Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01918 and BPUM_1074
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:27
# Commandline: needle
# -asequence dna-align/BSNT_01918___oppF.1.24716.seq
# -bsequence dna-align/BPUM_1074___oppF.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01918___oppF-BPUM_1074___oppF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01918___oppF-BPUM_1074___oppF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01918___oppF
# 2: BPUM_1074___oppF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 983
# Identity: 676/983 (68.8%)
# Similarity: 676/983 (68.8%)
# Gaps: 118/983 (12.0%)
# Score: 2346.5
#
#
#=======================================
BSNT_01918___ 1 TTGACTGAAAAA----CTATT---------AGAAATC--AAACA----TT 31
||||.||||||| .|||| |..|||| ||.|| ||
BPUM_1074___o 1 TTGAGTGAAAAAGATGTTATTTTACAGGTGAATAATCTTAAGCAATATTT 50
BSNT_01918___ 32 TAAAACAGCACTTTGTCACGCCGAGGG----------GAACGGTTAAGGC 71
||| ||| ||| ||| ||.||.||
BPUM_1074___o 51 TAA----------TGT--------GGGCAAACCAAATGAA--GTAAAAGC 80
BSNT_01918___ 72 TGTAGATGAT-TTATCATTTGATATCTATAAAGGTGAAACATTAGGGCTG 120
|||.|||||| |||.| ||.|||||.||||.|||.|||||.||.|||||.
BPUM_1074___o 81 TGTTGATGATGTTAGC-TTCGATATTTATAGAGGAGAAACTTTGGGGCTA 129
BSNT_01918___ 121 GTTGGTGAATCTGGCTGCGGTAAATCGACAACAGGCCGAAGCATTATCCG 170
||.|||||.|||||.||||||||.|||||.||.||..||||.||.||.||
BPUM_1074___o 130 GTAGGTGAGTCTGGTTGCGGTAAGTCGACTACTGGAAGAAGTATCATTCG 179
BSNT_01918___ 171 GCTGTACGAAGCAACCGATGGTGAGGTGCTGTTTAACGGTGAAAATGTGC 220
..||||..|.|||||.|||||||||||..|.|||||.||..|.|||||.|
BPUM_1074___o 180 TTTGTATAATGCAACAGATGGTGAGGTTATTTTTAATGGACAGAATGTTC 229
BSNT_01918___ 221 ACGGGAGAAAATCGCGGAAAAAGCTGCT-----GGAATTCAACCGCAAAA 265
|.|..|.||||||| |..||||.| |.||||.||.||.||||
BPUM_1074___o 230 ATGATAAAAAATCG-----ACTGCTGATCTGAAGCAATTTAATCGAAAAA 274
BSNT_01918___ 266 TGCAGATGATTTTCCAAGACCCCTATGCATCCCTGAATCCGAGAATGACA 315
||||.|||||.||.||.||.||.|||||.||.||.|||||.|||||||.|
BPUM_1074___o 275 TGCAAATGATCTTTCAGGATCCATATGCCTCACTCAATCCAAGAATGAAA 324
BSNT_01918___ 316 GTTGCTGATATTATTGCTGAAGGTCTTGATATTCATAAGCTGGCAAAAAC 365
||||..||.||.|||||.|||||..|.||.||||||...||.||||||||
BPUM_1074___o 325 GTTGAAGACATCATTGCAGAAGGCATCGACATTCATGGCCTAGCAAAAAC 374
BSNT_01918___ 366 GAAA----------AAAGAGCGGATGCAGAGGGTTCATG-AACTATTG-- 402
||| |||||||| || || |.|.||||
BPUM_1074___o 375 -AAAGCAAGCACGTAAAGAGCG--TG-----------TGTACCAATTGCT 410
BSNT_01918___ 403 -GAAACAGTTGGTTTAAACAAGGAACACGCGAACCGCTATCCGCATGAAT 451
|||||.|||||.||.|||||.||.||.||.|||.|.||.||||||||||
BPUM_1074___o 411 TGAAACTGTTGGCTTGAACAAAGAGCATGCAAACAGGTACCCGCATGAAT 460
BSNT_01918___ 452 TTTCCGGCGGCCAGCGCCAAAGAATCGGGATTGCCAGAGCTCTTGCTGTT 501
|.||.||.||.||..|.||..|.||.|||||||||.|.||..|.||.|||
BPUM_1074___o 461 TCTCTGGTGGTCAAAGGCAGCGTATTGGGATTGCCCGTGCATTAGCGGTT 510
BSNT_01918___ 502 GATCCGGAATTCATTATCGCGGATGAGCCGATTTCCGCTTTGGATGTATC 551
||.||.||.||||||||.||.|||||.||.||.||.||.||.|||||.||
BPUM_1074___o 511 GAACCAGATTTCATTATTGCCGATGAACCAATCTCTGCATTAGATGTGTC 560
BSNT_01918___ 552 CATTCAAGCGCAGGTCGTGAATTTAATGAAAGAACTGCAAAAAGAAAAAG 601
.||.|||||.||||||||.||.|||||||||||.||.|||.|||||||||
BPUM_1074___o 561 GATCCAAGCACAGGTCGTCAACTTAATGAAAGAGCTTCAAGAAGAAAAAG 610
BSNT_01918___ 602 GGCTCACATACCTGTTTATTGCCCACGATTTATCGATGGTCAAATACATC 651
|..|.||.|||.|.||.||||||||.||..|.||.|||||.|||||||||
BPUM_1074___o 611 GCTTAACGTACTTATTCATTGCCCATGACCTGTCTATGGTAAAATACATC 660
BSNT_01918___ 652 AGTGACCGCATTGGCGTCATGTATTTCGGGAAACTGGTTGAGCTTGCGCC 701
||.||.|||||||||||.|||||||||||||||.||||.|||||.||.||
BPUM_1074___o 661 AGCGATCGCATTGGCGTAATGTATTTCGGGAAATTGGTCGAGCTGGCACC 710
BSNT_01918___ 702 GGCAGATGAGCTTTATGAAAATCCGCTTCACCCATATACAAAATCATTGC 751
.||..||||..|.||.|||||.||||||||.|||||||||||||||||.|
BPUM_1074___o 711 AGCGAATGAATTATACGAAAACCCGCTTCATCCATATACAAAATCATTAC 760
BSNT_01918___ 752 TTTCTGCGATTCCGCTTCCAGATCCAGACTATGAGAGAAATCGCGTTCGC 801
|.||||||||||||||||||||||||||.||||||.|.||.|||...||.
BPUM_1074___o 761 TATCTGCGATTCCGCTTCCAGATCCAGATTATGAGCGTAACCGCAAACGA 810
BSNT_01918___ 802 CAGAAATATGATCCGTCCGTCCATCAATTAAAGGATGGGGAAACGA---- 847
...||.||||||||.||.||.|| .||||| |||||
BPUM_1074___o 811 ATCAAGTATGATCCATCTGTTCA-----CAAAGG-------AACGAACAC 848
BSNT_01918___ 848 TGGAATTCCGTGAAGTCAAACCGGGACATTTTGTGATGTGCACGGAAGCC 897
| ||.|||||||||||.||.||.||.||.|||||||..|||||.||.|..
BPUM_1074___o 849 T-GAGTTCCGTGAAGTGAAGCCAGGCCACTTTGTGAGCTGCACAGAGGAA 897
BSNT_01918___ 898 GAATTTAAAGCTTTT------------TCATGA 918
|||||.||||...|| ||||.|
BPUM_1074___o 898 GAATTCAAAGAGCTTCAGGCAAAACAATCATAA 930
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