Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01867 and BPUM_1034

See Amino acid alignment / Visit BSNT_01867 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:23
# Commandline: needle
#    -asequence dna-align/BSNT_01867.1.24716.seq
#    -bsequence dna-align/BPUM_1034___ipi.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01867-BPUM_1034___ipi.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01867-BPUM_1034___ipi.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01867
# 2: BPUM_1034___ipi
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 499
# Identity:     240/499 (48.1%)
# Similarity:   240/499 (48.1%)
# Gaps:         182/499 (36.5%)
# Score: 611.5
# 
#
#=======================================

BSNT_01867         1 GTGAAACGGCTGCTTGTGATGCTCCTCCCCGTGCTGCTTTTGATAGGCTG     50
                                                                       
BPUM_1034___i      0 --------------------------------------------------      0

BSNT_01867        51 CGGGAAAGATGAGCAGACAGAACCCGATAAGGAGGTATCAGGCGGAAT-G     99
                                                                   || |
BPUM_1034___i      1 ----------------------------------------------ATGG      4

BSNT_01867       100 GAGAATCAAGA-GGTTGTTTTATCTATTGACGCAATTCAGGAGCCTGAAC    148
                     |||||  ||.| ||||||..|..|..|.|||.|..|.|||          
BPUM_1034___i      5 GAGAA--AAAACGGTTGTGCTCACAGTAGACCCCGTCCAG----------     42

BSNT_01867       149 AAA-----------TCAAGTTTAACATGTCGCTGAA----GAACCAAAGT    183
                     |||           |||| |||||||||||.|||||    |||.||    
BPUM_1034___i     43 AAAGGTTCTTCGGTTCAA-TTTAACATGTCACTGAAAAATGAATCA----     87

BSNT_01867       184 GAACGTGCTATTGAGTTTCAATTCAGCACAGGGCAAAAATTTGAACT-TG    232
                     ||.||.|.||||||.|||...||.|.||||.|.||.|||||.||.|| .|
BPUM_1034___i     88 GATCGAGATATTGAATTTACCTTTAACACAAGCCAGAAATTCGAGCTCAG    137

BSNT_01867       233 TCGTGTATGATTCTGAGCAC---AAAGAAAGATACCGTTATTCGAAAGAC    279
                     | ||||||||   .||..||   ||.|||..||||||||||||.||||||
BPUM_1034___i    138 T-GTGTATGA---CGAAAACGGAAATGAACAATACCGTTATTCAAAAGAC    183

BSNT_01867       280 AAAATGTTTACGCAGGCTTTTCAA------AACCTGACGCTTGAATCTGG    323
                     ...|||||.||.|||||..|.|||      ..|||||    .|||  .||
BPUM_1034___i    184 CGTATGTTCACACAGGCCATCCAATCATTTGTCCTGA----AGAA--AGG    227

BSNT_01867       324 AGAAACATATGATTTCTC-TGATGTGTGG---AAGGAAGTCCCTGAGCCC    369
                     .|||.|.|||||||| || .|||...|||   ||.|..|||   .||||.
BPUM_1034___i    228 CGAAGCCTATGATTT-TCAAGATACATGGTCAAATGGTGTC---AAGCCG    273

BSNT_01867       370 GGAACCTATGA---GGTAAAGGTGACATTTAAGGGCAGGGCGGAAAATCT    416
                     |||||.|||||   |||   .||.||||||||.||.|..||.|||...||
BPUM_1034___i    274 GGAACGTATGAAGCGGT---TGTCACATTTAAAGGAAAAGCAGAAGGGCT    320

BSNT_01867       417 CAAGCAGGTTCAGGCTGTTCAG---------CAGTTTGAAGTCAAATAA    456
                     .||||| ..|||       |||         || ||..||||.||||||
BPUM_1034___i    321 GAAGCA-AATCA-------CAGAAAAGAAAACA-TTCCAAGTGAAATAA    360


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