Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01860 and BPUM_1027
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:22
# Commandline: needle
# -asequence dna-align/BSNT_01860___yitJ.1.24716.seq
# -bsequence dna-align/BPUM_1027___yitJ.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01860___yitJ-BPUM_1027___yitJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01860___yitJ-BPUM_1027___yitJ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01860___yitJ
# 2: BPUM_1027___yitJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1916
# Identity: 1355/1916 (70.7%)
# Similarity: 1355/1916 (70.7%)
# Gaps: 151/1916 ( 7.9%)
# Score: 4656.5
#
#
#=======================================
BSNT_01860___ 1 ATGGGACTTTTAGAAGATTTGCAAAGACAG-GTGTTAATCGGTGACGGCG 49
|||||.||.|||.||||.||.|||| ||.| ||..|.||.|.||||||.|
BPUM_1027___y 1 ATGGGCCTATTACAAGACTTACAAA-ACCGCGTACTGATTGCTGACGGTG 49
BSNT_01860___ 50 CCATGGGGACGCTCCTCTACTCCTATGGCATTGACAGGTGTTTTGAGGAA 99
|.|||||.||.||..|.|||||.||.|||||||||.|.||.|||||.|||
BPUM_1027___y 50 CAATGGGAACACTTTTATACTCTTACGGCATTGACCGCTGCTTTGAAGAA 99
BSNT_01860___ 100 CTCAATATTTC-AAAGCCGGAGGAAATTCAGCGCATACATAAAGCGTATG 148
.|.|||.|.|| |||| ..||.|||.|..|||||.|.||..||||.||||
BPUM_1027___y 100 TTAAATTTATCGAAAG-AAGATGAAGTAAAGCGCGTGCACGAAGCATATG 148
BSNT_01860___ 149 TTGAAGCGGGAGCCAACATTATTCAAACGAATACGTACGGGGCCAACTAT 198
|..|.||.||.||..||||.||||||||.|||||||||||.||.||.|||
BPUM_1027___y 149 TGCAGGCTGGTGCGGACATCATTCAAACAAATACGTACGGCGCAAATTAT 198
BSNT_01860___ 199 ATTAAATTATCCAGACACGGTCTTGAGGATGACATCAAAAAA----ATGA 244
||||||.|||||.|..|||||.|.|||||.|| ||.||| ||.|
BPUM_1027___y 199 ATTAAACTATCCCGTTACGGTTTAGAGGAAGA----AACAAAGCGTATCA 244
BSNT_01860___ 245 AT-CAGGAGGCCGTAAAGATTGC----GCGGGCTTCAGCAGGCGATGCAT 289
|| || .||||.|||.|.||.|| ||.| |.|||||...|||.|
BPUM_1027___y 245 ATACA-AAGGCGGTACAAATCGCAAAAGCAG----CTGCAGGGTCTGCTT 289
BSNT_01860___ 290 ACGTGCTTGGAACGATGGGCGGCATACGGACATTTAATAAAAACGCGTAC 339
|.||.|||||||||||.||.|||||.||.||.|||||.|||||.||.|||
BPUM_1027___y 290 ATGTCCTTGGAACGATTGGTGGCATTCGAACGTTTAACAAAAATGCCTAC 339
BSNT_01860___ 340 AGTCTTGACGAAATTAAGCGCAGCTTCCGCGAGCAGTTGTATCTGCTGCT 389
|...||||.||||||||..|.|||||..|.||||||.|.||..|.||..|
BPUM_1027___y 340 ACGATTGAAGAAATTAAAAGAAGCTTTAGAGAGCAGCTATACATCCTATT 389
BSNT_01860___ 390 GCATGAAGAGCCGGATGGCTTGCTGTTAGAAACATATTATGATTTGGAAG 439
..|||||||.||.|||||..|..||.|||||||.||||||||..||||||
BPUM_1027___y 390 AAATGAAGAACCCGATGGAATATTGCTAGAAACGTATTATGACATGGAAG 439
BSNT_01860___ 440 AAGCCCGTGAA----GTGCTGAAAATCGCGCGCAAAGAGACTGA-TCTTC 484
|||| ||| ||.||..||||.||.||||||||.|| || .||.|
BPUM_1027___y 440 AAGC----GAAGGCCGTTCTCCAAATTGCACGCAAAGAAAC-GACGCTCC 484
BSNT_01860___ 485 CGATTATGCTCAATGTCTCCATGCACGAGCAAGGCGTATTGCAGGACGGA 534
|.|||.|..|.||.|||||||||||.||.||||||||.||.|||||.|||
BPUM_1027___y 485 CCATTGTCATGAACGTCTCCATGCATGAACAAGGCGTGTTACAGGATGGA 534
BSNT_01860___ 535 ACACCGCTT------------TCTGACGCATTGCGATCGATTGCGGATCT 572
||||||||| ||||| ||||...|| |||
BPUM_1027___y 535 ACACCGCTTAGGGATGGTTTATCTGA---ATTGTCCTC---------TCT 572
BSNT_01860___ 573 CGGGGCTGATATCGTCGGCATTAACTGCCGGCTCGGGCCTTATCACATGA 622
.||.||.|||.||||.||||||||||||.||||.||.||||||||.||||
BPUM_1027___y 573 TGGCGCAGATGTCGTTGGCATTAACTGCAGGCTAGGCCCTTATCATATGA 622
BSNT_01860___ 623 TTGAAGCGCTCAGCGAA---GTGCCGATTTTTGATGACGTATTC----TT 665
||.|.||.|| |||| ||.||||||||.|| ..|||| ||
BPUM_1027___y 623 TTCAGGCACT---CGAAGGCGTACCGATTTTAGA----AAATTCTCATTT 665
BSNT_01860___ 666 ATCCGTTTATCCGAACAGCAGTCTTCCTTCGCTTGAAGAGGGACGGCTCG 715
|||.||.|||||.||||||||||||||.||.||||||||.||..|.||||
BPUM_1027___y 666 ATCAGTCTATCCTAACAGCAGTCTTCCCTCACTTGAAGAAGGCAGACTCG 715
BSNT_01860___ 716 TCTATGAAACAGACGACACGTATTTTCAAAACAGCGC-GTCAGAATTCCG 764
|||||||.|||||..||...|||||.|.|||.||.|| .|| |||||..|
BPUM_1027___y 716 TCTATGATACAGATAACGATTATTTCCGAAAAAGTGCACTC-GAATTTAG 764
BSNT_01860___ 765 AAAGCAAGGCGCGCGGATTATCGGCGGCTGCTGCGGCACAACGCCGAATC 814
|||.|||||.||.||.||||||||.||.||||||||.||||||||..|.|
BPUM_1027___y 765 AAATCAAGGTGCACGTATTATCGGTGGGTGCTGCGGAACAACGCCTCAGC 814
BSNT_01860___ 815 ACA-TCAGGGCGATGGCGGAAGC--------AGTTGGCGGGCTGGTTCCG 855
|.| ||| .||.|||||.||||| |.||.|| .|||
BPUM_1027___y 815 ATATTCA-CGCAATGGCTGAAGCGGTCAAGGATTTAGC--------CCCG 855
BSNT_01860___ 856 ATTAAGGAAAAAGAAG--------TCAAAACCCGGGCCAAAGAATTCATT 897
||.|..|||||||||| |.|||| .|||||.|||||
BPUM_1027___y 856 ATCACTGAAAAAGAAGTGAAAGTATTAAAA--------GAAGAAATCATT 897
BSNT_01860___ 898 TCTGTTCATCACGAGCGAACCGAGCCCGGCCTGGATGAGATCGCAGCGAA 947
||..||||..|..||||.||.||.||.||.||.||||||.||||..||||
BPUM_1027___y 898 TCGATTCAAGATCAGCGGACTGAACCAGGACTTGATGAGCTCGCTACGAA 947
BSNT_01860___ 948 AAAACGCTCTATTATCGTAGAGCTGGATCCGCCGAAAAAACTGAGCTTTG 997
||||||..|.||.||.||||||||.||.||.|||||.||.||||..||.|
BPUM_1027___y 948 AAAACGGACGATCATTGTAGAGCTTGACCCACCGAAGAAGCTGAATTTCG 997
BSNT_01860___ 998 ACAAATTTCT-GTCCGCTGCTGCTGAATTAAAAGAA-GCGGGAATCGATG 1045
|.|||||||| || |||.||....||||| |||||| ||.||.||.||||
BPUM_1027___y 998 AAAAATTTCTCGT-CGCGGCAAAGGAATT-AAAGAATGCAGGCATTGATG 1045
BSNT_01860___ 1046 CCCTGACACTCGCCGACAATTCTCTGGCGACCCCGCGGATCAGCAATGTT 1095
||.|||||.|.||.||.||||||||.||.||||||||.||.||||||||.
BPUM_1027___y 1046 CCTTGACATTAGCTGATAATTCTCTTGCAACCCCGCGCATTAGCAATGTG 1095
BSNT_01860___ 1096 GCCTGCGGCGCTCTCATCAAGCAACAGCTCGATATGCGTTCCCTTGTCCA 1145
||.||||||||..|..|.||.||.|||||.|||||||||||.||.|||||
BPUM_1027___y 1096 GCTTGCGGCGCATTATTGAAACAGCAGCTTGATATGCGTTCACTCGTCCA 1145
BSNT_01860___ 1146 TATTACGTGCCGTGACCGTAACATTATCGG-CTTACAGTCACATTTAATG 1194
|||.||.||||||||.|||||..|.||.|| ||| ||.||.|||||.|||
BPUM_1027___y 1146 TATCACATGCCGTGATCGTAATTTAATTGGACTT-CAATCCCATTTGATG 1194
BSNT_01860___ 1195 GGCCTTGATACGTTAGGGCTGAATGACGTGCTTGCTATTACAGGTGACCC 1244
||.||.|||||..|.||..|.|.|||..|..|.||.||||||||.||.||
BPUM_1027___y 1195 GGTCTCGATACCCTTGGTTTAACTGATATTTTAGCCATTACAGGCGATCC 1244
BSNT_01860___ 1245 TTCTAAAATCGGGGATTTTCCTGGTGCGACGTCTGTATATGATTTAACAT 1294
|||||||||.||||||||.||.||.||.||.||.||.|||||||||||.|
BPUM_1027___y 1245 TTCTAAAATTGGGGATTTCCCAGGGGCAACATCAGTTTATGATTTAACCT 1294
BSNT_01860___ 1295 CTTTTGATTTAATCAGGCTGATCAAACAATTCAATGAAGGTCTGTCTCTG 1344
|.||||||||||||.|.|||||.||.||.||.||.|||||.||.|||.|.
BPUM_1027___y 1295 CCTTTGATTTAATCCGCCTGATTAAGCAGTTTAACGAAGGCCTTTCTTTC 1344
BSNT_01860___ 1345 TCTGGAAAACCGCTCGGCAAGAAAACGAATTTCTCAGTTGCCGCCGCATT 1394
||.|||||.|||||.|||||.||.||.|||||.|||||.||.|.|||.||
BPUM_1027___y 1345 TCAGGAAAGCCGCTTGGCAAAAAGACCAATTTTTCAGTAGCTGGCGCGTT 1394
BSNT_01860___ 1395 TAATCCTAACGTCCGCCATCTGGATAAAGCGGTAAAACGGCTTGAGAAAA 1444
|||.||.||.||.||.||..|.|||||.|||||.|||||.||||||||||
BPUM_1027___y 1395 TAACCCGAATGTTCGTCACATTGATAAGGCGGTCAAACGTCTTGAGAAAA 1444
BSNT_01860___ 1445 AAATAGATTGCGGCGCAGATTATTTTGTTTCTCAGCCTGTCTATTCCGAG 1494
||||.||.|.|||.||.|||||||||.||||.||||||||.|||||.|||
BPUM_1027___y 1445 AAATCGAATACGGTGCTGATTATTTTATTTCACAGCCTGTATATTCTGAG 1494
BSNT_01860___ 1495 CAGCAGCTTGTCGATATCCATAACGAAA----TAAAACATCTGAAGACGC 1540
.|.||||||||..|.||.|||.|.||.| | |||.|..|.|..|
BPUM_1027___y 1495 GAACAGCTTGTGAAAATTCATGAGGAGAGCCGT----CATTTAGATAAAC 1540
BSNT_01860___ 1541 CGATCTATATCGGCATCATGCCGCTGACAAGCAGCCGGAATGCCGAATTC 1590
||||.|||||.|||||.|||||..|.|||||||||.|.|||||.||.||.
BPUM_1027___y 1541 CGATTTATATTGGCATTATGCCATTAACAAGCAGCAGAAATGCGGAGTTT 1590
BSNT_01860___ 1591 ATCCATAATGAAATTCCCGGCATTAAGCTGTCTGATACGATTCGCGAAAA 1640
||.||..||||||||||.|||||.||..|.||||||.|.|||||.||.|.
BPUM_1027___y 1591 ATTCACCATGAAATTCCGGGCATCAAATTATCTGATTCCATTCGTGACAT 1640
BSNT_01860___ 1641 AATGGCCCGTGCCGGTGAAGATAAAGAAAAGCAAAAGGCG----GAAGGC 1686
.|||||..|.||||||||.|||||||||||||| ||| ||||||
BPUM_1027___y 1641 TATGGCGAGGGCCGGTGAGGATAAAGAAAAGCA----GCGAGCAGAAGGC 1686
BSNT_01860___ 1687 CTTGCGATTGCACGCTCCCTGCTGGATACGGCATGCGAGCTGTTTAACGG 1736
.|.||||||||.|||||..|..|.|||||.||.|||||..|||||||.||
BPUM_1027___y 1687 TTAGCGATTGCCCGCTCTTTATTAGATACAGCCTGCGAATTGTTTAATGG 1736
BSNT_01860___ 1737 CATCTACTTGATAACGCCTTTCCTCAGATCTGACTTAACCGCTGAGCTTA 1786
|||.||.||.||.||.||||||||..||||.||||||||.||.||.||.|
BPUM_1027___y 1737 CATTTATTTAATTACCCCTTTCCTACGATCAGACTTAACAGCAGAACTAA 1786
BSNT_01860___ 1787 CTTCATATATTCAGCAAAAAGATGAGCAG-CGCCAAAATATCTTTTTGCA 1835
|..|.||.|||||.||.|||||..||.|| | |||.||| ||
BPUM_1027___y 1787 CCACCTACATTCATCAGAAAGAAAAGGAGTC----AAACATC------CA 1826
BSNT_01860___ 1836 T-TAA----------- 1839
| |.|
BPUM_1027___y 1827 TGTCAACTATCACTGA 1842
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