Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01885 and BPUM_1048
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:24
# Commandline: needle
# -asequence dna-align/BSNT_01885___argF.1.24716.seq
# -bsequence dna-align/BPUM_1048___argF.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01885___argF-BPUM_1048___argF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01885___argF-BPUM_1048___argF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01885___argF
# 2: BPUM_1048___argF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1011
# Identity: 686/1011 (67.9%)
# Similarity: 686/1011 (67.9%)
# Gaps: 111/1011 (11.0%)
# Score: 2237.0
#
#
#=======================================
BSNT_01885___ 1 ATG---CACACAG-TGAC--GCAAACCAGTTTATACGGAAAAGATTTATT 44
||| || || |||| ||||.|.|..||||||||||||||.||.||
BPUM_1048___a 1 ATGAGTCA---AGTTGACCTGCAACCGACATTATACGGAAAAGACTTTTT 47
BSNT_01885___ 45 AACGTTAAAGGACCTTAGTGAAGAGGATATAAACG-CCTTGC-------- 85
|.|.|||||.|| ||..|.| ||.||.| |.||||
BPUM_1048___a 48 ATCATTAAAAGA--TTTCTCA-------ATCAATGACATTGCTTATTTAA 88
BSNT_01885___ 86 TCGCAGAAGCCGGTGAGCTGAAACAAAA-------CAAAATTCAGCCTAT 128
|.|.|.||||.|..||..|||||||||| |||.||| |
BPUM_1048___a 89 TTGAAAAAGCAGAAGAAATGAAACAAAACCCATACCAAGATT-------T 131
BSNT_01885___ 129 ATTCCATGGCAAAACCTTGGCGATGATTTTTGAAAAATCATCAACGCGGA 178
||||.|.||.|||||.||.||||||||||||||||||||.||||||.|.|
BPUM_1048___a 132 ATTCAAAGGGAAAACGTTAGCGATGATTTTTGAAAAATCGTCAACGAGAA 181
BSNT_01885___ 179 CACGTGTTTCTTTTGAAGCGGGCATGGCACAGCTTGGCGGGA-ACGCCCT 227
|.|||||.||.|||||||||||.|||.|.|||||||| |||| |.||.||
BPUM_1048___a 182 CCCGTGTATCATTTGAAGCGGGAATGACGCAGCTTGG-GGGACATGCGCT 230
BSNT_01885___ 228 CTTTCTAAGC-CAGAAAGATCTGCAGCTGGGGCGCGGTGAGACTGTCGCT 276
|||.||.||| || ||.|||.||||..|.||..|.||.||.||..||..|
BPUM_1048___a 231 CTTCCTCAGCTCA-AATGATTTGCAAATCGGCAGAGGAGAAACAATCAGT 279
BSNT_01885___ 277 GATACGGCAAAAGTGCTGTCAGGCTATGTGGATGCCATCATGATCCGGAC 326
|||||.||..|.|||||.||.||||||||.||.|.|||.|||||.||.||
BPUM_1048___a 280 GATACAGCGCAGGTGCTATCTGGCTATGTAGACGGCATTATGATTCGAAC 329
BSNT_01885___ 327 CTTTGAACATGAAAAGGTGGAGGAACTTGCCAAAGAAGCTGACATTCCGG 376
||||||||||||.|||||.|||||.||.||..||.|.||...||||||.|
BPUM_1048___a 330 CTTTGAACATGAGAAGGTCGAGGAGCTGGCACAATATGCGTCCATTCCTG 379
BSNT_01885___ 377 TGATCAATGGACTTACTGATAAATACCACCCATGCCAGGCGCTGGCGGAT 426
|.|||||||||||.|||||..|.|.|||||||||||||||.||.||.|||
BPUM_1048___a 380 TCATCAATGGACTGACTGACTACTCCCACCCATGCCAGGCACTTGCAGAT 429
BSNT_01885___ 427 CTCTTGACGATTAAGGAGATAAAAGGGAAGCTT-AAAGGCGTAAAAGTCT 475
.|.||||||||.||.|| |..|||.||||..|| |||||..|.||||||.
BPUM_1048___a 430 TTATTGACGATAAAAGA-AGCAAAAGGAACATTAAAAGGAATCAAAGTCG 478
BSNT_01885___ 476 CATACATCGGTGACGGAAATAACGTGGCGCACTCCTTGATGATCGGCTGC 525
|.||||||||||||||||||||.||.||.||||||||||||.|.|||||.
BPUM_1048___a 479 CTTACATCGGTGACGGAAATAATGTAGCTCACTCCTTGATGGTTGGCTGT 528
BSNT_01885___ 526 GCGAAAATGGGCTGTGATATCTCGATCGCTTCGCCAAAGGGATATGAAGT 575
||..|..|.|||||||||||..|..|.||.||.|||||.||.||||||..
BPUM_1048___a 529 GCACAGTTAGGCTGTGATATTGCAGTTGCATCACCAAAAGGCTATGAACC 578
BSNT_01885___ 576 GTTAGATGAAGCAGCTGAAGCGGCAAAAACA----TATGCACTTCAATCC 621
..|..|.||||.|.|.||..|.|| ||| |.||||...|||||.
BPUM_1048___a 579 ACTTCAAGAAGTAACAGACACAGC----ACATGAGTTTGCAAAACAATCA 624
BSNT_01885___ 622 GGCTC-----TTCTATCACGCTGACAGATGATCCGATTGAAGCTGTAAAA 666
|||.| | |||| .|.|||...||.||..|||..|||||..||
BPUM_1048___a 625 GGCGCAGAAGT--TATC---GTTACAACAGACCCTGTTGCTGCTGTTCAA 669
BSNT_01885___ 667 GACGCGGACGTAATTTATTCTGATGTGTTTACAAGCATGGGGCAGGAAGC 716
.|.||.||.||.||||||||.|||||.||||||||.||||||||||||||
BPUM_1048___a 670 AATGCAGATGTCATTTATTCCGATGTATTTACAAGTATGGGGCAGGAAGC 719
BSNT_01885___ 717 GGA---AGAGCAAGAACGTCTTGCTGTCTTTGCGCCTTATCAGGTGAATG 763
.|| |||| .||||||||||||..|||......|||||..|.||||
BPUM_1048___a 720 AGAAACAGAG---AAACGTCTTGCTGAATTTAAAGAATATCAAATCAATG 766
BSNT_01885___ 764 CGGCGCTTGTCAGCCATGCCAAGC--CTGACTATACATTTT--TACATTG 809
..|..||..|..|.||||| ||| ..||.||| ||||| |.|||||
BPUM_1048___a 767 ATGAACTAATGCGTCATGC--AGCAAAAGATTAT--ATTTTCCTTCATTG 812
BSNT_01885___ 810 TCTCCCTGCGCATCGTGAGGAAGAAGTGACTGCGGAGATTATTGACGGGC 859
||||||.||.||.||.|..|||||||||||.||.||.|||||||||||.|
BPUM_1048___a 813 TCTCCCAGCACACCGCGGAGAAGAAGTGACAGCAGACATTATTGACGGAC 862
BSNT_01885___ 860 CGAACTCTGCAGTGTTCCAGCAGGCGGAAAACCGTCTTCATGTGCAAAAA 909
||.||||...|||.||.||.|||||.|||||||||||.|||||.||||||
BPUM_1048___a 863 CGCACTCAAAAGTATTTCAACAGGCAGAAAACCGTCTGCATGTACAAAAA 912
BSNT_01885___ 910 GCACTGCTGAAGGCCATTTTATACAAAGGG---------GAATCATC-AA 949
||| |||..|||||.| .||.|||| ||
BPUM_1048___a 913 GCA---------------TTAATCAAAGAGCTCATGTATCAACCATCTAA 947
BSNT_01885___ 950 AAAACTGCTGA 960
|.||
BPUM_1048___a 948 ATAA------- 951
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