Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01906 and BPUM_1063

See Amino acid alignment / Visit BSNT_01906 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:26
# Commandline: needle
#    -asequence dna-align/BSNT_01906___appB.1.24716.seq
#    -bsequence dna-align/BPUM_1063___appB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01906___appB-BPUM_1063___appB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01906___appB-BPUM_1063___appB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01906___appB
# 2: BPUM_1063___appB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 959
# Identity:     713/959 (74.3%)
# Similarity:   713/959 (74.3%)
# Gaps:          16/959 ( 1.7%)
# Score: 2542.0
# 
#
#=======================================

BSNT_01906___      1 ATGGCTGCATATATTATCAGAAGAACCTTAATGTCTATCCCGATTTTATT     50
                     ||||.|.|||||||.||.|||||.||.||..|.||.||.||.||.|||||
BPUM_1063___a      1 ATGGTTACATATATCATTAGAAGGACATTGCTTTCCATTCCCATCTTATT     50

BSNT_01906___     51 GGGAATTACGATTTTATCATTTGTTATCATGAAAGCCGCGCCCGGAGATC    100
                     .||.|||||.|||||.||.||.|..||.||||||||.||.||.||.||||
BPUM_1063___a     51 CGGGATTACCATTTTGTCCTTCGCCATTATGAAAGCAGCACCAGGCGATC    100

BSNT_01906___    101 CGATGACATTAATGATGGACCCGAAAATCAG-CCAGGCTGACAGAGAGCA    149
                     |.|||.||.|.|||||||||||.|..||.|| .|| ||.|||.|.||  |
BPUM_1063___a    101 CAATGTCACTTATGATGGACCCAACCATTAGTGCA-GCAGACCGGGA--A    147

BSNT_01906___    150 G--TTTATTGAAAAATACGGTCTGAATGATCCTCAGTACGTTCAATATTT    197
                     |  ||||||||.||.|||||..||||.||||||.|.||.||.||.|||.|
BPUM_1063___a    148 GCTTTTATTGATAAGTACGGCTTGAACGATCCTGAATATGTGCAGTATAT    197

BSNT_01906___    198 AAAGTGGCTAGGCAACATGGTGCAGGGTGATTTCGGAACGTCTATTGTCA    247
                     .||.|||||.|||||.|||.|.||.|||||.||.||.||.||.|||||.|
BPUM_1063___a    198 GAAATGGCTTGGCAATATGCTTCAAGGTGACTTTGGCACCTCCATTGTGA    247

BSNT_01906___    248 GAAAAGGAACGCCTGTTTCAGAATTGATTATGGCAAGACTACCCAATACG    297
                     .|||.||||||||.||..|.||.||||||.|.||.||.||.||.|||||.
BPUM_1063___a    248 AAAAGGGAACGCCCGTGGCTGATTTGATTTTTGCTAGGCTGCCAAATACC    297

BSNT_01906___    298 CTCCTGCTGATGCTGGTTTCAACGATT-TTGGCTCTTATGATTTCTATTC    346
                     |||.|.||.|||.|..||||.|| ||| .|.||.||.||.||..|.||.|
BPUM_1063___a    298 CTCATCCTCATGATTTTTTCTAC-ATTAGTCGCCCTGATTATCGCCATCC    346

BSNT_01906___    347 CGTTCGGTGTCCTGTCGGCAAAGCGGCCGTATTCAAAAATCGACTATGGC    396
                     |.||||||||.||.||.|||||.||.||.|||.||||..|.|||||.|||
BPUM_1063___a    347 CATTCGGTGTTCTTTCAGCAAAACGTCCATATACAAAGCTAGACTACGGC    396

BSNT_01906___    397 ATTACATTTACCTCGTTTATAGGTCTGGCTATTCCAAACTTTTGGTTTGG    446
                     ||||||.||||.||.|||||.||.|||||||||||.||.|||||||||||
BPUM_1063___a    397 ATTACAGTTACATCTTTTATCGGACTGGCTATTCCGAATTTTTGGTTTGG    446

BSNT_01906___    447 ATTAATTTTGATTATGGTGTTATCGGTAAATCTCGGCTGGTTTCCAACCG    496
                     |.|.|||.|.||||||||||||||.||.|||.|.||.|||||.||.||.|
BPUM_1063___a    447 ACTCATTCTAATTATGGTGTTATCTGTGAATTTAGGATGGTTCCCGACAG    496

BSNT_01906___    497 --GGGGTGTCGAGACGCTGAATACCGAATTCAATATATTTGACCGGATTC    544
                       ||.|||||  .||..|.||.|||||.||.|||.|||||||||||.|.|
BPUM_1063___a    497 GCGGCGTGTC--TACCTTAAACACCGATTTTAATCTATTTGACCGGCTCC    544

BSNT_01906___    545 ATCATTTAATTCTGCCTGCATTCGTTCTAGCTACAGCTGACATGGCCGGA    594
                     ||||..|.|||.|.||.||.||.|||.||||.||.|||||.|||||.||.
BPUM_1063___a    545 ATCACATCATTTTACCAGCCTTTGTTTTAGCAACCGCTGATATGGCGGGG    594

BSNT_01906___    595 CTGACGAGATACACGAGATCCAATATGCTTGATGTATTAAATCAAGATTA    644
                     ||.|||.|.|||||.||.||.|..|||||||||||..|.|..||.|||||
BPUM_1063___a    595 CTCACGCGGTACACAAGGTCGAGCATGCTTGATGTCATGAGGCAGGATTA    644

BSNT_01906___    645 TATTCGCACAGCGAGAGCAAAAGGATTTAAAGAGAACAGAGTGCTATTTA    694
                     .|||||.||.||.|||||.|||||.|||..|||.||||.|||..|.||.|
BPUM_1063___a    645 CATTCGTACCGCAAGAGCGAAAGGCTTTCGAGAAAACAAAGTCATTTTCA    694

BSNT_01906___    695 AACATGGATTGAGGAATGCATTATTA--CCCGTCATTACAATTTTCGGTT    742
                     |.||.|||||.||.||||  .|.|||  ||.|||||||||||||||||.|
BPUM_1063___a    695 AGCACGGATTAAGAAATG--GTCTTATGCCTGTCATTACAATTTTCGGAT    742

BSNT_01906___    743 TGATGATTCCTTCATTTATCGGCGGATCTGTCGTTGTCGAACAAATTTTC    792
                     ||||||||||.||.|||||.|||||..|.|||||.||.||||||||.|||
BPUM_1063___a    743 TGATGATTCCATCCTTTATTGGCGGCGCAGTCGTGGTGGAACAAATCTTC    792

BSNT_01906___    793 ACTTGGCCGGGATTAGGAAAGCTGTTTGTCGATTCAGCATTCCAGCGCGA    842
                     ||.|||||.||||||||.|||.|||||.|.|||||.||.||...|.|.||
BPUM_1063___a    793 ACCTGGCCAGGATTAGGGAAGTTGTTTATTGATTCTGCCTTTTCGAGAGA    842

BSNT_01906___    843 TTATCCGGTTATCATGGCAATGACTGTGATCTCGGCGGTTCTTGTCGTTG    892
                     |||||||||.||.|||||.||||||||.||.||.||.||.||.||.||.|
BPUM_1063___a    843 TTATCCGGTCATTATGGCGATGACTGTTATTTCCGCAGTGCTCGTGGTGG    892

BSNT_01906___    893 TCGGAAACCTCATTGCAGACATCCTTTACGCGATTGTTGATCCGCGGATC    942
                     |.|||||..|.|||||.||.||.||.||.|||||.|||||||||||.||.
BPUM_1063___a    893 TTGGAAATTTAATTGCGGATATTCTCTATGCGATCGTTGATCCGCGTATT    942

BSNT_01906___    943 GAATATTAA    951
                     ||||||||.
BPUM_1063___a    943 GAATATTAG    951


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_01906 and BPUM_1063

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
