Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01867 and BPUM_1034
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:23
# Commandline: needle
# -asequence dna-align/BSNT_01867.1.24716.seq
# -bsequence dna-align/BPUM_1034___ipi.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01867-BPUM_1034___ipi.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01867-BPUM_1034___ipi.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01867
# 2: BPUM_1034___ipi
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 499
# Identity: 240/499 (48.1%)
# Similarity: 240/499 (48.1%)
# Gaps: 182/499 (36.5%)
# Score: 611.5
#
#
#=======================================
BSNT_01867 1 GTGAAACGGCTGCTTGTGATGCTCCTCCCCGTGCTGCTTTTGATAGGCTG 50
BPUM_1034___i 0 -------------------------------------------------- 0
BSNT_01867 51 CGGGAAAGATGAGCAGACAGAACCCGATAAGGAGGTATCAGGCGGAAT-G 99
|| |
BPUM_1034___i 1 ----------------------------------------------ATGG 4
BSNT_01867 100 GAGAATCAAGA-GGTTGTTTTATCTATTGACGCAATTCAGGAGCCTGAAC 148
||||| ||.| ||||||..|..|..|.|||.|..|.|||
BPUM_1034___i 5 GAGAA--AAAACGGTTGTGCTCACAGTAGACCCCGTCCAG---------- 42
BSNT_01867 149 AAA-----------TCAAGTTTAACATGTCGCTGAA----GAACCAAAGT 183
||| |||| |||||||||||.||||| |||.||
BPUM_1034___i 43 AAAGGTTCTTCGGTTCAA-TTTAACATGTCACTGAAAAATGAATCA---- 87
BSNT_01867 184 GAACGTGCTATTGAGTTTCAATTCAGCACAGGGCAAAAATTTGAACT-TG 232
||.||.|.||||||.|||...||.|.||||.|.||.|||||.||.|| .|
BPUM_1034___i 88 GATCGAGATATTGAATTTACCTTTAACACAAGCCAGAAATTCGAGCTCAG 137
BSNT_01867 233 TCGTGTATGATTCTGAGCAC---AAAGAAAGATACCGTTATTCGAAAGAC 279
| |||||||| .||..|| ||.|||..||||||||||||.||||||
BPUM_1034___i 138 T-GTGTATGA---CGAAAACGGAAATGAACAATACCGTTATTCAAAAGAC 183
BSNT_01867 280 AAAATGTTTACGCAGGCTTTTCAA------AACCTGACGCTTGAATCTGG 323
...|||||.||.|||||..|.||| ..||||| .||| .||
BPUM_1034___i 184 CGTATGTTCACACAGGCCATCCAATCATTTGTCCTGA----AGAA--AGG 227
BSNT_01867 324 AGAAACATATGATTTCTC-TGATGTGTGG---AAGGAAGTCCCTGAGCCC 369
.|||.|.|||||||| || .|||...||| ||.|..||| .||||.
BPUM_1034___i 228 CGAAGCCTATGATTT-TCAAGATACATGGTCAAATGGTGTC---AAGCCG 273
BSNT_01867 370 GGAACCTATGA---GGTAAAGGTGACATTTAAGGGCAGGGCGGAAAATCT 416
|||||.||||| ||| .||.||||||||.||.|..||.|||...||
BPUM_1034___i 274 GGAACGTATGAAGCGGT---TGTCACATTTAAAGGAAAAGCAGAAGGGCT 320
BSNT_01867 417 CAAGCAGGTTCAGGCTGTTCAG---------CAGTTTGAAGTCAAATAA 456
.||||| ..||| ||| || ||..||||.||||||
BPUM_1034___i 321 GAAGCA-AATCA-------CAGAAAAGAAAACA-TTCCAAGTGAAATAA 360
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