Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00924 and BPUM_1020
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Amino acid alignment /
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:37
# Commandline: needle
# -asequence dna-align/BSNT_00924.1.24716.seq
# -bsequence dna-align/BPUM_1020.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00924-BPUM_1020.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00924-BPUM_1020.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00924
# 2: BPUM_1020
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1804
# Identity: 866/1804 (48.0%)
# Similarity: 866/1804 (48.0%)
# Gaps: 668/1804 (37.0%)
# Score: 1529.5
#
#
#=======================================
BSNT_00924 1 ATGGAATTATCTTTTCTACCTAAA------AACACATTCATAGACCCTAA 44
|||.|||.|.|| || |..|.|||||| ||.
BPUM_1020 1 ATGCAATCAACT----------AAGGCTCCAGTAGATTCAT------TAT 34
BSNT_00924 45 TGGACATAATACAAATGAAGTAAAAAGCTT-------AGTCGATCAATTA 87
| ||.||||.|| |...||||| ||||..||.| |
BPUM_1020 35 T--------TATAAATCAA--AGCCAGCTTGGAAGAGAGTCCTTCCA--A 72
BSNT_00924 88 GCCGGATTAGTTATTGA-ACAT---TCGAGTCATGCT------------- 120
|| .|.|.||.| |||| |||| || |||
BPUM_1020 73 GC------GGCTCTTCATACATCTATCGA--CA-GCTTACTGGATCAATG 113
BSNT_00924 121 GCAAAGAGAGACA-CACTGCCTGCTGTGGAGTCTT---TTG---ATTA-- 161
|||||.|||.||| .|| |.|.|.|||||.|.|| |.| ||||
BPUM_1020 114 GCAAAAAGACACAGGAC--CTTACAGTGGAATATTGCCTGGGAAATTAGC 161
BSNT_00924 162 ---TAGT--------GATATACCCGA----AA----CTGGTATAGAA--- 189
.||| |.||| .|||| || |||| ||||
BPUM_1020 162 GGCAAGTGTCGAATCGCTAT-TCCGATTTCAACCGTCTGG---AGAATCT 207
BSNT_00924 190 ATTGAAAATATCTTGGTAAACCTGCAGGGTATCATCAAAA---------- 229
||||||..|.||| |.||.|.||| ||||
BPUM_1020 208 ATTGAATCTGTCT---------TTCAAGATAT----AAAAGAGCATCTTT 244
BSNT_00924 230 -AC------TCAATGA--------ATCCTCAAAACCCAAGATATATGGGC 264
|| |.|.||| |||||.||..| |.|||
BPUM_1020 245 TACCGCATTTGATTGATGTATCGCATCCTAAATGC----------TTGGC 284
BSNT_00924 265 -CATATGGATTCAATCCCCACTCTCATTTCATG--CTTG----------- 300
|||.||.||| .|||.| |.|||| |||.|| ||||
BPUM_1020 285 ACATCTGCATT--GTCCAC-CGCTCA-TTCCTGCACTTGCCGCAGAGGTG 330
BSNT_00924 301 --GGTGACTTCAT------AAGCAGT----TCCCTTAATAACAATATGCT 338
|||||.|||.| ||.||.| |||.||.|| |||..||.|
BPUM_1020 331 ATGGTGAGTTCCTTTAACCAATCAATGGACTCCTTTGAT--CAAAGTGGT 378
BSNT_00924 339 AAGCCTTGAGATGTCCCCTGTTTT--TTCAAAAGTGGAAGCACAGTTACT 386
| ||| ||..||| || |.|||||
BPUM_1020 379 A----TTG---------CTTCTTTGGTT-----GAGGAAG---------- 400
BSNT_00924 387 CAAAACC---ATTGCCCGTAT-------GTTTGGATATGATGA-TAAGTC 425
|||.|| |.||.| ||| ||||...||||..|| .||| |
BPUM_1020 401 -AAATCCTCAAGTGGC--TATGTGCAAAGTTTTCTTATGTCGACCAAG-C 446
BSNT_00924 426 AGGAGGAGTGA---TGACAAGCGGCGGAAGTCTCGCTAATCTGCATGCAC 472
||..|| || |.||||||||.||||..|...|||| ||.||||...
BPUM_1020 447 AGATGG---GACATTTACAAGCGGTGGAACCCAATCTAA-CTACATGGGG 492
BSNT_00924 473 TTAC-AGTAGCAAGAAAT-CATCAATTAAATATGAAAAAGACA------- 513
||.| ..|.||.|||.|| |.| || |.|| ||||.|||
BPUM_1020 493 TTGCTTCTGGCGAGAGATGCCT---TT---TGTG-AAAACACATGGCAGT 535
BSNT_00924 514 GGTATCTTC--------GGACTT----------TCTGGACAGCCTGTCA- 544
||.||.||| || ||| ||| .||.||.||..|
BPUM_1020 536 GGAATGTTCAGCAGAAAGG-CTTACCAAGTGAATCT-CACCGCATGAGAA 583
BSNT_00924 545 -TCTTTGTTTCG--GACGTCAGCCATACCTCCCTGCAC-------AAAGC 584
|||||| .||| || || .|||.||.||| |||.|
BPUM_1020 584 TTCTTTG-CTCGAAGA--------AT-GCTCACTTCACTGTGAAAAAATC 623
BSNT_00924 585 AGCTATGATCC----TAGGTTTAG--------------GTACCTCCAGTA 616
.||| ||| ||||||||| ||| |.|||
BPUM_1020 624 TGCT----TCCCAGTTAGGTTTAGGAGAGCAGGCAGTTGTA---CTAGT- 665
BSNT_00924 617 TCATTCCGGTAAAAAGCAACAATCTGGCCCGCATGGATATTCATGATTTA 666
||..|.|.|..||||.| .|||.|||||..|..|||||||
BPUM_1020 666 ------CGAGACAGATGAACATT----ACCGAATGGACGTCAATGATTT- 704
BSNT_00924 667 GAAATAAAAA-----TTCATCGTGCAAAGAG-TGAAGG-CCACA------ 703
|||| ||.|| || ||| |||||| .||.|
BPUM_1020 705 GAAA-AAGAAGCTGGTT-----------GAGTTGAAGGAGCAGAACTTGC 742
BSNT_00924 704 TTCCATTTGCTGTTGTCGCAACTGCCGGAACAACTGTGACAGGAAGCATA 753
|.||.|||||.||.||.||.|||..|||.|||||.|
BPUM_1020 743 TGCCTTTTGCGGTAGTAGCCACTTGCGGGACAACGG-------------- 778
BSNT_00924 754 GATCCAATTTTGCCA--ATTG--CCAG-----------AATCACA----- 783
||||||.|| |||| |||| .||.|||
BPUM_1020 779 ------ATTTTGGCAGTATTGACCCAGTTCGAGAGGTATATGACATCGTC 822
BSNT_00924 784 AAGGAAAACGGACTGTGGCTGCATGTAGATGCAGCATATGGCGGCGCTTT 833
|||..|.||||.||||||.|.||.|.||||||.||.||.|||||.||
BPUM_1020 823 AAGCCATACGGTCTGTGGATTCACGCAGATGCTGCCTACGGCGGAGC--- 869
BSNT_00924 834 AATTTTTTCT----GAAAAATATCGTGATAAACTGAG-TGGTATCGAAAT 878
|.||.|..| ||||..||.||..|.||| |.|| .|||||.||..|
BPUM_1020 870 -ACTTGTATTAAGCGAAACCTACCGAAAGAAA-TTAGACGGTATTGAGCT 917
BSNT_00924 879 GGCTGATTCCATTACTTTTAATCCGCAAAAGTGGATGTAC-ATCACAAAG 927
.||||||||.||.|| |||..|| .|||.|||
BPUM_1020 918 TGCTGATTCAATCAC------------------GATTGACTTTCATAAA- 948
BSNT_00924 928 ACCTGTGCAATGACTCTTTTTAA----AAATCGTG--------------- 958
|||| |||.|.| |.|||.||
BPUM_1020 949 -------CAAT-----TTTATCAGCCGATATCCTGCGGAGCATTTTTGCT 986
BSNT_00924 959 -AA--ATACTTGAAACTGATTTCCGT--------ATATC-TGCCCCTTAT 996
|| ||| |||...||||..|| .|||| |||...||||
BPUM_1020 987 AAAGGATA----AAAGCCATTTTGGTTTGATCAATTATCATGCGGATTAT 1032
BSNT_00924 997 ATGAAT---------GA--AACT-GATTTTATT---AATCTGGGTGAAT- 1030
.|.||| || |||| |||..|||| .|||| .||.|||
BPUM_1020 1033 CTTAATCCAAAGGAAGACGAACTCGATGGTATTCTACATCT-CGTCAATA 1081
BSNT_00924 1031 TAGGTGTTCAAGGCACGCGGCATGCTGATATTTTAAAATTATATTTATCA 1080
.|..|||.|||...|||||.|....||||..|.|.||||||..|.|.||.
BPUM_1020 1082 AATCTGTCCAAACGACGCGCCGGTTTGATGCTCTCAAATTACTTCTCTCT 1131
BSNT_00924 1081 CTTC----AACACGTTGGAACAAAAGGAT----ACA-ACCAGTTG---AT 1118
|||| || |||||..|.|||||| |.| |.|| ||| ||
BPUM_1020 1132 CTTCGTCTAA----TTGGAGAAGAAGGATTTGGAGAGATCA-TTGACCAT 1176
BSNT_00924 1119 A--AATAAAAGTTTCGCACTAAACGAAGAATG----------TATAGA-A 1155
| |.|.| |||.||| |||.||| |||.|| |
BPUM_1020 1177 ACCATTCA---TTTTGCA-------AAGGATGTGGCTGAGCTTATTGAGA 1216
BSNT_00924 1156 CAAGTGAAACAGCGGCCTTTTCTTGAGCTT-TATTG--------TGAGCC 1196
.||.||| |||.||| .|.|| ||||||
BPUM_1020 1217 GAAATGA----------------TGACCTTGAAGTGATCAACCCTGAGCC 1250
BSNT_00924 1197 AGATA-CAAACATCTGCTGT----TTCCGAGGTATACCGCATGACATTGA 1241
|||.| ||| |||.|| ||||||..||.| .|||||....|
BPUM_1020 1251 AGAAATCAA-----TGCAGTTGTGTTCCGATTTAAA---GATGACCACCA 1292
BSNT_00924 1242 AAAGGA-----TCAATGGGATAACTGGAACCTGGA-ACTGCAGCAGTTCT 1285
||..|| |||||...||.|.| .||| ||| ||
BPUM_1020 1293 AACAGATGACGTCAATAAAATCATT--CACC-GGACAC------------ 1327
BSNT_00924 1286 TATT-GAAAGAAGAAAATATCTTCTTGTCATTGCCGGAATGGAAAGGAAA 1334
|||| .|||||.||| ||.| ||||||||| ||||
BPUM_1020 1328 TATTCAAAAGAGGAA-----CTGC-TGTCATTGC------------GAAA 1359
BSNT_00924 1335 CCGCTGGCTGCGTGCTGTGTTCCTCAATCCAT--TTATAACAGGTTCGCT 1382
.|..||| |.|||| .|||| .||| |||.|| |||.||
BPUM_1020 1360 ACAGTGG-TTCGTG--------GTCAA-ACATGCTTAAAA----TTCACT 1395
BSNT_00924 1383 T--ATAAA----------------ACAAATGTTCAGAAAAAT-------- 1406
| .|||| |||.||.||.|| .||||
BPUM_1020 1396 TTGTTAAATCCGAGAACGACAATCACACATATTGAG-GAAATCCTTTCTG 1444
BSNT_00924 1407 AGATCAATTTTAT---GATCAAT-ATAAACAA-----------ATT--GT 1439
|.|||..|..||| ||||..| |||..||| |.| ||
BPUM_1020 1445 ACATCGTTGATATCGGGATCGCTCATATTCAATCCGGGAGGGTACTACGT 1494
BSNT_00924 1440 TTAA 1443
|.|
BPUM_1020 1495 TGA- 1497
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