Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01795 and BPUM_0991
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:17
# Commandline: needle
# -asequence dna-align/BSNT_01795___yhjN.1.24716.seq
# -bsequence dna-align/BPUM_0991___yhjN.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01795___yhjN-BPUM_0991___yhjN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01795___yhjN-BPUM_0991___yhjN.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01795___yhjN
# 2: BPUM_0991___yhjN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1289
# Identity: 757/1289 (58.7%)
# Similarity: 757/1289 (58.7%)
# Gaps: 277/1289 (21.5%)
# Score: 2061.5
#
#
#=======================================
BSNT_01795___ 1 TTGAAGAAAGACGAAAATCTCC-TCAAA--GATCT-ATGGTTTATCGCAA 46
|.||||.|.|.|||...|| ||.|| ||||| || ||
BPUM_0991___y 1 ---ATGAAACAAGGAAACAGCCTTCGAACCGATCTCAT------TC---- 37
BSNT_01795___ 47 TCAGTGC----AGCCGGGGGGTTTA-------TTCTT---TCATTAACCG 82
|||.||| ||| |||||| ||||| ||.|||||.|
BPUM_0991___y 38 TCATTGCGATAAGC-----GGTTTAGGTGGATTTCTTTTGTCTTTAACAG 82
BSNT_01795___ 83 GAATATCAATTGGATGGATGATCGGAACACTGAT---------------- 116
|.||.||.|||||.||||||.|.||.|||.|.||
BPUM_0991___y 83 GTATGTCTATTGGCTGGATGGTAGGTACATTAATGACAGCAGCTTTTATT 132
BSNT_01795___ 117 ----TGTCGCCTGCTGCCTCGCCATGATACGGCCGGCATGGCTGATGATG 162
|| |||| |||.|.||.||.|.|.|| .|.|.|
BPUM_0991___y 133 GCGATG-CGCC----GCCCCACCCTGTTTCAGC-----------GTAAAG 166
BSNT_01795___ 163 GCACCAG-ACCAAAAAGGAATTAACCGACGATGGCTCGC-CCTCGGGCAG 210
|.||||| ||| ..|.|.|||.||.|..||||||| || |||.|||||.
BPUM_0991___y 167 GAACCAGCACC--TTACGTATTCACAGCAGATGGCT-GCTCCTTGGGCAA 213
BSNT_01795___ 211 ATGATCCTCGGCATCGAATTGGGCCAAAAGCTGAATTT----ATCCGTTC 256
.|.||.|||||.||||||.|.||.||.||..|||||.| .||| |||
BPUM_0991___y 214 TTCATTCTCGGAATCGAACTCGGACAGAAAATGAATATGAAGGTCC-TTC 262
BSNT_01795___ 257 TC-TCTGTTCTCAAAGACCATTGGTTTTCAGTCGGCGTT--ATGCTGATA 303
.| |||...||.||| |||||.|..|.|| |.||| |||||..|.
BPUM_0991___y 263 ACATCTTCGCTGAAA----ATTGGCTCCCTGT--GAGTTTCATGCTCGTC 306
BSNT_01795___ 304 TTGTCTATCCTGCTGGCCATGCTGTCAGGATATGTGCTT-TGGCGTTTCA 352
||.|||||.||.|||||.|||||.|||||.|.||| ||| |||....|.|
BPUM_0991___y 307 TTTTCTATTCTACTGGCGATGCTCTCAGGCTTTGT-CTTATGGAAGCTGA 355
BSNT_01795___ 353 GCAAAACGGATATGATGACTAGCTTTGTCGGCACCGCTCCCGGCGGACTT 402
|||||||.||||||.||||.|||||||||||.||.||.||||||||..|.
BPUM_0991___y 356 GCAAAACAGATATGCTGACAAGCTTTGTCGGAACTGCCCCCGGCGGTTTA 405
BSNT_01795___ 403 TCCGCCATGCCGAGCATCGCACAGGAAGTAGGCGCCAATACCGCTATAGT 452
|||||.||||||.|.||.||.||.||.||.||.||||||||.|||.|.||
BPUM_0991___y 406 TCCGCTATGCCGGGGATTGCCCAAGAGGTGGGAGCCAATACAGCTGTTGT 455
BSNT_01795___ 453 CAGCCTCGTTCAAATGATGCGTGTGCTGCTCGTGGTGCTTTCCATTCCGT 502
.||.|||||.||||.|||.|||||..|..|.||.||.||..|.||.||.|
BPUM_0991___y 456 GAGTCTCGTGCAAACGATACGTGTATTAATGGTTGTACTCACTATCCCAT 505
BSNT_01795___ 503 TTTTAGTCATTCTGATCT--ATACAAAA---CAAG-----------ATCG 536
||..||| .|.|.||.| |||||||| |||| .|||
BPUM_0991___y 506 TTACAGT--GTTTTATTTAAATACAAAAAACCAAGCAGATGCGGCTGTCG 553
BSNT_01795___ 537 TACCGCAAGTGCCGCAACAGAGACAATTTCTTCTGCAACGACAGATTTTA 586
|..|.||||.| ||.| |..|||||||.| .|| ||||
BPUM_0991___y 554 TTACACAAGGG-------AGCG-CTTTTTCTTCGG--GCG-----TTTT- 587
BSNT_01795___ 587 GGCTCGCTCCCGTT--------TTGTGGACCGTCATTCTTATTCTCGCTG 628
|.|||.|| |..|||||||.....||||||.|.|.||
BPUM_0991___y 588 ------CACCCTTTCAAACATCTCTTGGACCGCTGCGCTTATTTTAGGTG 631
BSNT_01795___ 629 CCTGGGGAGCTT-------GCAAAGC--TGCGAAATTTTTAAAATTT-CC 668
|||| |||| ||..||| |.|| |.|| .|||| ||
BPUM_0991___y 632 CCTG----GCTTATGTCACGCCTAGCAGTTCG----TCTT--CATTTCCC 671
BSNT_01795___ 669 AGCTCCATGGCTGCTCGGCAGCATGCTCGGTGTAGCAATTGTACATGTTG 718
.|||||.||||||.|.|||||||||||.||.||.|||..|.|.||.|||.
BPUM_0991___y 672 TGCTCCTTGGCTGATTGGCAGCATGCTAGGCGTCGCAGCTCTTCAAGTTA 721
BSNT_01795___ 719 GCGGAGCTGCGGTGACAGGGCAC-----------GACATGATGGCATGGT 757
| ||||| |||||| ||..||||..|.|..|
BPUM_0991___y 722 G------TGCGG-----GGGCACTCATGGGTTATGATTTGATTCCTTATT 760
BSNT_01795___ 758 GGCCGTCACAAGCTAACCATGTATCACAAGTATTTCTCGGGGCAACGATC 807
||||..|||||||.|||..||..||.|||||||||||.||.|||||.|||
BPUM_0991___y 761 GGCCAGCACAAGCGAACATTGCGTCTCAAGTATTTCTAGGTGCAACCATC 810
BSNT_01795___ 808 GGCTCTAAGATGTACAAA-AGCATGTTTGCCGGCGT------CACCCGTA 850
||.||.||.|||.|.||| || |||||||.|||..| |||
BPUM_0991___y 811 GGTTCAAAAATGAATAAAGAG-ATGTTTGTCGGACTAAAAAACAC----- 854
BSNT_01795___ 851 TTATCATCGTCGGGTTTGTCTCGTCCGTCGGTT---------TAATCGCA 891
|.||||.|| |..||| ||||.||| ||||.||.
BPUM_0991___y 855 -TCTCATTGT---GGCTGT------CGTCAGTTCAGCTGGGCTAATTGCT 894
BSNT_01795___ 892 G-CAATGTTTTTGAGCGCCGTGATCGTTTCCGA--GCTG-----ACAGGA 933
| ||.|| |..|.||| ||..||.||| |||| ||.||.
BPUM_0991___y 895 GCCACTG-TCCTCAGC-------TCAATTGCGATTGCTGAGATCACTGGT 936
BSNT_01795___ 934 ATTTCGCTCATCACTTCTGTACTGGCATTTGCGCCCGGCGGGATTGCAGA 983
|||||..||||.||..|..|.||.||.|||.||||.|||||.||||||||
BPUM_0991___y 937 ATTTCTGTCATTACAGCCATCCTTGCTTTTTCGCCTGGCGGTATTGCAGA 986
BSNT_01795___ 984 GATGGCGACGACGTCAGTTACCATACATGCTGATTCCACCTTTGTCGTTG 1033
||||||.||.||..|.||.||..|.||.|..|||||.||||||||.||.|
BPUM_0991___y 987 GATGGCAACAACAGCGGTCACACTGCACGAGGATTCTACCTTTGTTGTAG 1036
BSNT_01795___ 1034 CGGTTCAGGTCATTCGCGTCATTCTGGTTATTGCCCTGCTGCCGCCGTTT 1083
|.||.||.|||.|..|..|.|||||.||.||||||.|||||||.||||||
BPUM_0991___y 1037 CTGTACAAGTCGTCAGAATTATTCTCGTCATTGCCATGCTGCCACCGTTT 1086
BSNT_01795___ 1084 TATCGCCTGCTT-CACCATCTTCATGGTGAAAAA--------------AA 1118
| ||...|.||| ||.|||.| ||||..||||| ||
BPUM_0991___y 1087 T-TCCGGTTCTTACATCATGT--ATGGGCAAAAAGGCATCCTGATTATAA 1133
BSNT_01795___ 1119 AG--ACAAAAAGAGCTCAATCAGCGGCAGTAGTGCCTAG 1155
|| .|||||..|
BPUM_0991___y 1134 AGCCGCAAAATAA-------------------------- 1146
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