Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01835 and BPUM_1008

See Amino acid alignment / Visit BSNT_01835 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:21
# Commandline: needle
#    -asequence dna-align/BSNT_01835___yisL.1.24716.seq
#    -bsequence dna-align/BPUM_1008___yisL.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01835___yisL-BPUM_1008___yisL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01835___yisL-BPUM_1008___yisL.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01835___yisL
# 2: BPUM_1008___yisL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 409
# Identity:     248/409 (60.6%)
# Similarity:   248/409 (60.6%)
# Gaps:          92/409 (22.5%)
# Score: 690.0
# 
#
#=======================================

BSNT_01835___      1 ATG---ACACACCTACATATTACGACATGGGTGGTAGCG------CTGAT     41
                     |||   ||.||..||||||||||..||||||||.||| |      ||.||
BPUM_1008___y      1 ATGGGAACGCATTTACATATTACAGCATGGGTGCTAG-GAATTATCTTAT     49

BSNT_01835___     42 TCT-----GCTTTTCGTCAGCTACTCGCTGTATTCGTCAGGAAGTG-CAA     85
                     |||     ||.|||     ||| ||.||||     ||.|  ||..| |||
BPUM_1008___y     50 TCTTCGTGGCCTTT-----GCT-CTAGCTG-----GTAA--AAACGACAA     86

BSNT_01835___     86 AGGGCGCAAAAAT----CACTCATATGATTCTGCGGTTATTCTATATCCT    131
                     | ||.||.|||||    |||    ||||||.|..|.|||||.||    ||
BPUM_1008___y     87 A-GGTGCTAAAATTGTGCAC----ATGATTGTCAGATTATTGTA----CT    127

BSNT_01835___    132 T----ATTATTTTGACAGGAGCTGAGCTGTTTGTCCGTTTCGCCAACTGG    177
                     |    |||||....|||||.|..|||||||.||     |||||  ||.||
BPUM_1008___y    128 TAATCATTATCGCCACAGGCGTAGAGCTGTATG-----TTCGC--ACAGG    170

BSNT_01835___    178 AACGGAGAATAC-----------GC--------CGGCAAAATGATTCTGG    208
                     ||.|.|||.|.|           ||        |||.|||||||||||.|
BPUM_1008___y    171 AATGAAGATTCCAGGTTTCGGTGGCGAGTATATCGGTAAAATGATTCTCG    220

BSNT_01835___    209 GCATTATCACC-----ATCGGCCTGATGGAAATGCTCCTCATCCGCAAGA    253
                     |.||     ||     ||||||.|.|||||||||...||..|.|||||||
BPUM_1008___y    221 GTAT-----CCTAGTGATCGGCTTCATGGAAATGACACTTGTACGCAAGA    265

BSNT_01835___    254 AAAAAGAAAAATCAACAGGAGGCCTGTG----GATCGGCTTCGTCATTGT    299
                     ||||||.||||||    ||.|.|..|||    |||.||.||..||||..|
BPUM_1008___y    266 AAAAAGGAAAATC----GGTGACTGGTGTATTGATTGGTTTTATCATATT    311

BSNT_01835___    300 C-CTTTTGCTGACAGTGCTGCTCGGTCTGCATTTGCCAATTGGTTTTCAA    348
                     | |..||| ||||..|.||.||||||.|.|.|.||||.||||||||.||.
BPUM_1008___y    312 CGCGATTG-TGACCATTCTTCTCGGTTTACGTCTGCCGATTGGTTTCCAT    360

BSNT_01835___    349 TTGTTTTAA    357
                     .|.||||||
BPUM_1008___y    361 ATCTTTTAA    369


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