Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01813 and BPUM_0995
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:19
# Commandline: needle
# -asequence dna-align/BSNT_01813___sbcD.1.24716.seq
# -bsequence dna-align/BPUM_0995___sbcD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01813___sbcD-BPUM_0995___sbcD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01813___sbcD-BPUM_0995___sbcD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01813___sbcD
# 2: BPUM_0995___sbcD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1220
# Identity: 852/1220 (69.8%)
# Similarity: 852/1220 (69.8%)
# Gaps: 88/1220 ( 7.2%)
# Score: 2782.5
#
#
#=======================================
BSNT_01813___ 1 TTGCGGATTTTACATACGGCTGACTGGCATCTTGGAAAAACGCTTGAAGG 50
.||.|||||.|.|||||.||.||.||||||.|.||.|||||.||||||||
BPUM_0995___s 1 ATGAGGATTCTGCATACAGCGGATTGGCATTTAGGGAAAACCCTTGAAGG 50
BSNT_01813___ 51 AAGAAGCAGGC-TGAGTGAACAGGCCGATGTGCTGGATGAA----ATAAA 95
..|||||.||| ||| |||.||.||..|..|..|.|||||| ||.||
BPUM_0995___s 51 CCGAAGCCGGCTTGA-TGAGCAAGCACAGTTTTTAGATGAACTGTATCAA 99
BSNT_01813___ 96 TACGATTGTAAAGGATGAGCAGATCGATGCCATTGTAATGGCGGGGGATG 145
||.||.||.||.|||||.||.||||.||||||.|||||.||.||||
BPUM_0995___s 100 ----ATCGTGAAAGACGAGCACATTGATGTCATTGTGATGGCTGGTGATG 145
BSNT_01813___ 146 CATTTGACACCGTAAACCCGCCAGCTTTAGCCGAGCAGCTGTTTTATGAA 195
|.|||||.||.||.||.|||||.|||..|||.||||||||.|||||||||
BPUM_0995___s 146 CCTTTGATACAGTGAATCCGCCTGCTAGAGCAGAGCAGCTTTTTTATGAA 195
BSNT_01813___ 196 AGCCTGTCTGCGCTTAGC-GACAGAGGAAAGCGCCCGATCGTCGTCATTG 244
|||||.||||| ||||.| ||.|.||||||.||.|.|.|.||.||||||.
BPUM_0995___s 196 AGCCTATCTGC-CTTATCTGATAAAGGAAAACGACAGGTAGTAGTCATTT 244
BSNT_01813___ 245 CCGGAAACCACGATAATCCTGACCGTTTGTCCGCCGCTTCACCGCTGACA 294
|.|||||||||||||||||.||.||.||.||.||.||.||.||..|.|||
BPUM_0995___s 245 CAGGAAACCACGATAATCCGGATCGCTTATCAGCTGCATCGCCTTTAACA 294
BSNT_01813___ 295 CATGAAAACGGCATTCATTTAATCGGTTATCCGACAACAGAGCCGATTCA 344
.||||..|.||.|||||||||||.||.||||||||.|..|| ||
BPUM_0995___s 295 AATGATCAAGGGATTCATTTAATTGGATATCCGACTAATGA-------CA 337
BSNT_01813___ 345 T-ATT------GAAGTGCCTTCAGCAGGA-GAGCTTTTGGCGGTTGGAGC 386
| ||| ||.||.|||||.|| ||| ||.|.|||..|..|||..||
BPUM_0995___s 338 TCATTCGAGTCGATGTTCCTTCTGC-GGATGAACGTTTATCCATTGCGGC 386
BSNT_01813___ 387 GCTGGCGTACCCATCTGAAGCGCGGTTAAATGAAGTGCTATCCGATACGT 436
.||.||.||.||.|||||.|||.||.|.|||||.||.||..|.||.||.|
BPUM_0995___s 387 ACTCGCTTATCCGTCTGAGGCGAGGCTGAATGAGGTACTGGCTGAAACAT 436
BSNT_01813___ 437 TTGATGAAAAGCTGCTCCGTGATCACTATGATGTGAA-AATCAGGCAGGC 485
||||.||.||..||||.||||||||.||..||.|.|| |.||| .||.||
BPUM_0995___s 437 TTGAAGAGAAATTGCTTCGTGATCATTACAATTTAAAGATTCA-ACAAGC 485
BSNT_01813___ 486 GTTTGAGCATATGA-----CAAGCCGGTTCCGGAAC--GATGCAGTGAAG 528
||||.|.|||.|.| ||| ||.| ||| |||.|.|||||.
BPUM_0995___s 486 GTTTCAACATTTAAGTACTCAA-----TTTC--AACCGGATACGGTGAAT 528
BSNT_01813___ 529 ATTGCCGCCAGCCATATTTATGTGGCAGGCGGAAACCAAACCGATTCAGA 578
||.||..|.|||||.|||||||||||.||.||||..|||||.||||||||
BPUM_0995___s 529 ATCGCAACAAGCCACATTTATGTGGCTGGAGGAAGTCAAACAGATTCAGA 578
BSNT_01813___ 579 GCGGCCGATTGAAGTCGGCGGTGCATACACGGTGGCTGCTGAAAGCCTGC 628
..|.|||||||||||.|||||.|||||.||.||.||.||||||||.||||
BPUM_0995___s 579 AAGACCGATTGAAGTAGGCGGCGCATATACCGTTGCGGCTGAAAGTCTGC 628
BSNT_01813___ 629 CGGCAGATGCCGCT---TACGTTGCGCTCGGCCATTTGCATCGCCCGCAA 675
||||..||||| ||.|||||.||.||.||||||||..|.||||||
BPUM_0995___s 629 ---CAGAATCCGCTTGCTATGTTGCACTTGGTCATTTGCACAGGCCGCAA 675
BSNT_01813___ 676 ACGATCAAGCGGGCGCGGACGCTTGCGCGTTATTCAGGATCTCCGCTCGC 725
||||||||.||.||....|||.||||.||||||||.|||||.||.||.||
BPUM_0995___s 676 ACGATCAAACGTGCCAAAACGATTGCTCGTTATTCTGGATCACCACTTGC 725
BSNT_01813___ 726 CTACAGCTTTTCTGAAGCGGGCTACGCTAAATCAGTGACGATTGTGGACG 775
.||.||||||||||||.|.|||||.||.||||||||.||.|||||.||.|
BPUM_0995___s 726 TTATAGCTTTTCTGAATCAGGCTATGCCAAATCAGTCACAATTGTAGAGG 775
BSNT_01813___ 776 CAAAGCCTGGGGAAGAGGCCACTTGGCAAGAGGTGTTATTATCAAGCGGC 825
||||.||....|||.|.||.|..|||.||||.|||||.|||||.|||||.
BPUM_0995___s 776 CAAAACCGAATGAAAAAGCAAGCTGGAAAGAAGTGTTTTTATCGAGCGGA 825
BSNT_01813___ 826 AAGCCACTTGTGAAGTGGAAAGCGGCAAATGGATTGAGTGAGGTGTAC-A 874
|||||||||.||||.|||||.|||.|..|.|||.|||||.|.|||||| |
BPUM_0995___s 826 AAGCCACTTATGAAATGGAAGGCGACTGAGGGACTGAGTCAAGTGTACGA 875
BSNT_01813___ 875 GCTGGCTGGATGAAGACAGAGATCAGAATGCTTGGATTGACCTGGAAATC 924
| |||.||||||||.|..|.||||...|.||.||||||||.||.||.||.
BPUM_0995___s 876 G-TGGTTGGATGAAAAACGGGATCTTCAGGCATGGATTGATCTAGAGATT 924
BSNT_01813___ 925 CGTGTCGCGGACCAGCTGTCACTTGAAGAGATTCA-CAGGCTGCGGAAGG 973
|.|.|..|.||.|||||.||..|||||||.||.|| || |||.||.|||.
BPUM_0995___s 925 CATTTAACAGATCAGCTCTCTATTGAAGAAATCCATCA-GCTCCGAAAGC 973
BSNT_01813___ 974 CGCACCCGGGCTTTATCCATATCAGGCCGGTTTTTGAAGAAC-GGAACAA 1022
.|||....||.|||.|.|||||..|.||....||..|||||| ..|.|||
BPUM_0995___s 974 AGCATAGTGGGTTTGTTCATATTCGTCCAAAATTCAAAGAACTACAGCAA 1023
BSNT_01813___ 1023 AGACCGGGAACGGATC--------GAGGTTAAACATGTCTCAATCGAGGA 1064
|.| ||| ||.| |.||..|||| ||||.|||||.||
BPUM_0995___s 1024 ATA----GAA--GAGCAAAAGCAAGTGGAAAAAC---TCTCGATCGAAGA 1064
BSNT_01813___ 1065 CCGCTTTAAGAAATTTTATGAAAAACAAAC---TGGCGGTGCGGTGCCGG 1111
..|.||...|||.||||||||....||.|| ||||||| .||||.|
BPUM_0995___s 1065 GAGGTTCGTGAAGTTTTATGAGCGCCAGACAGGTGGCGGT---TTGCCTG 1111
BSNT_01813___ 1112 ATGAAGAAATGGTGAAGCTGTTTTTAGAGCTTGC-----ATCAGGCGTTG 1156
|||||.|||..||.||.||||||||||||||.|| || |.||
BPUM_0995___s 1112 ATGAAAAAACAGTCAAACTGTTTTTAGAGCTAGCCAATGAT-ATGC---- 1156
BSNT_01813___ 1157 AAGAGGAGGATGCGAAATGA 1176
||||||||||.||||..|||
BPUM_0995___s 1157 AAGAGGAGGAAGCGACTTGA 1176
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