Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01880 and BPUM_1043
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:23
# Commandline: needle
# -asequence dna-align/BSNT_01880___argJ.1.24716.seq
# -bsequence dna-align/BPUM_1043___argJ.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01880___argJ-BPUM_1043___argJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01880___argJ-BPUM_1043___argJ.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01880___argJ
# 2: BPUM_1043___argJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1285
# Identity: 881/1285 (68.6%)
# Similarity: 881/1285 (68.6%)
# Gaps: 128/1285 (10.0%)
# Score: 2933.0
#
#
#=======================================
BSNT_01880___ 1 ATGATTCAGTTAAGTGAAGATCAA--ATTGTAAAAGTAACAGGTGATGTA 48
||||||.|.||.|.||||.| || |||||.|||.|||..|||||.|||
BPUM_1043___a 1 ATGATTGAATTGAATGAAAA--AAGCATTGTTAAAATAAACGGTGACGTA 48
BSNT_01880___ 49 TCCTCGCCAAAAGGGTTTCAGGCAAAGGGTGTGCATTGCGGGCTGCGCTA 98
|||||.||||||||.|||.|.||||||||..|.|||...||..|.||.||
BPUM_1043___a 49 TCCTCACCAAAAGGCTTTGAAGCAAAGGGGATTCATATTGGATTACGGTA 98
BSNT_01880___ 99 CTCGAAAAAAGACCTCGGCGTCATTATCAGCGAGACACTGGCTGTGAGCG 148
.||.|||||||||||.||..|.||..||||.||....|.|||.|.|||.|
BPUM_1043___a 99 TTCAAAAAAAGACCTTGGACTGATCGTCAGTGAAGTGCCGGCAGCGAGTG 148
BSNT_01880___ 149 CAGCAGTTTATACCCAAAGCCACTTTCAGGCTGCTCCGATCAAAGTGACA 198
|.||.|||||.||.||||||||.|||||.|||||.||..||.||||.||.
BPUM_1043___a 149 CGGCGGTTTACACACAAAGCCATTTTCAAGCTGCGCCTCTCCAAGTCACT 198
BSNT_01880___ 199 CAAGACAGCTTAAAGCACGGACCGAC------ACTGAAAGCCGTTATCGT 242
||..|.|||||||| |..||| |.|.||||..||.||.||
BPUM_1043___a 199 CAGAAAAGCTTAAA------AAAGACAGGGCAATTAAAAGGTGTCATTGT 242
BSNT_01880___ 243 CAACAGTGCCATTGCCAATGCCTGCACGGGAGAACAAGGCCTAAAGGACG 292
|||.|||||.||.||||||||.||.||.||.||.|||||..|.||.||||
BPUM_1043___a 243 CAATAGTGCTATCGCCAATGCATGTACCGGTGAGCAAGGTTTGAAAGACG 292
BSNT_01880___ 293 CATACACAATGCGGGAGAGCTTTGCTTCACAGCTTG-GCA---------- 331
|||||..|||||.|| ||||.|| |||
BPUM_1043___a 293 CATACGAAATGCAGG--------------CAGCCTGTGCAGATATGTTAG 328
BSNT_01880___ 332 ---TTGAGCCGGAGCTT--GTCGCTGTTTCATCAACGGGTGTCATCGGCG 376
|.||.||.|| || .|.||||||||.||.||.|||||.||.||.|
BPUM_1043___a 329 GGGTAGAACCTGA--TTACATTGCTGTTTCTTCTACTGGTGTTATTGGAG 376
BSNT_01880___ 377 AGCATTTAGACATGGAAAAAATCCACGCGGGGATCGAGCTGCTGAAAGGA 426
||..|.|.||.|||||.||||||.|....||.|||...|.||||||||.|
BPUM_1043___a 377 AGTGTCTGGATATGGATAAAATCAAAAAAGGCATCACTCAGCTGAAAGAA 426
BSNT_01880___ 427 ACACCTGCGGGATCAGGCGATTTTGAGGAAGCAATTTTAACAACTGATAC 476
.||...||.|||...||..|||||||.||.||.||.|||||.||.||.||
BPUM_1043___a 427 GCAAAAGCAGGAAATGGTCATTTTGAAGAGGCCATCTTAACGACAGACAC 476
BSNT_01880___ 477 GGTGATCAAGCAGACGTGCTATGAA--------CTGGCAATCGGCGGCAA 518
.||.||.||..|.|| || |||.|.||...||||||
BPUM_1043___a 477 AGTCATTAAAAACAC--------AACATACACCCTGACGATAAACGGCAA 518
BSNT_01880___ 519 A-ACAGTCACGATCGGCGGAGCGGCCAAAGGCTCAGGGATGATACACCCG 567
| |.|.||.| ||....||.||.||.||.|||||.||.|||||.||.|||
BPUM_1043___a 519 AGAGATTCTC-ATTTCAGGTGCAGCGAAGGGCTCTGGCATGATTCATCCG 567
BSNT_01880___ 568 AACATGGCCACGATGCTGGGATTTGTGACAACTGACGCGGCAA---TCGA 614
||||||||.||.|||||.||.||.||||||||.|| .|||| ||||
BPUM_1043___a 568 AACATGGCAACAATGCTTGGTTTCGTGACAACGGA---TGCAAATGTCGA 614
BSNT_01880___ 615 AGAAAAAGCGCTGCAAAAGGCGCTTCGAGAAATCACTGACGTTTCATTTA 664
|.||.||||.||.|||||.||.||.||.||.||.|||||.||..|.||||
BPUM_1043___a 615 ACAAGAAGCTCTTCAAAACGCACTGCGTGATATTACTGATGTGACCTTTA 664
BSNT_01880___ 665 ACCAAATCACAGTTGACGGAGAAACATCCACGAACGATATGGTATTAGTT 714
|.|||||.||.||.||||||||||||||.||.||||||||||||.|.||.
BPUM_1043___a 665 ATCAAATTACTGTCGACGGAGAAACATCGACAAACGATATGGTACTCGTG 714
BSNT_01880___ 715 ATGGCGAATGG-CTGCGCCGAAAACG-AGTGCCTGACAGAAGACCATCCA 762
|||||.||||| .|| ||.|||||.| ||| .||.|..|||||.||||||
BPUM_1043___a 715 ATGGCAAATGGTATG-GCAGAAAATGAAGT-TCTCAATGAAGAGCATCCA 762
BSNT_01880___ 763 GACTGGCCGGTCTTTAAAAAA-----ACACTCTTGCTCACTTGTGAGGAT 807
||.||||||.|.||.|||.|| |.| |||..|||||||||||
BPUM_1043___a 763 GAATGGCCGTTGTTCAAAGAAGGGTTAAA-----GCTAGCTTGTGAGGAT 807
BSNT_01880___ 808 CTGGCTAAAGAGATTGCCAGAGACGGAGAAGGCGCGACAAAACTAATTGA 857
||.||||||||||||||.||||||||||||||.||.||.|||.|||||||
BPUM_1043___a 808 CTTGCTAAAGAGATTGCAAGAGACGGAGAAGGTGCAACGAAATTAATTGA 857
BSNT_01880___ 858 AGCACAAGTACAGGGAGCGAAAAACAATCTTGATGCAAACGTCATTGCCA 907
|||.|||||....||.||.|||||..||.|.||.||...|.||||.||.|
BPUM_1043___a 858 AGCGCAAGTTGCTGGTGCTAAAAATCATTTAGAAGCTGGCATCATAGCGA 907
BSNT_01880___ 908 AAAAGATTGTCGGCTCAAATCTCGTGAAAACGGCAGTATACGGAACAGAT 957
|.||.||||||||.||||.|||.||||||||.||.||||||||.||.||.
BPUM_1043___a 908 AGAAAATTGTCGGTTCAAGTCTAGTGAAAACAGCCGTATACGGTACTGAC 957
BSNT_01880___ 958 GCCAACTGGGGGCGGATCATCGGAGCCATTGGACACTCCGCAGC-----T 1002
|||||||||||.||||||||.|||||.|||||.||...|||||| |
BPUM_1043___a 958 GCCAACTGGGGACGGATCATTGGAGCGATTGGGCATAGCGCAGCATCCGT 1007
BSNT_01880___ 1003 CAAGTGACGGCAGAAGAAGTAGAGGTTTATCTTGGCGGCCAATGCCTGTT 1052
|| .||.|| ||||.|||||.||.|||.|.|||||.|||||.|||||
BPUM_1043___a 1008 CA---CACCGC--AAGAGGTAGAAGTGTATTTAGGCGGGCAATGTCTGTT 1052
BSNT_01880___ 1053 TAAGAATAACGAGCCTCAGCCATTCTCTGAATCTCTCGCCAAGGAA---- 1098
|||..||||.||.||.|||||.|||||.||| .|||||
BPUM_1043___a 1053 TAAACATAATGAACCACAGCCTTTCTCAGAA---------GAGGAAGCAA 1093
BSNT_01880___ 1099 -----TACCTTGAAGGAGATGAAATCACCATTGTCA-TCAAGATGGATGA 1142
||.||.|||...|||||.|||||.|||.|.| |||| ||||
BPUM_1043___a 1094 AAGCGTATCTAGAACAGGATGAGATCACAATTTTGATTCAA-----ATGA 1138
BSNT_01880___ 1143 AGGGGACGGAAACGG-GA--GAGCG---TGGGGCTGTGACCTGACCTATG 1186
| .||.|||||.|| || .|||| ||||||||||||||.||.||||
BPUM_1043___a 1139 A--TGAGGGAAATGGTGAAGCAGCGGCATGGGGCTGTGACCTTACTTATG 1186
BSNT_01880___ 1187 ACTATATCAAAATTAACGCGAGCTATCGCACGTAA 1221
|.|||.|.|||||||||||||||||||||||.|.|
BPUM_1043___a 1187 ATTATGTGAAAATTAACGCGAGCTATCGCACATGA 1221
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