Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01869 and BPUM_1037

See Amino acid alignment / Visit BSNT_01869 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:23
# Commandline: needle
#    -asequence dna-align/BSNT_01869___yitU.1.24716.seq
#    -bsequence dna-align/BPUM_1037___yitU.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01869___yitU-BPUM_1037___yitU.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01869___yitU-BPUM_1037___yitU.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01869___yitU
# 2: BPUM_1037___yitU
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 835
# Identity:     609/835 (72.9%)
# Similarity:   609/835 (72.9%)
# Gaps:          44/835 ( 5.3%)
# Score: 2076.5
# 
#
#=======================================

BSNT_01869___      1 ATGGAGACAAAACCCTATTTAATCGCATTAGATTTAGATGGAACATTATT     50
                     ||||||||.|||||.||..||||||||.|.||..|.|||||.||.|||||
BPUM_1037___y      1 ATGGAGACTAAACCTTACCTAATCGCACTTGACCTGGATGGCACGTTATT     50

BSNT_01869___     51 AAAGGATGATAAAACCATATCTGAAAACACCCTTCAGACG--ATACAGCG     98
                     |||.||||||||||||||.|||..|.||||.|||  ||||  ||.||   
BPUM_1037___y     51 AAAAGATGATAAAACCATCTCTACACACACACTT--GACGTCATTCA---     95

BSNT_01869___     99 CCTAAAAGATGA-------CGGGCATTATGTCTGCATCTCAACGGGGCGT    141
                        ||||| |||       |||||||.||||||||||.|||||.||.||.
BPUM_1037___y     96 ---AAAAG-TGAAAGACAGCGGGCATCATGTCTGCATTTCAACCGGCCGG    141

BSNT_01869___    142 CCGTACCGTTCAAGTTC-CATGTACTACCAGCAGATGGAAC-TGA--CAA    187
                     ||.|..|||||.||.|| |.| ||.||.|||||..|..|.| |||  || 
BPUM_1037___y    142 CCATTTCGTTCCAGCTCTCCT-TATTATCAGCAATTACAGCTTGATTCA-    189

BSNT_01869___    188 CGCCGATTGTCAATTTTAACGGAGCATTTGTCCATCATCCGCAGGACGAC    237
                       ||.|||||.||||||||.|||||.||||||||||||||.|..||.||.
BPUM_1037___y    190 --CCCATTGTGAATTTTAATGGAGCGTTTGTCCATCATCCTCTTGATGAA    237

BSNT_01869___    238 AGCTGGGGACGGTATCATACGTCACTCCCGCTTGATGTTGTCAAACAGCT    287
                     |..|||||..|.|.||||||||||||....|||.|.||.||.||||||||
BPUM_1037___y    238 AAATGGGGCAGATTTCATACGTCACTTGATCTTCAAGTCGTTAAACAGCT    287

BSNT_01869___    288 CGTGGATATCAGCG-AGAGCTACAACGTACATAATGTGCTTGCTGAAGTG    336
                     .||.||.||.||.| |||| ||.||.||.||.||.|||||.|||||||||
BPUM_1037___y    288 TGTAGACATTAGTGAAGAG-TATAAAGTGCACAACGTGCTAGCTGAAGTG    336

BSNT_01869___    337 ATTGATGACGTATACTTTCATTACCATGATGAGCACCTGATTGATGCCTT    386
                     .|.||.||..|.||.||.|||||.|||||||||.|.||.||||||...||
BPUM_1037___y    337 TTAGACGATTTGTATTTCCATTATCATGATGAGAAGCTCATTGATATATT    386

BSNT_01869___    387 TAACATGAA--CACAACAAATGTAACGGTCGGAGACTTGCGGGAAAATCT    434
                     |||.|||||  | |||.||| ||.||.||.||||||.|.|||||.||.||
BPUM_1037___y    387 TAATATGAATGC-CAATAAA-GTCACTGTTGGAGACCTTCGGGACAACCT    434

BSNT_01869___    435 TGGTGAAGATGTGACGTCTGTACTCATACATGCAAAAGAAGAGGATGTGC    484
                     |||.||..||||||||...||..|.||.||.||.||||||||||||||  
BPUM_1037___y    435 TGGAGAGAATGTGACGAGCGTGTTGATTCACGCCAAAGAAGAGGATGT--    482

BSNT_01869___    485 CG--GCAATACGCTCATATTTATCGGATGTGCATGCCGAGGTAATCGACC    532
                     ||  ||.||.||....||||||||.|||||.|||||.||.||.||.||.|
BPUM_1037___y    483 CGGAGCTATTCGAAGTTATTTATCAGATGTTCATGCAGAAGTGATTGATC    532

BSNT_01869___    533 ATAGAAGATGGGCCGCACCGTGGCATGTCATTGAAATTATCAAAAGCGGC    582
                     ||||..|||||||.||.||||||||.||.|||||.||.||.||||..||.
BPUM_1037___y    533 ATAGGCGATGGGCTGCTCCGTGGCACGTGATTGAGATCATTAAAACAGGT    582

BSNT_01869___    583 ATGAATAAAGCGGTCGGCCTGCAGAAAATCAGCGATTATTACGGCCTGCC    632
                     |||||.||.||.||.||.|||||.||.|||||.||||||||||||.|.||
BPUM_1037___y    583 ATGAACAAGGCCGTTGGGCTGCAAAAGATCAGTGATTATTACGGCGTTCC    632

BSNT_01869___    633 GAGGGAGCGGATCATTGCTTTCGGGGATGAGGATAACGATTTGGAAATGC    682
                     ...|||||||||..|.||.|||||.|||||.||.||.|||||.|||||||
BPUM_1037___y    633 ACAGGAGCGGATTGTGGCATTCGGAGATGAAGACAATGATTTAGAAATGC    682

BSNT_01869___    683 TTGAATTTGCAGGCTGCGGCGTTGCAATGGGAAATGGAATTGACGCGGTC    732
                     ||||||||||.||.|||||.||.||||||||.||.|||||.||.||.||.
BPUM_1037___y    683 TTGAATTTGCCGGATGCGGAGTCGCAATGGGCAACGGAATCGATGCCGTT    732

BSNT_01869___    733 AAGC-AGATTGCCAACCGAA--CAACGGCTACAAATGAAGAGGACGGCGT    779
                     ||.| .|.||  |||..|||  | ||.|.||||||.|||.|.||.||..|
BPUM_1037___y    733 AAACGTGTTT--CAAATGAAGTC-ACTGATACAAACGAACAAGATGGGAT    779

BSNT_01869___    780 TGCAAGGTTTTTGAAAGAA-TATTTCTCACTTTAA    813
                     |||||.||||.| ||.||| ||.||.||.||||||
BPUM_1037___y    780 TGCAAAGTTTCT-AACGAATTACTTTTCGCTTTAA    813


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_01869 and BPUM_1037

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
