Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01926 and BPUM_1079
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:27
# Commandline: needle
# -asequence dna-align/BSNT_01926___mecA.1.24716.seq
# -bsequence dna-align/BPUM_1079___mecA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01926___mecA-BPUM_1079___mecA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01926___mecA-BPUM_1079___mecA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01926___mecA
# 2: BPUM_1079___mecA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 689
# Identity: 502/689 (72.9%)
# Similarity: 502/689 (72.9%)
# Gaps: 55/689 ( 8.0%)
# Score: 1832.5
#
#
#=======================================
BSNT_01926___ 1 ATGGAAATTGAAAGAATTAACGAGCATACAGTAAAATTTTATATGTCTTA 50
||||||||.||||||||.||.||.||||||||||||||||||||.||.||
BPUM_1079___m 1 ATGGAAATCGAAAGAATAAATGAACATACAGTAAAATTTTATATTTCCTA 50
BSNT_01926___ 51 CGGAGATATTGAAGATCGCGGTTTTGACAGAGAAGAAATTTGGTATAACC 100
|||.|||||||||||.|||||.||||||.|.|||||.|||||||||||.|
BPUM_1079___m 51 CGGTGATATTGAAGACCGCGGATTTGACCGTGAAGAGATTTGGTATAATC 100
BSNT_01926___ 101 GTGAGCGCAGTGAAGAACTATTCTGGGAAGTCATGGATGAAGTTCATGAA 150
|.||.|||||||||||.||.||.||||||||.|||||.|||||.||.|||
BPUM_1079___m 101 GCGAACGCAGTGAAGAGCTGTTTTGGGAAGTAATGGACGAAGTGCACGAA 150
BSNT_01926___ 151 GAAGAGGAATTCGCTGTGGAAGGCCCACTTTGGATTCAAGTTCAGGCACT 200
|||||.|||||.||.||.||.||.|||||||||||||||||.||||||||
BPUM_1079___m 151 GAAGAAGAATTTGCAGTTGAGGGACCACTTTGGATTCAAGTGCAGGCACT 200
BSNT_01926___ 201 GGACAAAGGATTAGAAATCATCGTCACAAAAGCCCAGCTTTCCAAAGACG 250
.||||||||..|.|||||..||||.||.||||||||.|||||.|||||.|
BPUM_1079___m 201 TGACAAAGGTCTTGAAATTGTCGTGACGAAAGCCCAACTTTCTAAAGATG 250
BSNT_01926___ 251 GACAAAAGCTCGAACTGCCGATTCCTGAGGATAAAAAGCAAGAACCAGCA 300
||||||||||||||.||||||||||.||.||||||| ||||.|.|.||
BPUM_1079___m 251 GACAAAAGCTCGAATTGCCGATTCCAGAAGATAAAA---AAGATCAAACA 297
BSNT_01926___ 301 TCTGAGGA---TCTTGACGCCTTGCTGGATGATTTCCAGAAAGAAGAGCA 347
..|||.|| |||.|||||..|.||.||||||||.||.|||||||||||
BPUM_1079___m 298 GATGAAGAAAGTCTAGACGCACTACTTGATGATTTTCAAAAAGAAGAGCA 347
BSNT_01926___ 348 AGCCGTCAATCAGGAA---------GAGAAGGAGCAAA-------AGCTT 381
.| ||||.||| |||||||| |||| |.|||
BPUM_1079___m 348 GG------ATCAAGAAGACCATAATGAGAAGGA-CAAAAAACTTCAACTT 390
BSNT_01926___ 382 CAATTTGTCTTGCGATTTGGCGATTTTGAGGATGTTATTTCTCTATCTAA 431
||||||||.|||..|.|.|..||.|||||.|||.|.|||.|.||.|||.|
BPUM_1079___m 391 CAATTTGTGTTGAAAATGGATGACTTTGAAGATTTGATTGCACTTTCTCA 440
BSNT_01926___ 432 ATTGAACGTTAACGGA----AGCAAAACGACTTTATATTCGTTTGAGAAC 477
|||.||..|..| ||| |.| ||.|.|||||||||||||||.|||
BPUM_1079___m 441 ATTAAATATGCA-GGATTTTACC---ACAAGTTTATATTCGTTTGAAAAC 486
BSNT_01926___ 478 CGATATTATTTATATGTAGATTTTTGCA-----ATATGACTGATGAAGAG 522
||.||||||.|||||||.|| .||.|| ||.||.|.|||||..|.
BPUM_1079___m 487 CGTTATTATCTATATGTTGA--CTTCCACGAGGATTTGTCAGATGAGCAA 534
BSNT_01926___ 523 GTTGAAAATCAGCTAAGCATCCTGCTGGAGTACGCAACTGAATCCTCAA- 571
||.||.|||.||||.|||||..||||.||.||.||...|||||| |
BPUM_1079___m 535 GTGGAGAATAAGCTCAGCATTTTGCTTGAATATGCTCATGAATC----AG 580
BSNT_01926___ 572 ---TCAGCATACACCGTCTTGAAGAGTACGGCAAGCTGATTATTTCAGAG 618
|||||||..||.|.||..||||.|||||..||||||||||...||..
BPUM_1079___m 581 TGGTCAGCATTTACAGACTGAAAGAATACGGTCAGCTGATTATCGAAGGA 630
BSNT_01926___ 619 CATGCTCTAGAAGCGATAAAAAAACACTTTGCATCATAG 657
.||||.||.|||.||||..||.|.|||||..|.|.|
BPUM_1079___m 631 AATGCCCTTGAAACGATTCAACAGCACTTCTCGTAA--- 666
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