Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01861 and BPUM_1028
See
Amino acid alignment /
Visit
BSNT_01861 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:22
# Commandline: needle
# -asequence dna-align/BSNT_01861___yitK.1.24716.seq
# -bsequence dna-align/BPUM_1028___yitK.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01861___yitK-BPUM_1028___yitK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01861___yitK-BPUM_1028___yitK.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01861___yitK
# 2: BPUM_1028___yitK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 509
# Identity: 377/509 (74.1%)
# Similarity: 377/509 (74.1%)
# Gaps: 34/509 ( 6.7%)
# Score: 1362.0
#
#
#=======================================
BSNT_01861___ 1 ATGGCAAAAGAAAGCTCATTTGATATTGTATCCAAGGTGGAATTGCCTGA 50
|||||||||||||||||||||||.||||||||.|||||.|||.||||.||
BPUM_1028___y 1 ATGGCAAAAGAAAGCTCATTTGACATTGTATCGAAGGTTGAACTGCCAGA 50
BSNT_01861___ 51 AGTGCAAAACGCAATCCAAATCGCACTGAAGGAAATCAGTACCCGATATG 100
.|||||||||||..|.|||...||.||.||||||||.|..|..||.||||
BPUM_1028___y 51 GGTGCAAAACGCCGTTCAAGCAGCGCTCAAGGAAATTAAAAATCGTTATG 100
BSNT_01861___ 101 ACTTTAAAGGCAGCAAAAGCGACATTTCTTTAGATAAAGAGGAGCTGGTC 150
|.||||||||.||||||||.||.||||||.|.||.|||||.|||||.||.
BPUM_1028___y 101 ATTTTAAAGGAAGCAAAAGTGATATTTCTCTTGAAAAAGAAGAGCTCGTG 150
BSNT_01861___ 151 CTCGTTTCCGATGACGAATTCAAATTAAGC-----CAGCTGAAAGATGTG 195
|||.|.||.|||||.||.||| |||| ||.||.||||||||.
BPUM_1028___y 151 CTCATCTCTGATGATGATTTC-----AAGCTGGAGCAACTAAAAGATGTA 195
BSNT_01861___ 196 CTGGTCAGCAAA-TTGATTAAACGAAACGTACCGACAAAAAACATTGAGT 244
||.||.| |||| .||||.||||||||.||.||.||.||||||||.||.|
BPUM_1028___y 196 CTTGTGA-CAAAGCTGATCAAACGAAATGTTCCAACTAAAAACATCGACT 244
BSNT_01861___ 245 ACGGCAAGGTTGAAAACGCGTCA-------GGCGGAACGGTGCGCCAGCG 287
||||.| |||.||.| || ||||||||.||.||||||||
BPUM_1028___y 245 ACGGAA------AAACCGAG-CATGCCCTTGGCGGAACCGTACGCCAGCG 287
BSNT_01861___ 288 CGCAAAGCTTGTTCA-AGGCATTGACAAGGACAACGCAAAAAAAATCAAT 336
|||.|||| ||.||| .||.|||||..||||||||||.|||||.||||||
BPUM_1028___y 288 CGCGAAGC-TGATCAGCGGAATTGATCAGGACAACGCCAAAAAGATCAAT 336
BSNT_01861___ 337 ACGATCATCAAAAACTCCGGACTGAAAGTAAAGTCTCAGGTGCAGGATGA 386
.|..||||.||..|.|||||..|.|||||.||.||.||..|.||.|||||
BPUM_1028___y 337 GCACTCATTAAGCAATCCGGCATCAAAGTGAAATCACAATTTCAAGATGA 386
BSNT_01861___ 387 TCAAGTGCGTGTCACCGGAAAAAACAAAGATGACCTGCAGCA---GATTA 433
.|||||||||||.||.||||||||.||||||||..|.||..| ||||
BPUM_1028___y 387 CCAAGTGCGTGTAACAGGAAAAAATAAAGATGATTTACAAGAAGTGATT- 435
BSNT_01861___ 434 TCTCAGCTGTGCGGGGAGCAGATCTGCCAATTGACGTTCAATTTATAAAT 483
|||| .|.||||....||||||.|.||.|||||||||||||||||||||
BPUM_1028___y 436 TCTC--TTATGCGTAAGGCAGATTTACCGATTGACGTTCAATTTATAAAT 483
BSNT_01861___ 484 TTCAGATAA 492
||..|||||
BPUM_1028___y 484 TTTCGATAA 492
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.