Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01915 and BPUM_1071
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:26
# Commandline: needle
# -asequence dna-align/BSNT_01915___oppB.1.24716.seq
# -bsequence dna-align/BPUM_1071___oppB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01915___oppB-BPUM_1071___oppB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01915___oppB-BPUM_1071___oppB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01915___oppB
# 2: BPUM_1071___oppB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1085
# Identity: 569/1085 (52.4%)
# Similarity: 569/1085 (52.4%)
# Gaps: 304/1085 (28.0%)
# Score: 1164.0
#
#
#=======================================
BSNT_01915___ 1 TTGCTAAAATA--TATCGGA--AGACGCTTAGTCTATATGATTATCACAC 46
.||||.||||| || | |||||..|.|.||..|||.|..|.||.|
BPUM_1071___o 1 ATGCTGAAATACTTA----ATTAGACGGGTTGGCTTCATGGTCGTTACCC 46
BSNT_01915___ 47 TATTTGTGATTGTAACTGTGACATTCTTCTTAATGCAAGCAGCA--CCGG 94
|.||..|.|||||..|..|.||.||.|||||||||.|| ..|| ||||
BPUM_1071___o 47 TCTTCATCATTGTTTCAATCACTTTTTTCTTAATGAAA--CTCATTCCGG 94
BSNT_01915___ 95 GCGGGCCATTTTCAGGTGAGAAAAAGCTTCCGCCTGAAATT----GAAGC 140
|....||.||| |..||.||| |..||||| |||||
BPUM_1071___o 95 GTTCTCCTTTT--------GTTAATGCT-----CAAAAATTGTCAGAAGC 131
BSNT_01915___ 141 A----------AACTTAAATACGCACTATGGCTTGGACAAGCCGCTGTT- 179
| .|||| |||.|..|.|||||..|.||..||| ||.||
BPUM_1071___o 132 ACAACAAGCTGTACTT-AATGCAAAATATGGGCTAGATCAGC--CTATTC 178
BSNT_01915___ 180 -TGTACAATA-TGTCAGTTATTTGA--AAT-CAGTTGCAATGTGGGATTT 224
.||.||||| |.||| .||.|||| ||| || |.||.|| |.|||||
BPUM_1071___o 179 CAGTTCAATACTTTCA-CTACTTGATTAATACA--TTCACTG-GAGATTT 224
BSNT_01915___ 225 CGGACCATCATTTAAATATAAAGGTCAGAGTGTTAACGACCTGATCAATT 274
.||....|||||..||| |.|.||||.
BPUM_1071___o 225 AGGTGTTTCATTCCAAT------------------------TCAACAATA 250
BSNT_01915___ 275 CAGGTTTCCCCGT--------TTCATTCACTC----TTGGAGCAGAAGCT 312
| |.|||| |||.||||..| |.|||.||...|||
BPUM_1071___o 251 C------CTCCGTAACAGAACTTCTTTCATACCGAGTAGGACCATCTGCT 294
BSNT_01915___ 313 ATTCT---CCT-----CGCTT----TAG-------CGTTAGGTGTATTGT 343
.|.|| ||| ||.|| ||| .||| |||.|.||.|
BPUM_1071___o 295 GTCCTAGGCCTTCAAGCGATTATTATAGGAACGATTGTT-GGTATCTTCT 343
BSNT_01915___ 344 TTGGAGTCATTGCAGCTCTTTA--CCATAATAAGTGGCAGGATTATACCG 391
|.|||||..|||.|| ||||| .||.||.|..|||...||||||
BPUM_1071___o 344 TGGGAGTAGTTGGAG--CTTTAAGGCAGAACACATGGATAGATTAT---- 387
BSNT_01915___ 392 TC-GCGATTTT------------------AACGATA-----TTTGGTAT- 416
|| ||.|.||| |.|.||| |||.||||
BPUM_1071___o 388 TCTGCTACTTTCTTGGCAGTTATCGGTAAATCAATACCGAGTTTTGTATT 437
BSNT_01915___ 417 -----------TTCAGTTCCAAGCTTTATCATGGCGGCTGTTCTGCAATA 455
|||||| .|||| ||.|||| ||.|||
BPUM_1071___o 438 CGCGGGATTACTTCAGT-----ACTTT---ATTGCGG------TGAAAT- 472
BSNT_01915___ 456 TGTG--TTCT-CCA--TGAAGCTTGGGCT-GTTTCCGGTCGCGGGGTGGG 499
||.| |.|| ||| |.||..||||..| |.||| |
BPUM_1071___o 473 TGGGATTACTACCAACTCAATTTTGGAATGGATTC--------------G 508
BSNT_01915___ 500 AGTCCTGGGCATACACCTTTTTGCCTTCAATCGCACTTGCTTCCATGCCG 549
||| ||||| .|||||||..||||.|||.|.|||
BPUM_1071___o 509 AGT-------ATACA--ATTTTGCCCACAATAGCATTAGCT--------- 540
BSNT_01915___ 550 ATGGCGTTC---ATTGCCAGACTTT---CCCG-TTCAAGC--------AT 584
|| |||| ||..||| ||| |.|| ||.|.|| ||
BPUM_1071___o 541 AT---GTTCCCTATCTCCA---TTTGTGCTCGCTTTATGCGAACAGAAAT 584
BSNT_01915___ 585 GATCGAAGT--GTTAAACAGTGATTATATCCGCACTGCGAAA-GCGAAAG 631
|.|.||||| .|.|.||| |||||||| ...|||..|||| ||.||||
BPUM_1071___o 585 GGTTGAAGTTCTTGAGACA--GATTATAT-TTTACTAGGAAAGGCCAAAG 631
BSNT_01915___ 632 -----GGCTGTCTCG---TCCAGCAGTTACTGTGCGGCACGCCATTCGAA 673
||||.|.||| | ||||.||| .|||.||.||..|||
BPUM_1071___o 632 GAGCAGGCTATTTCGAATT--AGCATTTA------AGCATGCAATGAGAA 673
BSNT_01915___ 674 ACGCGCTTTTGCCGGTTGTTACA-TACATGGGCCCGATGGCCGCCCAGGT 722
|.|||.|..|.||.||||||||| |.|.|||.|| .|.|..|
BPUM_1071___o 674 ATGCGTTGATCCCTGTTGTTACAGTTCTTGGTCC---------ACTAACT 714
BSNT_01915___ 723 CTTA--------ACGGGAAGTTTTATCATTGAAACGATTTTTGGGATCCC 764
.||| ||||||..|.|..|.||.||.|..||.||....||.||
BPUM_1071___o 715 GTTAGTTTAATGACGGGATCTCTCGTAATAGAGAAAATCTTCTCAATTCC 764
BSNT_01915___ 765 GGGTCTTGGTTCCCACTTCGTAAACAG-TATTAC---AAACCGTGATTAT 810
.||..|||||...||.||.||.|| || |||||| ||| |||.|||
BPUM_1071___o 765 TGGAATTGGTGAGCAGTTTGTTAA-AGCTATTACTGTAAA---TGACTAT 810
BSNT_01915___ 811 ACAGTCATTATGGGTGTAACGGTGTTCTTCAGTGTCATCCTGCTATTGTG 860
.||||.||||||||...|||..|.||.|||...|| ||.|..|.|||||
BPUM_1071___o 811 CCAGTTATTATGGGAACAACAATTTTATTCGCCGT--TCTTTTTGTTGTG 858
BSNT_01915___ 861 --TGTATTAATCGTAGACGTGCTTTACGGCATTATTGATCCAAGAATCAA 908
||||||.||.||.||..|.||.||.||.|||||.|||||.||||
BPUM_1071___o 859 GTTGTATTTATTGTCGATATTCTATATGGAATTATCGATCCGAGAA---- 904
BSNT_01915___ 909 GCTTTC-CAAAGCA------AAGAAAGGAGCCTAG 936
||| ...|||| ||.|||.||
BPUM_1071___o 905 ---TTCGTGTAGCAGGGGGTAACAAATGA------ 930
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