Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01838 and BPUM_1009
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:21
# Commandline: needle
# -asequence dna-align/BSNT_01838___yisN.1.24716.seq
# -bsequence dna-align/BPUM_1009___yisN.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01838___yisN-BPUM_1009___yisN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01838___yisN-BPUM_1009___yisN.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01838___yisN
# 2: BPUM_1009___yisN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 657
# Identity: 334/657 (50.8%)
# Similarity: 334/657 (50.8%)
# Gaps: 228/657 (34.7%)
# Score: 682.0
#
#
#=======================================
BSNT_01838___ 1 ATG---AAACG---GAAACA-ATTGTTATATACAGAG-GAACGAAAATGG 42
||| ||||| |||.|| .||| .||...| ||.||||.||||
BPUM_1009___y 1 ATGGAAAAACGAATGAATCAGCTTG-----AACGCTGCGACCGAAGATGG 45
BSNT_01838___ 43 -GAATACGGCACCA----TCCTCATCGAAGAC-GGCGTCTGTTTAATCGA 86
|.| |||| | |.|||||.|||.|| |||.| |||.|.||.||
BPUM_1009___y 46 TGCA-ACGG----ATATTTACTCATTGAAAACGGGCAT-TGTCTGATTGA 89
BSNT_01838___ 87 AAACGGAGAAGGTGATATACTTTTGGCGGACACTCTCCAACACAGCCC-- 134
|.|.|.||||||.||.||..|..|..|.||.|.|||.||| |||.|
BPUM_1009___y 90 AGATGAAGAAGGAGACATCATGCTACCAGAAAGTCTTCAA---AGCACGA 136
BSNT_01838___ 135 -AATCTGGGTCCATCATAAAGGAAAGTG------GGAGCAA--------- 168
.||||| ..|||||||||.|| ||| |||
BPUM_1009___y 137 TGATCTG-------TTTAAAGGAAAATGATAGATGGA-CAAAAGGTGAAC 178
BSNT_01838___ 169 -GC-CGGCTTCCAGGAT---------CAATTG------GTTCTGGCAT-- 199
|| ||| |||||.||| .|||.| ||| .|.|||
BPUM_1009___y 179 TGCTCGG-TTCCATGATACTTCATGAAAATGGAGAGCTGTT-AGACATAC 226
BSNT_01838___ 200 ---GCGGTGAAGA----AAACAT-----CTCCCTTTCCGGGGGAGAACGC 237
|||||||||| .||.|| .||.|||.|| .||.||
BPUM_1009___y 227 AAGGCGGTGAAGAGATTCAATATACGGCATCACTTGCC------AAAGGC 270
BSNT_01838___ 238 ATCCGCTATGAGAAATCAGTCAAGCGGCC-GCTCATGGCGCTTTTGGATT 286
.| ||| ||| || .|||||| |||| ||
BPUM_1009___y 271 TT--GCT-TGA----------------CCTTCTCATG-----TTTG--TT 294
BSNT_01838___ 287 CGCTTGACGACGAAACCTTTCTCGCATTTCTG-CAGCACTTGCA------ 329
| || ||||.|.| |.|||.|| ||.|| |||||
BPUM_1009___y 295 C-CT-------GAAAACGT-----CTTTTATGACATCA-TTGCACAGATC 330
BSNT_01838___ 330 ---CAGCTTCGGCTTATCGGTATTCGATTGCGTCTTTTCT-----TATAA 371
|||||| |||||.||.||.|.||||| ||.|||||| |.|.|
BPUM_1009___y 331 GAGCAGCTT-GGCTTTTCTGTCTACGATT--GTGTTTTCTCCTCCTTTCA 377
BSNT_01838___ 372 TAAAGGAGTCTTTTCGAATACTTCGGCGGGGCAGGGTGTGTCCTTTTATC 421
| |||||||.|..| ||.||.||.|.||
BPUM_1009___y 378 T-------TCTTTTCAACAA-----------------GTTTCTTTCTTTC 403
BSNT_01838___ 422 ACTTTTCAAATGACACCGCACAATGCGCGATGCAGCATCACT-------- 463
|.||||| |||| |||.||..||||||
BPUM_1009___y 404 AGTTTTC----GACA-------------GATACACAATCACTTGCCCTTC 436
BSNT_01838___ 464 ----ACAGCAACGA--------AGGGACAGGAGACCGTTTTGAATGGACG 501
.|| |.|||| .|||||| |...||||||||||||||.
BPUM_1009___y 437 AATGTCA-CCACGATTTCGCTTTGGGACA--AATTCGTTTTGAATGGACC 483
BSNT_01838___ 502 GCTTCAAACGGAAAGCGATCCATTATGTATTCAGCAGTCCAACGGGGGCG 551
.||||..|.||..|.||.||..| ||| |||||...|.| |
BPUM_1009___y 484 ACTTCTGATGGTCACCGTTCAGT------TTC-GCAGTTTGATG-----G 521
BSNT_01838___ 552 CAAATAA 558
||.||||
BPUM_1009___y 522 CATATAA 528
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