||||.||..|..|..|.|.||||||.|||||.||..|
BPUM_1082___y    355 GTCAAAAAAGAAATTCCTAAGCTCGCCCAATTTAAAGGCAAGCTCGCTCA    404

BSNT_01930___    354 TTCAGCTGATCATTTATACGAGGCTCTTACGTATCAAGAT----------    393
                     |||.||||||....|.||.||.||.||.||.|.|||.|||          
BPUM_1082___y    405 TTCTGCTGATGTACTGTATGAAGCCCTAACCTTTCAGGATCAGCTTTCTG    454

BSNT_01930___    394 -AAAGTGATGGAGCGGCTGGGTAGGCTGTACACATATGCGCATATGCGCT    442
                      |||           |||.||||.|||.||.|||||||||||||||...|
BPUM_1082___y    455 AAAA-----------GCTTGGTAAGCTTTATACATATGCGCATATGAAAT    493

BSNT_01930___    443 CTGACCAGGATACTGGGAACTC--CTTTTACCAGGGGCTGAATGACAAGG    490
                     ..||..|||||||...||||||  |.|||  ||.|.|||||||||.||.|
BPUM_1082___y    494 ACGATGAGGATACAACGAACTCATCATTT--CAAGCGCTGAATGATAAAG    541

BSNT_01930___    491 CGGGAAACCTGTATACACAGGCT-GCAAGCGCGACAGCTTATTTGGTTCC    539
                     |....||..|.|.|||||| ||| .|.||..|..|.||||||.|.|||||
BPUM_1082___y    542 CATCGAATTTATTTACACA-GCTCTCTAGTACCTCTGCTTATATTGTTCC    590

BSNT_01930___    540 GGAGATTTTATCCATAGAAGAAGACAAACTGCAGCAGTTCATTCTT-GAA    588
                     .|||||||||||.||..|||||||.|||.||||||||||.| |||| |||
BPUM_1082___y    591 AGAGATTTTATCGATTCAAGAAGATAAATTGCAGCAGTTTA-TCTTGGAA    639

BSNT_01930___    589 AAAGAAGAATTAAAGCTGTACTCTCATGCGATTGAGGAGATTACAAAGGA    638
                     ||||||||||||||.|||||.||||||||..||||.||.||||..||.||
BPUM_1082___y    640 AAAGAAGAATTAAAACTGTATTCTCATGCTCTTGAAGAAATTAATAAAGA    689

BSNT_01930___    639 ACGTCCGCATGTGCTGAGCGAGAAGGAAGAGGCACTGCTT-GCTGAAGCC    687
                     ||||||||||.|.||.||.|||.|..||||||| ||..|| |||||.||.
BPUM_1082___y    690 ACGTCCGCATATCCTAAGTGAGGAACAAGAGGC-CTTATTAGCTGAGGCA    738

BSNT_01930___    688 TCCGAGGTACTGGGGTCATCTTCA---AATACATTCAGCGTGTTAAATAA    734
                     ||.||   ||.....|||.|||||   |.|||.||.||..||||.||.||
BPUM_1082___y    739 TCTGA---ACCTCTCTCAACTTCATCTACTACTTTTAGTATGTTTAACAA    785

BSNT_01930___    735 CGCAGATATAACGTTTCCATCCATTAAAGACGAAGATGGGAATGAAAAAC    784
                     .||.||||||.||||.||.||..|.||.||.|||.|||||.|.|||||..
BPUM_1082___y    786 TGCTGATATATCGTTCCCTTCTGTAAAGGATGAAAATGGGGAAGAAAAGA    835

BSNT_01930___    785 AGATCACTCACGGCAACTTTATTA-ATTTCTTGGAAAGTGAAAACCGTGA    833
                     |.||.||.|||||||||||||||| |||| ||..|.|||||..|||||||
BPUM_1082___y    836 AAATTACCCACGGCAACTTTATTACATTT-TTAAATAGTGATGACCGTGA    884

BSNT_01930___    834 AGTCCGCAAAAATGCGTTTGACGCAGTGTATAAAACGTACGGACAATATA    883
                     |||..|.||.|||||.|||.|.||.||||||||||||||||..||.||||
BPUM_1082___y    885 AGTGAGAAAGAATGCCTTTAAAGCTGTGTATAAAACGTACGATCAGTATA    934

BSNT_01930___    884 AAAATACAATGGCCACGACGCTTAGCGGCACTGTGAAAAAGGACAACTTC    933
                     ||||.|||.|.||..||||.||.||.|||.|..|.||||||||.||.||.
BPUM_1082___y    935 AAAACACACTTGCTTCGACACTGAGTGGCTCGATTAAAAAGGATAATTTT    984

BSNT_01930___    934 TACGCGAGAGTGAAAAAGTACAAGTCCGCGCGTGAGGCTGCGCTTTCTAA    983
                     ||.||.|.|||...|||.||.||.||.||..|.||..|.||.||.|||..
BPUM_1082___y    985 TATGCAAAAGTTCGAAATTATAAATCGGCAAGAGAATCAGCACTATCTCG   1034

BSNT_01930___    984 CAACAGTATTCCTGAGGAAGTATACGATAACCTTGTTAAGACGATTAATA   1033
                     .|||||||||||.||.||||||||.||.||.||..||.|.|||.||.||.
BPUM_1082___y   1035 AAACAGTATTCCAGAAGAAGTATATGACAATCTCATTGATACGGTTCATC   1084

BSNT_01930___   1034 AGCATTTGCCGCTCCTGCACCGCTATATTGCGCTAAGAAAGAAAGTGCTT   1083
                     |..||||.|||.|.||.|||||.|||||||...||.|.||.||.|||.|.
BPUM_1082___y   1085 AATATTTACCGTTACTACACCGTTATATTGAATTACGTAAAAAGGTGTTA   1134

BSNT_01930___   1084 GAGCTTGATGAAGTGCATATCTATGACCTGTATACACCGCTTGTGAAAGA   1133
                     .||||||||||||||||.|..||||||.|||||||.||.|||||.|||||
BPUM_1082___y   1135 AAGCTTGATGAAGTGCACAATTATGACTTGTATACGCCACTTGTAAAAGA   1184

BSNT_01930___   1134 TGCTGGGATGAAGGTGACATACGAGGAAGCCAAAGATTACATGCTGAAAG   1183
                     ||||||.||||||.|.||.|||||.|||||.||.|||||.|||||.||||
BPUM_1082___y   1185 TGCTGGAATGAAGCTAACTTACGATGAAGCAAAGGATTATATGCTAAAAG   1234

BSNT_01930___   1184 GCCTTGCACCTTTAGGGGAAGAATATGCCTCTATCCTAAAAGAAGGACTG   1233
                     |..|.||.||.|||||.||||||||||.||||.|..|||||||.||.||.
BPUM_1082___y   1235 GGTTAGCGCCATTAGGAGAAGAATATGTCTCTGTGTTAAAAGAGGGGCTC   1284

BSNT_01930___   1234 GAAAACCGCTGGGTGGACGTTTACGAAAATAAAGGCAAACGCAATGGGGC   1283
                     .|.||.||||||||.||||||||.||.||||||||.|||||.|..||.||
BPUM_1082___y   1285 AATAATCGCTGGGTAGACGTTTATGAGAATAAAGGGAAACGTAGCGGTGC   1334

BSNT_01930___   1284 TTATTCATCAGG-AGCTTACGGCACGAATCCGTATATTTTGATGAACTGG   1332
                     .||||||||.|| ||| ||.|||||.|||||.|||||..|.|||||||||
BPUM_1082___y   1335 GTATTCATCTGGAAGC-TATGGCACAAATCCATATATCCTCATGAACTGG   1383

BSNT_01930___   1333 CATAATAACGTCAATAATCTCTTTACGCTCGTGCACGAGTTTGGACATTC   1382
                     ||.|||||..|..|||||.|.|||||.||.|..||.||.|||||.||.||
BPUM_1082___y   1384 CAAAATAATATTGATAATTTATTTACACTGGCTCATGAATTTGGGCACTC   1433

BSNT_01930___   1383 CGTACACAGCTACTATACGAGAAAGCACCAGCCTTATCCATATGGCAATT   1432
                     .||.||||||||||||||.|||||||||||.||.|||||.|||||.||.|
BPUM_1082___y   1434 TGTCCACAGCTACTATACAAGAAAGCACCAACCATATCCGTATGGAAACT   1483

BSNT_01930___   1433 ACAGCATCTTTGTCGCGGAAGTTGCCTCTACGACAAATGAAGCGCTCCTT   1482
                     |||||||||||||.||.|||||.||.||.||||||||.||.|||.|.||.
BPUM_1082___y   1484 ACAGCATCTTTGTAGCTGAAGTAGCTTCCACGACAAACGAGGCGTTACTA   1533

BSNT_01930___   1483 GGCGAATATCTGCTGAACAATTTAGAGGATGAAAAACAGCGCTTATATAT   1532
                     ||.||||||.||.||||..||.||||.|||.||||.|||||.||.|||.|
BPUM_1082___y   1534 GGTGAATATTTGTTGAATCATCTAGATGATAAAAAGCAGCGTTTGTATGT   1583

BSNT_01930___   1533 TCTCAACCATATGCTTGAGGGCTTCAGGGGAACGGTTTTCAGACAAACGA   1582
                     .||.||.|||.||.|.||.||.||.||.|||||.||.||||||||.||||
BPUM_1082___y   1584 GCTAAATCATTTGTTAGAAGGATTTAGAGGAACAGTGTTCAGACAGACGA   1633

BSNT_01930___   1583 TGTTCGCTGAATTTGAACATCTGATCCATACAAAGGCGCAAGAAGGCGAG   1632
                     ||||.|||||.|||||.||||||||.|||...||.||.||||||||.|||
BPUM_1082___y   1634 TGTTTGCTGAGTTTGAGCATCTGATTCATGTGAAAGCACAAGAAGGAGAG   1683

BSNT_01930___   1633 CCGCTT--ACACCTGAGCTTC-TGACAAAGGTCTATTACGACCTGAATAA   1679
                       ||||  ||.||.|| .||| ||||.||..|.|||||||||||||||||
BPUM_1082___y   1684 --GCTTTAACGCCAGA-ATTCATGACGAACCTTTATTACGACCTGAATAA   1730

BSNT_01930___   1680 AAAGTATTTTGGAGACGGCATGGTGATTGATAAGGAAATCGGCCTTGAAT   1729
                     .|||||||||||||||||||||||..|.|||||.||||||||..|.||||
BPUM_1082___y   1731 GAAGTATTTTGGAGACGGCATGGTTGTGGATAAAGAAATCGGATTAGAAT   1780

BSNT_01930___   1730 GGTCGCGTATTCCGCACTTCTATTACAATTACTATGTGTATCAGTATGCG   1779
                     ||.||.|.||.||.||||||||.|||||.||.|||||.|||||.|||||.
BPUM_1082___y   1781 GGACGAGAATCCCTCACTTCTACTACAACTATTATGTCTATCAATATGCA   1830

BSNT_01930___   1780 ACAGGGTACAGCGCTGCCCAAGCATTAAGCAGCCAGAT-TTTGAAGGAAG   1828
                     |||||.||.||.|||||.||.||||||||||..||.|| ||.||| ||||
BPUM_1082___y   1831 ACAGGCTATAGTGCTGCACAGGCATTAAGCAAGCAAATCTTAGAA-GAAG   1879

BSNT_01930___   1829 GAAAGCCGGCGGTTGACCGTTATATTGACTTCCTGAAAGCGGGAAGCTCA   1878
                     ||||.||.|||||.||.||.||.|..||||||||.|||||.||||||||.
BPUM_1082___y   1880 GAAAACCTGCGGTGGAGCGCTACACAGACTTCCTTAAAGCAGGAAGCTCT   1929

BSNT_01930___   1879 CAATACCCGATTGATGTCCTGAAAAAAGCGGGTGTTGATATGACGTCTCC   1928
                     .|.|||||.|||.||||.|||||||||||.||||||||||||.|.||...
BPUM_1082___y   1930 GATTACCCAATTAATGTGCTGAAAAAAGCAGGTGTTGATATGGCTTCCAA   1979

BSNT_01930___   1929 AGAGCCAATCGAAGCCGCGTGCAAAATGTTTGAAGAAAAACTTGATGAAA   1978
                     |||.|||||||||||.||.||..||.||||.|||||||||.|..|.||||
BPUM_1082___y   1980 AGAACCAATCGAAGCAGCATGTCAATTGTTCGAAGAAAAATTAAAAGAAA   2029

BSNT_01930___   1979 TGGAAGAGCTGCTGATGAAAGTCAAGCAGTCT-TAA-------------   2013
                     ||||||||||                || ||| |||             
BPUM_1082___y   2030 TGGAAGAGCT----------------CA-TCTCTAAAACGGGTGAGTAA   2061


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