Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00675 and BPUM_0985
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:27
# Commandline: needle
# -asequence dna-align/BSNT_00675___yclO.1.24716.seq
# -bsequence dna-align/BPUM_0985___yclO.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00675___yclO-BPUM_0985___yclO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00675___yclO-BPUM_0985___yclO.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00675___yclO
# 2: BPUM_0985___yclO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1039
# Identity: 656/1039 (63.1%)
# Similarity: 656/1039 (63.1%)
# Gaps: 179/1039 (17.2%)
# Score: 2004.5
#
#
#=======================================
BSNT_00675___ 1 ATGCGTAACCAGATGAAA--------ATAGCT--TTGCTCGTTGTTTTAG 40
||||.||| |||| |||.|| |||| ||
BPUM_0985___y 1 ATGCATAA------GAAACGGACATTATACCTGATTGC----------AG 34
BSNT_00675___ 41 CCATTGTA-------TGTATCGGCTTGTTTTTGTTTTATGACTTAGGCAA 83
||||||.| || |||| ||.| |||.||.||.|| .|||
BPUM_0985___y 35 CCATTGCAGCAGTGCTG-ATCG---TGAT----TTTCATTACCTA-TCAA 75
BSNT_00675___ 84 TTGGGAT--------TACACCCTGCCGAGACGAATCAAAAAAGT-----C 120
.||||.| |||||..|.||.||.|||.|.||.||||| |
BPUM_0985___y 76 ATGGGGTACTGGCCGTACACAGTACCAAGTCGATTAAAGAAAGTGCTGGC 125
BSNT_00675___ 121 GCTGCCATTGTGCTGACGGGGGGAGCGATTGCGTTTTCGACCATGATCTT 170
|.||.||| ||||.||.||.||||||||.|||||..|..|..||||
BPUM_0985___y 126 GATGACAT-----TGACAGGAGGCGCGATTGCCTTTTCATCTGTTGTCTT 170
BSNT_00675___ 171 TCAAACGATTACGAACAACCGCATCCTGACGCCGAGCATTTTGGGCCTTG 220
.|||||..|.||.|||||.||.|||.|.|||||||||||..|.||..|.|
BPUM_0985___y 171 CCAAACCTTGACCAACAATCGAATCTTAACGCCGAGCATACTAGGTTTAG 220
BSNT_00675___ 221 ATTCTCTCTACATGCTGATTCAGACTGGCATTATCTTTTTGTTCGGTTCT 270
||.|.||.|||.||.|..|.||.||.|..|||||.|.|.|.||.|||||.
BPUM_0985___y 221 ATGCACTTTACTTGTTTTTGCAAACAGCGATTATTTATCTATTTGGTTCG 270
BSNT_00675___ 271 GCGAATATGGTCATCATGAATAAAAACATCAACTTTATCATCTCTGTTCT 320
.|.|||.|..|.|||.|.|||||||||.|.||.|||.||.|.|.||||..
BPUM_0985___y 271 ACCAATTTCATGATCGTCAATAAAAACCTGAATTTTTTCCTTTGTGTTGG 320
BSNT_00675___ 321 GCTGATGATCCTGTTTTC--TCTTGTTTTGTATCAGATCATGTTCAAGGG 368
|||||||||.||.||||| ||.||.|.|.|| ||| |||||||||
BPUM_0985___y 321 GCTGATGATTCTATTTTCTGTCCTGCTATATA-CAG-TCATGTTCA---- 364
BSNT_00675___ 369 TGAGGGGAGAAAT------ATCTTTTTCCTTCTGCTTATCGGAATCGTGT 412
|..|.|.|||| ||.||.||.|||||||||.|||||||.||||
BPUM_0985___y 365 --AACGCAAAAATAAGCACATTTTCTTGCTTCTGCTTGTCGGAATTGTGT 412
BSNT_00675___ 413 TTGGCACGCTGTTCAGCAGCCTGTCTTCCTTTATGCAGATGCTGATTGAT 462
||||.||..||||||..|||||.|||||.||||||.|.|||||.||||||
BPUM_0985___y 413 TTGGGACATTGTTCAAAAGCCTTTCTTCTTTTATGGAAATGCTAATTGAT 462
BSNT_00675___ 463 CCGAATGAGTTCCAAGTGGTGCAGGACAAGAT-----GTTTGCCAGCTTT 507
||.|||||.|..||.||.|| ||||||| .|||||.||||||
BPUM_0985___y 463 CCAAATGAATATCAGGTCGT-----ACAAGATAAATCCTTTGCGAGCTTT 507
BSNT_00675___ 508 AACAACATCAATACAGATTTGTTATGGCTC---GCGTTC-ATCATCTTCC 553
||..||||.||.||||||.|.||| ||| || ||| ||
BPUM_0985___y 508 AATCACATGAACACAGATATCTTA---CTCATTGC-TTCTAT-------- 545
BSNT_00675___ 554 TGCTGACAGGCGTTTATGTCTGGCG------TTTTACAAAGTTT------ 591
|||||.|.||||| .|||||| |||
BPUM_0985___y 546 ------------TTTATTTGTGGCGCTGTGCCTTTACA---TTTGGACAT 580
BSNT_00675___ 592 -----------TTCGATGTGCTGTCGCTCGGACGCGAGCACGCCGTGAAT 630
||.|||||..||||.||.||....|||||.||.||||||
BPUM_0985___y 581 TCCGCTCCAAATTAGATGTCATGTCACTTGGGAAAGAGCATGCGGTGAAT 630
BSNT_00675___ 631 TTGGGCATTGACTACG--------ACAAAGTGGTGAAGCAGATGCTGATC 672
.|.||.||||||||.| ||||| || |||||||||||
BPUM_0985___y 631 CTAGGGATTGACTATGACAGCATCACAAA------AA--AGATGCTGATC 672
BSNT_00675___ 673 GTGGTTGCGATTTTGGTTTCTGTTTCAACAGCGCTAGTCGGGCCGATTAT 722
|||.||||..|..|.||.|||.|..|||||||.||.|||||.|||||||.
BPUM_0985___y 673 GTGATTGCTGTCCTTGTGTCTATCGCAACAGCACTTGTCGGACCGATTAC 722
BSNT_00675___ 723 GTTTTTAGGCCTTCTGGTCGTCAACCTGGCGAGAGA---ATTCCTGAAAA 769
|||..|.|||.|.||.|||||.||..|.||..|||| .||.|.| |
BPUM_0985___y 723 GTTCCTCGGCTTACTCGTCGTAAATGTTGCACGAGAGCTTTTTCGG---A 769
BSNT_00675___ 770 CATATAAGCATTCATACTTAATCGC----AGGCTCCGTTTTCATCAGCAT 815
|||||..||||.||||||| || .|||||..||||||||||..|
BPUM_0985___y 770 CATATCGGCATACATACTT----GCTACTTGGCTCTTTTTTCATCAGTGT 815
BSNT_00675___ 816 CATTGCGCTGGTCGGAGGGCAGTTTGTGGTTGAGAAAGTGTTTACCTTCT 865
.|||||.||.||.||.||..|||||.|.||.||.||.||.|||| |||.|
BPUM_0985___y 816 GATTGCCCTTGTAGGCGGAGAGTTTCTTGTAGAAAAGGTATTTA-CTTTT 864
BSNT_00675___ 866 C-AACGACGCTGAGCGTCATT-ATTAATTTTGCCGGCGGGATTTATTTTA 913
| ||||.||||.||.|| ||| |||.||||.|.||||||..|.|||||||
BPUM_0985___y 865 CAAACGCCGCTTAGTGT-ATTAATTGATTTAGTCGGCGGACTGTATTTTA 913
BSNT_00675___ 914 TCTACTTGCTGTTAAAGGAGAATAAATCATGGT----AG 948
|.||.||.|||||||||||||.|...||||||| |
BPUM_0985___y 914 TTTATTTACTGTTAAAGGAGAGTCGTTCATGGTCTTGA- 951
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