Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01915 and BPUM_1071

See Amino acid alignment / Visit BSNT_01915 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:26
# Commandline: needle
#    -asequence dna-align/BSNT_01915___oppB.1.24716.seq
#    -bsequence dna-align/BPUM_1071___oppB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01915___oppB-BPUM_1071___oppB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01915___oppB-BPUM_1071___oppB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01915___oppB
# 2: BPUM_1071___oppB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1085
# Identity:     569/1085 (52.4%)
# Similarity:   569/1085 (52.4%)
# Gaps:         304/1085 (28.0%)
# Score: 1164.0
# 
#
#=======================================

BSNT_01915___      1 TTGCTAAAATA--TATCGGA--AGACGCTTAGTCTATATGATTATCACAC     46
                     .||||.|||||  ||    |  |||||..|.|.||..|||.|..|.||.|
BPUM_1071___o      1 ATGCTGAAATACTTA----ATTAGACGGGTTGGCTTCATGGTCGTTACCC     46

BSNT_01915___     47 TATTTGTGATTGTAACTGTGACATTCTTCTTAATGCAAGCAGCA--CCGG     94
                     |.||..|.|||||..|..|.||.||.|||||||||.||  ..||  ||||
BPUM_1071___o     47 TCTTCATCATTGTTTCAATCACTTTTTTCTTAATGAAA--CTCATTCCGG     94

BSNT_01915___     95 GCGGGCCATTTTCAGGTGAGAAAAAGCTTCCGCCTGAAATT----GAAGC    140
                     |....||.|||        |..||.|||     |..|||||    |||||
BPUM_1071___o     95 GTTCTCCTTTT--------GTTAATGCT-----CAAAAATTGTCAGAAGC    131

BSNT_01915___    141 A----------AACTTAAATACGCACTATGGCTTGGACAAGCCGCTGTT-    179
                     |          .|||| |||.|..|.|||||..|.||..|||  ||.|| 
BPUM_1071___o    132 ACAACAAGCTGTACTT-AATGCAAAATATGGGCTAGATCAGC--CTATTC    178

BSNT_01915___    180 -TGTACAATA-TGTCAGTTATTTGA--AAT-CAGTTGCAATGTGGGATTT    224
                      .||.||||| |.||| .||.||||  ||| ||  |.||.|| |.|||||
BPUM_1071___o    179 CAGTTCAATACTTTCA-CTACTTGATTAATACA--TTCACTG-GAGATTT    224

BSNT_01915___    225 CGGACCATCATTTAAATATAAAGGTCAGAGTGTTAACGACCTGATCAATT    274
                     .||....|||||..|||                        |.|.||||.
BPUM_1071___o    225 AGGTGTTTCATTCCAAT------------------------TCAACAATA    250

BSNT_01915___    275 CAGGTTTCCCCGT--------TTCATTCACTC----TTGGAGCAGAAGCT    312
                     |      |.||||        |||.||||..|    |.|||.||...|||
BPUM_1071___o    251 C------CTCCGTAACAGAACTTCTTTCATACCGAGTAGGACCATCTGCT    294

BSNT_01915___    313 ATTCT---CCT-----CGCTT----TAG-------CGTTAGGTGTATTGT    343
                     .|.||   |||     ||.||    |||       .||| |||.|.||.|
BPUM_1071___o    295 GTCCTAGGCCTTCAAGCGATTATTATAGGAACGATTGTT-GGTATCTTCT    343

BSNT_01915___    344 TTGGAGTCATTGCAGCTCTTTA--CCATAATAAGTGGCAGGATTATACCG    391
                     |.|||||..|||.||  |||||  .||.||.|..|||...||||||    
BPUM_1071___o    344 TGGGAGTAGTTGGAG--CTTTAAGGCAGAACACATGGATAGATTAT----    387

BSNT_01915___    392 TC-GCGATTTT------------------AACGATA-----TTTGGTAT-    416
                     || ||.|.|||                  |.|.|||     |||.|||| 
BPUM_1071___o    388 TCTGCTACTTTCTTGGCAGTTATCGGTAAATCAATACCGAGTTTTGTATT    437

BSNT_01915___    417 -----------TTCAGTTCCAAGCTTTATCATGGCGGCTGTTCTGCAATA    455
                                ||||||     .||||   ||.||||      ||.||| 
BPUM_1071___o    438 CGCGGGATTACTTCAGT-----ACTTT---ATTGCGG------TGAAAT-    472

BSNT_01915___    456 TGTG--TTCT-CCA--TGAAGCTTGGGCT-GTTTCCGGTCGCGGGGTGGG    499
                     ||.|  |.|| |||  |.||..||||..| |.|||              |
BPUM_1071___o    473 TGGGATTACTACCAACTCAATTTTGGAATGGATTC--------------G    508

BSNT_01915___    500 AGTCCTGGGCATACACCTTTTTGCCTTCAATCGCACTTGCTTCCATGCCG    549
                     |||       |||||  .|||||||..||||.|||.|.|||         
BPUM_1071___o    509 AGT-------ATACA--ATTTTGCCCACAATAGCATTAGCT---------    540

BSNT_01915___    550 ATGGCGTTC---ATTGCCAGACTTT---CCCG-TTCAAGC--------AT    584
                     ||   ||||   ||..|||   |||   |.|| ||.|.||        ||
BPUM_1071___o    541 AT---GTTCCCTATCTCCA---TTTGTGCTCGCTTTATGCGAACAGAAAT    584

BSNT_01915___    585 GATCGAAGT--GTTAAACAGTGATTATATCCGCACTGCGAAA-GCGAAAG    631
                     |.|.|||||  .|.|.|||  |||||||| ...|||..|||| ||.||||
BPUM_1071___o    585 GGTTGAAGTTCTTGAGACA--GATTATAT-TTTACTAGGAAAGGCCAAAG    631

BSNT_01915___    632 -----GGCTGTCTCG---TCCAGCAGTTACTGTGCGGCACGCCATTCGAA    673
                          ||||.|.|||   |  ||||.|||      .|||.||.||..|||
BPUM_1071___o    632 GAGCAGGCTATTTCGAATT--AGCATTTA------AGCATGCAATGAGAA    673

BSNT_01915___    674 ACGCGCTTTTGCCGGTTGTTACA-TACATGGGCCCGATGGCCGCCCAGGT    722
                     |.|||.|..|.||.||||||||| |.|.|||.||         .|.|..|
BPUM_1071___o    674 ATGCGTTGATCCCTGTTGTTACAGTTCTTGGTCC---------ACTAACT    714

BSNT_01915___    723 CTTA--------ACGGGAAGTTTTATCATTGAAACGATTTTTGGGATCCC    764
                     .|||        ||||||..|.|..|.||.||.|..||.||....||.||
BPUM_1071___o    715 GTTAGTTTAATGACGGGATCTCTCGTAATAGAGAAAATCTTCTCAATTCC    764

BSNT_01915___    765 GGGTCTTGGTTCCCACTTCGTAAACAG-TATTAC---AAACCGTGATTAT    810
                     .||..|||||...||.||.||.|| || ||||||   |||   |||.|||
BPUM_1071___o    765 TGGAATTGGTGAGCAGTTTGTTAA-AGCTATTACTGTAAA---TGACTAT    810

BSNT_01915___    811 ACAGTCATTATGGGTGTAACGGTGTTCTTCAGTGTCATCCTGCTATTGTG    860
                     .||||.||||||||...|||..|.||.|||...||  ||.|..|.|||||
BPUM_1071___o    811 CCAGTTATTATGGGAACAACAATTTTATTCGCCGT--TCTTTTTGTTGTG    858

BSNT_01915___    861 --TGTATTAATCGTAGACGTGCTTTACGGCATTATTGATCCAAGAATCAA    908
                       ||||||.||.||.||..|.||.||.||.|||||.|||||.||||    
BPUM_1071___o    859 GTTGTATTTATTGTCGATATTCTATATGGAATTATCGATCCGAGAA----    904

BSNT_01915___    909 GCTTTC-CAAAGCA------AAGAAAGGAGCCTAG    936
                        ||| ...||||      ||.|||.||      
BPUM_1071___o    905 ---TTCGTGTAGCAGGGGGTAACAAATGA------    930


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