Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01883 and BPUM_1046

See Amino acid alignment / Visit BSNT_01883 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:24
# Commandline: needle
#    -asequence dna-align/BSNT_01883___carA.1.24716.seq
#    -bsequence dna-align/BPUM_1046___carA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01883___carA-BPUM_1046___carA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01883___carA-BPUM_1046___carA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01883___carA
# 2: BPUM_1046___carA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1127
# Identity:     746/1127 (66.2%)
# Similarity:   746/1127 (66.2%)
# Gaps:         130/1127 (11.5%)
# Score: 2376.0
# 
#
#=======================================

BSNT_01883___      1 ATGGAAGGTTATTTAGTGTTAGAAGATGGGACATCGTTCAGCGGCGAGCT     50
                     |||.|||||||||||...|||||||||||..|.||.||....||.||.||
BPUM_1046___c      1 ATGAAAGGTTATTTAAATTTAGAAGATGGAGCCTCTTTTGAAGGAGATCT     50

BSNT_01883___     51 GGACGGCCATGA-AAACTG----TACGGGAGAAGCTGTTTTTTTCACAGG     95
                          |.||.|| ||.|||    .||.||.||||..|||||.||.|||||
BPUM_1046___c     51 -----GACAGGAGAAGCTGGCAAGACAGGTGAAGTGGTTTTCTTTACAGG     95

BSNT_01883___     96 AATGACAGGCTACCAGGAAGTGCTGACAGATCCATCGTATAAGGGACAGA    145
                     .||||||||.|||||.||.||.||.|||||.||.||.||||||||.||.|
BPUM_1046___c     96 GATGACAGGTTACCAAGAGGTACTCACAGACCCTTCCTATAAGGGGCAAA    145

BSNT_01883___    146 TTATTGTATTTACCTACCCGCTGATTGGCAACTACGGCATAAATGAAAAG    195
                     |.|||||.||.||.||.|||||.||.||.||.||||||||.|||.|..|.
BPUM_1046___c    146 TCATTGTTTTCACATATCCGCTTATCGGAAATTACGGCATTAATCATGAA    195

BSNT_01883___    196 GACTTTGAAAGCAAGAAACCGCAAGTAAAAGCAGCGGTTGTCTATGAGGC    245
                     ||||||||.||.||.|||||.|||||.|||||.|..|||||.|||||.||
BPUM_1046___c    196 GACTTTGAGAGTAAAAAACCACAAGTGAAAGCTGTTGTTGTGTATGAAGC    245

BSNT_01883___    246 GTGTGATCACTTTTCT---CATTATGAAGCGGTATACAGCCTCAAGGAGT    292
                     ...||||||.||||||   |||..||.||||||   .|||.|.||.||.|
BPUM_1046___c    246 AGCTGATCATTTTTCTCACCATCTTGCAGCGGT---TAGCTTAAAAGATT    292

BSNT_01883___    293 ATTTACAGAAATGGAACATTCCGCTGTTAACCCATGTTGATACGAGGGCT    342
                     ||||.|||||.||||||||.|||||..|.||.|||...|||||..|.||.
BPUM_1046___c    293 ATTTGCAGAAGTGGAACATCCCGCTTCTGACACATACAGATACACGTGCA    342

BSNT_01883___    343 GTCGTGAAGAAAATCCGGGCAAACGGGACGATG-----GGTGCAACAGTC    387
                     ||||||.|.||.|||||||||||.|||||||||     .||| |.|||| 
BPUM_1046___c    343 GTCGTGCAAAACATCCGGGCAAATGGGACGATGAACGCTGTG-ATCAGT-    390

BSNT_01883___    388 ACAGCCTCTAAAGAAGGAGCTGAGATG-----------------GCCCTT    420
                                         |.|||||                 |||.|.
BPUM_1046___c    391 --------------------TTAGATGAAAACGAAACACCGTCTGCCATG    420

BSNT_01883___    421 CAACCAGAGAATGTGGCAGAGCAGGCTTCAGCCCAGGAAATCAGCACATT    470
                     .|||.|||.|||||||..|..||||...|||...|.||||||  .|||.|
BPUM_1046___c    421 AAACAAGACAATGTGGTTGCACAGGTGACAGAGGACGAAATC--TACACT    468

BSNT_01883___    471 C--GGCGACGGGAATAAACATATCGCTCTCATTGATTTTGGCTATAAAAA    518
                     |  |||..|||..|..|||||.|.||.||.|||||||||||||.||||||
BPUM_1046___c    469 CAAGGCAGCGGCGAGGAACATGTAGCGCTGATTGATTTTGGCTTTAAAAA    518

BSNT_01883___    519 GTCAATCGCATCATCACTTGTCAAAA----GAGGCTGCAAGGTTACTGTG    564
                     .|||||.|||...||.||||    ||    |.|||||.||.||.||.||.
BPUM_1046___c    519 ATCAATAGCAGATTCGCTTG----AAGCGCGCGGCTGTAAAGTAACCGTT    564

BSNT_01883___    565 GTGCCATAC---CAGC---AAATGGAGGCCGTATACAACATCAAACCCGA    608
                     .|.||.|||   ||||   |||.||.|...|.||      |.||.||.||
BPUM_1046___c    565 ATTCCGTACAAACAGCTGGAAAAGGTGTTTGAAT------TGAAGCCAGA    608

BSNT_01883___    609 TGGCATTGTGCTATCGAACGGACCTGGAGATCCGAAAGCAATCCAGCCAT    658
                     ||...|..|||||||.||.||.|||||||||||.|||.||||..||||||
BPUM_1046___c    609 TGCGGTACTGCTATCAAATGGCCCTGGAGATCCCAAAACAATGAAGCCAT    658

BSNT_01883___    659 ATTTAGGAAAGA-TCA--AAAGCATCATCAGCCGCTTT-CCGACTCTCGG    704
                     |||||..||..| |||  |.|.|||.||.|    |||| |||||.||.||
BPUM_1046___c    659 ATTTAAAAACCATTCATGAGATCATGATGA----CTTTCCCGACACTTGG    704

BSNT_01883___    705 CATTTGTCTCGGACATCAGCTGATCGCGCTCGCGTTCGGAGGGAATACTT    754
                     .||.||..|.||.|||||..|.|||||.||.||..|.||.|||.||||.|
BPUM_1046___c    705 GATCTGCTTAGGTCATCAATTAATCGCTCTTGCACTTGGCGGGGATACGT    754

BSNT_01883___    755 TTAAGCTGCCATTCGGACACAGGGGAGCTAATCATCCGGT-CATCGACCG    803
                     .|||.||.|||||.||.|||.|.||.||.|||||.||.|| ||       
BPUM_1046___c    755 ATAAACTACCATTTGGCCACCGCGGGGCGAATCACCCTGTACA-------    797

BSNT_01883___    804 TGAGA--------CGAAACGGGTCTTTATGACAAGCCAAAACCACAGCTA    845
                       |||        |.|||||.||.||.|||||.||.||.||.||||||||
BPUM_1046___c    798 --AGATACAGAATCCAAACGTGTTTTCATGACGAGTCAGAATCACAGCTA    845

BSNT_01883___    846 TGTGGTTGATGAACAGTCGATTAATG---AAGAAGAGCTCACGATCAGAT    892
                     |||.||..|||||.|....||.||||   ||||||.|  .||| |.|.||
BPUM_1046___c    846 TGTAGTGAATGAAAAAAGCATGAATGACAAAGAAGTG--GACG-TGAAAT    892

BSNT_01883___    893 TTCATCATGTCAATGATACGTCAGTTGAAGGGCTTGCCCATAAA---AAA    939
                     |.|.|||||||||||||...||.||.||||||.|....||||||   ||.
BPUM_1046___c    893 TCCTTCATGTCAATGATGGATCTGTCGAAGGGTTCATTCATAAAGAGAAG    942

BSNT_01883___    940 CTGCCA----GTCATGAGTGTGCAATTCCACCCGGAGGCCCATCCCGGAC    985
                     ||  ||    ||||     ||.|||||.|||||.||.||.||.||.||.|
BPUM_1046___c    943 CT--CATTATGTCA-----GTTCAATTTCACCCAGAAGCACACCCAGGGC    985

BSNT_01883___    986 CGGCGGAAAGCGAATGGGTTTTTGATGATTATCTAAAGAATGTGATACCA   1035
                     |.||.|||||.||||||||.||.|||||||.|.|..||||.||||.||.|
BPUM_1046___c    986 CTGCTGAAAGTGAATGGGTATTCGATGATTTTATTGAGAAAGTGAAACAA   1035

BSNT_01883___   1036 GCAAGGAGAGAAATCGCGCATGCCTAA   1062
                     ||||||||||||.||||.|||||||||
BPUM_1046___c   1036 GCAAGGAGAGAAGTCGCACATGCCTAA   1062


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