Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01823 and BPUM_1001
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:20
# Commandline: needle
# -asequence dna-align/BSNT_01823___gerPC.1.24716.seq
# -bsequence dna-align/BPUM_1001___gerPC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01823___gerPC-BPUM_1001___gerPC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01823___gerPC-BPUM_1001___gerPC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01823___gerPC
# 2: BPUM_1001___gerPC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 676
# Identity: 423/676 (62.6%)
# Similarity: 423/676 (62.6%)
# Gaps: 113/676 (16.7%)
# Score: 1264.0
#
#
#=======================================
BSNT_01823___ 1 ------ATGTATG---ATCAATCTGTTTCCTCTTACCTGCAAAACT---- 37
||||||| ||||| .||||..||
BPUM_1001___g 1 ATGTCAATGTATGAATATCAA----------------AGCAACGCTTCAC 34
BSNT_01823___ 38 ---TGAATTCCTTCGTTCAGCAGCAGGCGATTCACATTCAGCA------- 77
||.||..|.||.||||..|||| .||| ||.||
BPUM_1001___g 35 AGGTGCATGGCATCATTCAAAAGCA-------AACA--CAACAAATCATG 75
BSNT_01823___ 78 --GCTCGAACGTCA----GCTGAAAGAGATTCAAACTGAAATGAATACGA 121
|||.||| | |||.||.|||.||||....||||||.|.|.||
BPUM_1001___g 76 ATGCTTGAA----AAAAGGCTTAACGAGCTTCAGCAGGAAATGCAAATGA 121
BSNT_01823___ 122 TGAAACAGCGG-----CCGGCCACTACCATTGAGCGTGTGGAGTATAAAT 166
|.|| || |||.|.||.||.|||||.||..|.||.|||.|||
BPUM_1001___g 122 TCAA-----GGATAAACCGACAACGACGATTGAACGGATTGATTATCAAT 166
BSNT_01823___ 167 TTGATCAGCTGAAAATCGAAAGGCTCGACGGGACTTTGAATATCGGCTTA 216
|||||||.|||||||||||..||||.||.||.||..|||||||||||.|.
BPUM_1001___g 167 TTGATCAACTGAAAATCGAGCGGCTGGAAGGTACGCTGAATATCGGCCTC 216
BSNT_01823___ 217 AATCCTACTGACCCGAACAGCGTCCAAAACTTTGAAGTCAGCCAGTCGAC 266
|||||..||||.||.|||||.||.||||||||||||||..||||..|.||
BPUM_1001___g 217 AATCCATCTGATCCAAACAGTGTTCAAAACTTTGAAGTGGGCCAAACAAC 266
BSNT_01823___ 267 A---CCGCAAATCGGGATGATGCAGCAGGAAGAGAGCGCTCAGC------ 307
| |||...||.||.|||||||||| ||||.|..|||.|.|
BPUM_1001___g 267 AACCCCGGGCATTGGAATGATGCAGC---AAGAAATGGCTGATCAATTTT 313
BSNT_01823___ 308 TCATGCAGCAGATCCGCCAGAATGTCGA--CATGTACTTAACCGAGGAAA 355
||| |.||.|..||||||..|||||| |||.| ||||.|||.|||.
BPUM_1001___g 314 TCA---ATCAAACACGCCAGCTTGTCGACGCATTT--TTAAACGAAGAAG 358
BSNT_01823___ 356 TCCCAGATATTTTGGAACAGCTTGAAAACCAATATGACAGCAG----ACT 401
..|||||..||.|.|||.||||.||..|.|.|||.|| || .||
BPUM_1001___g 359 CGCCAGAACTTCTTGAAGAGCTAGAGCAACGATACGA----AGGGTCTCT 404
BSNT_01823___ 402 TGACGATACAAACAGACATCATGTTATTGAAGACATCAGAAAACAAATGG 451
|||.||.|..||||.|||.||..|.||||||||||||.||||||||||.|
BPUM_1001___g 405 TGATGAAAGTAACAAACACCACATCATTGAAGACATCCGAAAACAAATTG 454
BSNT_01823___ 452 ACAGCCGAATCCATTATTAT-------ATGTCCCATATCAAAAAAGAAGA 494
|||||.|||||.|.|||||| |..||||..|.| ..||||
BPUM_1001___g 455 ACAGCAGAATCAAATATTATGCAGGACAGCTCCCGCACC----GGGAAG- 499
BSNT_01823___ 495 ACAT-ACACCGCCTGCA-CAATATGCAGAACATATCGCTGAGCATGTGAA 542
|.|| ||.||| ||||| | .|.||||.||.||.|||||..|||||||
BPUM_1001___g 500 ATATGACCCCG-CTGCAGC---GTTCAGAGCAAATTGCTGAATATGTGAA 545
BSNT_01823___ 543 GCGTGATGTCATCCGCGCTGTAGAACACTTTCTGGAGCATATTCCATCAG 592
||.||||||||..||.||..|.||||||||..|.|..|||||||||...|
BPUM_1001___g 546 GCATGATGTCAAACGGGCAATTGAACACTTCTTAGCCCATATTCCAAATG 595
BSNT_01823___ 593 AAATGAAAGGAGATGAGCAAGCATGA 618
|||.|||||||||.||..|.|.||||
BPUM_1001___g 596 AAACGAAAGGAGAGGAAAACGGATGA 621
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