Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01876 and BPUM_1040
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:23
# Commandline: needle
# -asequence dna-align/BSNT_01876___yitY.1.24716.seq
# -bsequence dna-align/BPUM_1040___yitY.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01876___yitY-BPUM_1040___yitY.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01876___yitY-BPUM_1040___yitY.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01876___yitY
# 2: BPUM_1040___yitY
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1557
# Identity: 988/1557 (63.5%)
# Similarity: 988/1557 (63.5%)
# Gaps: 249/1557 (16.0%)
# Score: 2947.5
#
#
#=======================================
BSNT_01876___ 1 ------------------TTGCTTGCATTCGCGCTTTGTACTGG----CG 28
|.|.||| ||| ||.||.||| |.
BPUM_1040___y 1 ATGAAACGAAAATGGTTATGGATTG--TTC-----TTTTAATGGGATACA 43
BSNT_01876___ 29 CGTATGCGGCCCTGTTTGCGT--------ACTCTGTGAACTCAGAGCAAA 70
| |||.||..|.|||||.| |.|| |||| .||||
BPUM_1040___y 44 C---TGCTGCATTTTTTGCATCAATCACCATTC-GTGA----GGAGC--- 82
BSNT_01876___ 71 AAACAGACACAAGCGA-------GA-----TGACGGATGTCAGCGGCCTG 108
||..|.|||.||||.| || |.||.||||||||....||.
BPUM_1040___y 83 AAGTACACAAAAGCAAAGATCTTGAAGCCTTCACAGATGTCAGTCATCTC 132
BSNT_01876___ 109 ATGCCTGTAAAAATAAAGCAGACAGTGAAAGGGC-----AGGAAGAGGAA 153
||||||||.|||||||| |||.|.| |||||.||.|
BPUM_1040___y 133 ATGCCTGTCAAAATAAA----------AAAAGTCGTTCAAGGAAAAGAA- 171
BSNT_01876___ 154 ACGCTCATTGACACAGTCAAAGAGGCA--AATCGAA---AAAACATAAAA 198
||.|||||..|.|||||.|.| ||..||| |||.||.||||
BPUM_1040___y 172 ------ATAGACACGTTAAAAGAAGTATTAAAAGAAGCGAAAGCAAAAAA 215
BSNT_01876___ 199 -------ATTTCAATCGCCGGGGCCCAGCACTCCATGGGCGGCCATACAT 241
||.|||||.||.|||...|||||...||||||.|||||.||.|
BPUM_1040___y 216 GTTGCCGATATCAATTGCAGGGAAACAGCATAGCATGGGTGGCCACACGT 265
BSNT_01876___ 242 ATTATGAGGACGGCATCGTTCTCGACATGACGGGCTACAA-----CAAAA 286
|||||||..|.||||||||.||.||.||||||| || |.|.|
BPUM_1040___y 266 ATTATGAAAATGGCATCGTGCTTGATATGACGG-----AATTTCGCCAGA 310
BSNT_01876___ 287 TCCTGTCACTCGATCAAGAGAAGAAAACCATCAGGGTGCAAAGCGGTGCA 336
|..|..||.|.|||.||.|.||||||||.||..||||.|||||.||||..
BPUM_1040___y 311 TTTTAGCATTTGATGAAAAAAAGAAAACGATTCGGGTCCAAAGTGGTGTG 360
BSNT_01876___ 337 ACGTGGAATGATATCCAGAAATACGTGAATCCATACGGACTCGCGGTAAA 386
||.|||.||||.||.||.|.|||.|||||.|||||.||.||.||.||.||
BPUM_1040___y 361 ACATGGGATGACATACAAACATATGTGAACCCATATGGTCTTGCTGTGAA 410
BSNT_01876___ 387 AGTCATGCAGTCACAAAACATTTTTACAATCGGCGGATCTCTCAGCGCAA 436
.||.|||||.||.|||||.||.||||||||.|||||||||.|.||.||||
BPUM_1040___y 411 GGTGATGCAATCGCAAAATATCTTTACAATTGGCGGATCTTTAAGTGCAA 460
BSNT_01876___ 437 ATGCACACGGACGTGATATTCGCTACGGCTCGCTGATTGATACAGTCAAA 486
|.|||||.||||||||.|||||.|||||.||.||.|||||.|||||....
BPUM_1040___y 461 ACGCACATGGACGTGACATTCGTTACGGGTCACTCATTGACACAGTTCGT 510
BSNT_01876___ 487 TCATTTCGGCTTTTAAAAGCTGACGG-GACGATTATCACTGTCACTCCAA 535
||.|||.||||.||||||||.||.|| || ||||.||||.||.|..||..
BPUM_1040___y 511 TCCTTTAGGCTGTTAAAAGCAGATGGCGA-GATTGTCACAGTGAAGCCGG 559
BSNT_01876___ 536 AAGATGATTTGTTTACGGCGGTCATCGGAGGGTACGGCCTTTTTGGCGTG 585
..|||||||||||.||.||||||||.|||||.|||||..|.||.||.||.
BPUM_1040___y 560 GCGATGATTTGTTCACTGCGGTCATTGGAGGATACGGTTTATTCGGTGTC 609
BSNT_01876___ 586 ATTCTTGATGTAACGCTTGAGC------TGACAGATGATGAGCTGTATGT 629
|||.|.|||| |||||| |.|||.|.|||||.||.|||..
BPUM_1040___y 610 ATTTTAGATG------TTGAGCTTTCTTTAACAAAAGATGAACTATATAA 653
BSNT_01876___ 630 CATGAAGACAGAAAAAA------TGAATTAC----AGCACATACTCAGAC 669
.|||.|||| || |..||||| || ||..|.||.
BPUM_1040___y 654 AATGGAGAC------AACCTCTCTAGATTACGATGAG----TATACGGAT 693
BSNT_01876___ 670 TATTTTTCAAAGCATGTAAAAGGAAATCCAGATGTCCGAATGCATCTGGC 719
||||||..|||||||||.|||..||||..|||.||.||.||||||||.||
BPUM_1040___y 694 TATTTTCAAAAGCATGTGAAACAAAATAAAGAAGTACGCATGCATCTTGC 743
BSNT_01876___ 720 GCGAATTTCAACAGCGAAAA--AAGGATTTCTGAAAGACATGTATGTCAC 767
..||||.||||||||||||| || .|||.|||||||.||||||||.||
BPUM_1040___y 744 CAGAATCTCAACAGCGAAAACCAA--CTTTTTGAAAGAGATGTATGTAAC 791
BSNT_01876___ 768 GAATTACGTATTGGCTGA--TCATCAGGATCAAC-------TGCCATCAT 808
|||| ||||..||.| ||| |||| || .|||||
BPUM_1040___y 792 GAAT----TATTCCCTCAATTCA-------CAACAAGAGATTG-AATCAT 829
BSNT_01876___ 809 A-CAGCGATCTCAAAGAAGATGA----GT-ATACGGGAGCCA--CAAAGT 850
| || .||.||.|||||.|||.| || || |||| ||||.|
BPUM_1040___y 830 ATCA-AGAGCTGAAAGAGGATCAACTCGTCAT------GCCACTCAAATT 872
BSNT_01876___ 851 T-TGCACTCGGTTTGTCAAGACGGTATGA-ATGGGGCAGGAATTGGCTGT 898
| || ||.|||.|.||||||.|.|.||| ||||||.|.| ||..|||.|
BPUM_1040___y 873 TATG--CTTGGTCTTTCAAGAAGATTTGATATGGGGAAAG-ATCTGCTCT 919
BSNT_01876___ 899 GGGA----CACACAGCAATCCTATTTCCTGAGCCAAAACG-GCA-CAGAG 942
||.| || |.||.| .|||||||..||.|||||.| .|| |.||
BPUM_1040___y 920 GGAATTTGCA-AAAGAA---GTATTTCCAAAGTCAAAATGATCAGCTGA- 964
BSNT_01876___ 943 ATTTCAC--GCAATAACGTCATGCGGTCCGAATCAAAGTTTCTTGAGTAT 990
|||| |.||.||.||.|||||.||.||.||....|||.|.||.|||
BPUM_1040___y 965 ---TCACTAGAAACAATGTGATGCGCTCAGATTCTGCTTTTTTAGAATAT 1011
BSNT_01876___ 991 GAAAACAATGA--CA-ACACAGATGTTTTGCAAGAATACTTTGTGCCCGT 1037
||| ||||| || |.||||||||..|.||.|||||.||.||.||.||
BPUM_1040___y 1012 GAA---AATGAGTCAGATACAGATGTACTTCAGGAATATTTCGTCCCAGT 1058
BSNT_01876___ 1038 GAAGGAGTATGGGTCCTATATTGATGACCTGAG---------ACAAACGC 1078
|.|....|.|.|..|.|||||.||||||.|||| ||||
BPUM_1040___y 1059 GGACCGCTTTCGTGCGTATATCGATGACATGAGAAGTTATTTACAA---- 1104
BSNT_01876___ 1079 TGTCGGACGAAGATCTGAACCTGCTGAACATTACGATCCGCTACGTGCAG 1128
.|.|||||..|||||.|..||||.||.||.||.||||||||.||.
BPUM_1040___y 1105 -----CAGGAAGAATTGAACTTAATGAATATCACAATACGCTACGTACAA 1149
BSNT_01876___ 1129 AAAAATGAAAAGGCCGACCTTTCCTATGCGAAGGACGATATGTTTTCGCT 1178
|||||||||||.||.||.||.||.||||||||.||.|||||||||.|.||
BPUM_1040___y 1150 AAAAATGAAAAAGCGGATCTCTCATATGCGAAAGAAGATATGTTTGCCCT 1199
BSNT_01876___ 1179 CGTGCTATTAATAAACGAGGGCTTTTCA-AAAGAAGACCAGGCAGATACT 1227
.||.||.|||.|.||..|.|| ||||.| ||||||||...||||||..|.
BPUM_1040___y 1200 TGTTCTTTTAGTGAATTATGG-TTTTGAGAAAGAAGAGACGGCAGAAGCA 1248
BSNT_01876___ 1228 GCCCGAATCATCAGGCACATGACAGACGTTGCCATCAAGC-ACGGC---- 1272
|..||.||||||.||||.|||||||| .||||.|| .||||
BPUM_1040___y 1249 GAGCGGATCATCCGGCAAATGACAGA------TATCACGCTTCGGCACCA 1292
BSNT_01876___ 1273 -GGCAGCTATTATCTGCCTTATATGACCTACCAGACAAAAGCGCAAATGA 1321
||.||||||||..|.||.||.|||.|.||.||.||.||.||.|||||||
BPUM_1040___y 1293 TGGAAGCTATTACTTACCGTACATGCCTTATCAAACGAAGGCACAAATGA 1342
BSNT_01876___ 1322 GACAGGCATATCCGAAAAGTGAAGCGTTTTTTC---AGAAAAAACGAACC 1368
..|.|||.|||||.||||..||.|..|||||.| |||||||.|.|.|
BPUM_1040___y 1343 AGCGGGCCTATCCTAAAACCGATGTATTTTTCCAAAAGAAAAAGCAAGC- 1391
BSNT_01876___ 1369 TATGACCCGGATGAGCGCTTTATGAATTACTTTTATCAGAGGT---ATAA 1415
.||.||.||.|...|.|||||.||||||||||||.|.|||| |||.
BPUM_1040___y 1392 --AGATCCAGAAGGTAGGTTTATCAATTACTTTTATGAAAGGTACAATAC 1439
BSNT_01876___ 1416 ATAA--- 1419
|.||
BPUM_1040___y 1440 ACAATGA 1446
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