Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01839 and BPUM_1010
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:21
# Commandline: needle
# -asequence dna-align/BSNT_01839___asnO.1.24716.seq
# -bsequence dna-align/BPUM_1010___asnO.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01839___asnO-BPUM_1010___asnO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01839___asnO-BPUM_1010___asnO.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01839___asnO
# 2: BPUM_1010___asnO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1931
# Identity: 1357/1931 (70.3%)
# Similarity: 1357/1931 (70.3%)
# Gaps: 169/1931 ( 8.8%)
# Score: 4551.5
#
#
#=======================================
BSNT_01839___ 1 ------ATGTGTGGAATTACGGGTTGGGTCGATTTTAAAAAGCAGCTCGT 44
|||||||||||.||.||.||||..||.|||||||||||||||.|
BPUM_1010___a 1 ATGATGATGTGTGGAATAACAGGCTGGGCAGACTTTAAAAAGCAGCTCAT 50
BSNT_01839___ 45 C---CAGGA-----AAAACAAACGATGGACAGAATGACAGACACTCTTTC 86
| ||||| .||.|||.| .|||||||||.||..|.||
BPUM_1010___a 51 CCAACAGGATCATGTAATCAATC--------AAATGACAGATACATTATC 92
BSNT_01839___ 87 CAAACGAGGGCCTGATGATTCAA--ACGTTTGGG----GGGAGCACCATG 130
.|||.|||||||.||.|||.||| |||| || |.|||||| |
BPUM_1010___a 93 TAAAAGAGGGCCAGACGATACAAATACGT---GGAAAAGTGAGCAC---G 136
BSNT_01839___ 131 TTTTATTCGGACATAAAAGACTTGCAGTTGTTGATATTGAAGGAGGACGC 180
|||||||.||.||||||||..|.||.|||||.|||.|.|||||.|||...
BPUM_1010___a 137 TTTTATTTGGGCATAAAAGGTTAGCGGTTGTAGATGTAGAAGGCGGAAAA 186
BSNT_01839___ 181 CAGCCGATGGCGTGTACCTATAAAGGGGATACGTACACCATTATTTACAA 230
|||||||||.|.|.|||..||.||....||.|.||.|||.||.|.|||||
BPUM_1010___a 187 CAGCCGATGACATATACACATCAAAACCATGCTTATACCGTTGTATACAA 236
BSNT_01839___ 231 TGGCGAGCTGTATAACACGGAAGATTTGCGCAAAGAATTGCGGGCGC--- 277
|||.|||||.||||||||.||.|||.|..|.|||||||||
BPUM_1010___a 237 TGGAGAGCTCTATAACACAGAGGATATAAGAAAAGAATTG-------TTA 279
BSNT_01839___ 278 ----GGGGCCATCAAT---TCGAGCGTACGTCAGATACCGAGGTGCTTCT 320
|||||||.|..| |.|.||.| ||.|||||.|||||||||||
BPUM_1010___a 280 AAAAGGGGCCACCGCTTTCTTGGGCAT---TCTGATACAGAGGTGCTTCT 326
BSNT_01839___ 321 GCACAGCTACATCGAGTGGCAGGAAGACTGTGTCGA-CCATCTCAATGGC 369
.|||..|||||..||.|||.|||||||.||||| || ||||.|.|||||.
BPUM_1010___a 327 TCACGCCTACACAGAATGGAAGGAAGAGTGTGT-GACCCATTTTAATGGT 375
BSNT_01839___ 370 ATATTCGCTTTCGCTGTGTGGGATGAAAAGCGT-AATCTGCTGTTTGCCG 418
||.||.||.||.|...|.||||||....||||| ||| |..|.|||||.|
BPUM_1010___a 376 ATTTTTGCATTTGTCATTTGGGATAGTGAGCGTGAAT-TATTATTTGCAG 424
BSNT_01839___ 419 CGAGAGACCGTCTCGGTGTAAAGCCGTTTTTTTACACGAAGGAAGGC-TC 467
.|||||||||.|||||.||.|||||.|||||.||.|| ||.|.|.| ||
BPUM_1010___a 425 GGAGAGACCGGCTCGGCGTCAAGCCATTTTTCTATAC--AGAACGTCATC 472
BSNT_01839___ 468 -TTCATTTCTCTTCGGGTCGGAAATCAAAGCAATCCTCGCGCACCCTGAT 516
|||.|||.|.||.||.||.|||||||||||..|.||.||.|||||||||
BPUM_1010___a 473 ATTCCTTTTTATTTGGTTCAGAAATCAAAGCGCTTCTTGCTCACCCTGAT 522
BSNT_01839___ 517 ATAAAAGCGCGAGTGGA-CA-GAACGGGACTTTCTGAAATTTTCGGTCTT 564
||.|||||...|||.|| || || ||||.|.||.||.|||||.|||.|.
BPUM_1010___a 523 ATGAAAGCAAAAGTCGATCATGA--GGGATTATCGGAGATTTTTGGTTTA 570
BSNT_01839___ 565 GGACCGTCCAGAAC-CCCGGGCACTGGCATATTTAAAGGTATAAAAGAAA 613
||||||||.||||| ||.||||| .||..|.||||||||..|||||||..
BPUM_1010___a 571 GGACCGTCTAGAACACCAGGGCA-AGGAGTGTTTAAAGGGGTAAAAGAGC 619
BSNT_01839___ 614 TCCGCCCGGCTCATGCGCTGACATTTTCCAAAGACGGACTTAATATTTGG 663
|..|.||.||||||||..||||.|||||.|||||||||.|...|.|.|||
BPUM_1010___a 620 TGAGACCTGCTCATGCCTTGACCTTTTCAAAAGACGGATTGCGTGTGTGG 669
BSNT_01839___ 664 CGTTATTGGAATGTTGAAAGCGAAAAA-----CATACGGACAGTTTTGAT 708
.|.||.||||||||..||||| | |||||||||....|||||
BPUM_1010___a 670 AGATACTGGAATGTCAAAAGC-----AGGGTGCATACGGACTCACTTGAT 714
BSNT_01839___ 709 GACACGGTTGCCAATGTCAGATCGTTA---------TTTCAGGACGCGGT 749
|||||.| || ||||.|||.| ||.|| ||.||.||
BPUM_1010___a 715 GACACCG----CA----CAGAACGTCAAGGACCTCTTTACA-GATGCCGT 755
BSNT_01839___ 750 GACGCGGCAGCTTGTGTCGGATGTGCCTGTTTGCACATTCCTATCAGGCG 799
.||..|||||||.||.||.||||||||||||||.|||||..||||.||.|
BPUM_1010___a 756 CACAAGGCAGCTCGTCTCTGATGTGCCTGTTTGTACATTTTTATCGGGTG 805
BSNT_01839___ 800 GTCTGGACTCAAGCGCAATTACAGCGATTGCGGCGGGCCATTTTGAAAAG 849
|..|.||.||.||.||.|||||.||.|||||.||....||.|||||.||.
BPUM_1010___a 806 GCGTCGATTCGAGTGCTATTACCGCCATTGCCGCTAAGCACTTTGAGAAA 855
BSNT_01839___ 850 GAAGGAAAAGCACCGCTTCATACTTATTCGATTGATTACGAAGAGAACGA 899
..|||.||||||||.||||||||.|||||..||||.||.||||.|||.||
BPUM_1010___a 856 ATAGGGAAAGCACCACTTCATACGTATTCCGTTGACTATGAAGGGAATGA 905
BSNT_01839___ 900 TAAATTTTTTCAAGCAAGCGCTTTTCAGCCGAATGATGACGGACCATGGA 949
|.||||||||.|||||||...|||.||||||||||..|||||.|||||||
BPUM_1010___a 906 TCAATTTTTTGAAGCAAGTCATTTCCAGCCGAATGCGGACGGTCCATGGA 955
BSNT_01839___ 950 TTGAAAAAATGACAGAGGC-TTTCGGCACAACG---CACCACAAATGCGT 995
||||....|||||..|||| |||| .|||| ||.|||||.|||.|
BPUM_1010___a 956 TTGACCGCATGACCAAGGCGTTTC----AAACGAATCATCACAACTGCAT 1001
BSNT_01839___ 996 CATCAGCCAAAAAGATCTCATTGATCATTTGGAGGAAGCTGTACTGGTCA 1045
|||..|.|||||.||..|...||.|.||||..|||||||.||...||||.
BPUM_1010___a 1002 CATTGGACAAAAGGAGTTGGCTGCTTATTTAAAGGAAGCGGTTGAGGTCC 1051
BSNT_01839___ 1046 AAGACTTGCCGGGAATGGCGGATGTCGACTCATCCCTGCTGTGGTTTTGC 1095
.||||||.|||||.|||||.|||.|.||.||.|||.||||.|||||.||.
BPUM_1010___a 1052 GAGACTTACCGGGTATGGCAGATATTGATTCTTCCTTGCTTTGGTTCTGT 1101
BSNT_01839___ 1096 CGGGAAATCAAAAAGGACTTTGTCGTCAGCCTATCGGGAGAGTGCGCGGA 1145
||.|||||.||||||||||||||.||..|..|.||.||.||.||.|||||
BPUM_1010___a 1102 CGTGAAATTAAAAAGGACTTTGTGGTTGGTTTGTCAGGTGAATGTGCGGA 1151
BSNT_01839___ 1146 TGAGATTTTCGGCGGGTACCCGTGGTTCCATACGGCAGATGTTGAGT--- 1192
|||.|||||.||.||.||.||.|||||||||.|.||| |||
BPUM_1010___a 1152 TGAAATTTTTGGAGGTTATCCTTGGTTCCATTCTGCA-------AGTGAA 1194
BSNT_01839___ 1193 ----CTGGCTTTCCATGGATGAGATCAACGGAGGAGC--GGATCAAGCTG 1236
.|||.|||||.|||||||||||.||||| ||| |.|...||||
BPUM_1010___a 1195 ACGAATGGTTTTCCTTGGATGAGATCGACGGA--AGCTAGAACGCAGCT- 1241
BSNT_01839___ 1237 CTTTC-TGACTCATGGCAGAAAAAATTGAATCTGAAAGAATACGTA-AAT 1284
|||.| .|||||.|||||.|||||..||...||.||||||||.|.| ||.
BPUM_1010___a 1242 CTTACAAGACTCGTGGCAAAAAAAGCTGTCACTAAAAGAATATGCACAAA 1291
BSNT_01839___ 1285 GCCAAATATGAAGAAACCTTGGCAGAAACGCCATTATTAGATGGTGAAAC 1334
| |||.||||||||||||.||||.|||||.||..|.||||||||.|||||
BPUM_1010___a 1292 G-CAAGTATGAAGAAACCGTGGCTGAAACACCTCTTTTAGATGGAGAAAC 1340
BSNT_01839___ 1335 GGGTGTGGATAAAGCAAGAAGACAGCTGTTCTATTTAAATATGCTTTGGT 1384
.||.||.||||||||..|.|||.|.||.||.||.|||||||||.|.||||
BPUM_1010___a 1341 TGGAGTAGATAAAGCCCGGAGAGAACTTTTTTACTTAAATATGGTCTGGT 1390
BSNT_01839___ 1385 TTATGACGAACCTT-TTGGATCGGAAGGATCGCATGAGCATGGGGGCGAG 1433
||||||| |||.|| .|.|||||.||.||.||.|||||.|||||.|||||
BPUM_1010___a 1391 TTATGAC-AACGTTGCTAGATCGAAAAGACCGAATGAGTATGGGTGCGAG 1439
BSNT_01839___ 1434 CCTGGAAGTGCGGGTGCCGTTCGCCGATCACCGGCTTGTGGAATATGTTT 1483
|||.||.||.||.|||||.||.||.||.||.||.|||||.||||||||.|
BPUM_1010___a 1440 CCTTGAGGTACGTGTGCCATTTGCGGACCATCGCCTTGTCGAATATGTAT 1489
BSNT_01839___ 1484 GGAATATTCCGTGGGAAATGAAAATGCATGATAATCGGGAAAAAGGCATT 1533
||||||||||.|||||||||||||||.|||..|||||.||||||||..||
BPUM_1010___a 1490 GGAATATTCCTTGGGAAATGAAAATGTATGGAAATCGTGAAAAAGGGGTT 1539
BSNT_01839___ 1534 TTACGCAAAGCGCTTGAAGGTATTTTGCCTGATGACATTCTGTATCGCAA 1583
|||||.|||||..|.||.||.|||||.||.|||||..|.||.||||||||
BPUM_1010___a 1540 TTACGGAAAGCATTAGAGGGAATTTTACCGGATGAAGTGCTTTATCGCAA 1589
BSNT_01839___ 1584 AAAAAGCCCGTATCCGAAAACACATCATCCGGAATATACAAAAGGCGTCA 1633
.||.||.||.||||||||||||||||||||.|..||||| .||
BPUM_1010___a 1590 GAAGAGTCCTTATCCGAAAACACATCATCCAGCCTATAC--------CCA 1631
BSNT_01839___ 1634 -GCGAATGGCTGAAAACGAT-----CAGA------AGC-CAAAAGGACTC 1670
|| || |||||..||| |||| .|| |||||.||.||
BPUM_1010___a 1632 TGC---TG--TGAAAGAGATGTTAACAGATTGCCTTGCGCAAAAAGATTC 1676
BSNT_01839___ 1671 CGTGCTCCATACCTTGCTGGACAGA----AAACAATTAGATCAGCTTTTA 1716
.||.||.||....||.|| ||| ||.||||||.|.|||.|..|.
BPUM_1010___a 1677 TGTCCTTCACGAATTTCT----AGATCCGAATCAATTAAAGCAGTTGATT 1722
BSNT_01839___ 1717 GAAACGGAAGGCTCCTCC-TTCAAGGTGCCGTGGTTCGGACAGCTCATGA 1765
|||||||||||..|.||| ||||| ||.||.||||..||.||||||||||
BPUM_1010___a 1723 GAAACGGAAGGAGCTTCCTTTCAA-GTCCCTTGGTATGGTCAGCTCATGA 1771
BSNT_01839___ 1766 AGGGACCTCAGCTGATCGCCCATCTTGCTCAAATTCATACA-TGGTTTGA 1814
||||.||.||..|.|||||.|||||.||.||||||||| || ||||||||
BPUM_1010___a 1772 AGGGCCCGCAATTAATCGCTCATCTGGCGCAAATTCAT-CATTGGTTTGA 1820
BSNT_01839___ 1815 AGCGTATCGCATTGATATTGATGAAGGATAA 1845
..|||||||.|||||||| .||||..|||
BPUM_1010___a 1821 GACGTATCGAATTGATAT---AGAAGCGTAA 1848
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