Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00674 and BPUM_0984

See Amino acid alignment / Visit BSNT_00674 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:27
# Commandline: needle
#    -asequence dna-align/BSNT_00674___yclN.1.24716.seq
#    -bsequence dna-align/BPUM_0984___yclN.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00674___yclN-BPUM_0984___yclN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00674___yclN-BPUM_0984___yclN.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00674___yclN
# 2: BPUM_0984___yclN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 994
# Identity:     676/994 (68.0%)
# Similarity:   676/994 (68.0%)
# Gaps:          86/994 ( 8.7%)
# Score: 2086.0
# 
#
#=======================================

BSNT_00674___      1 ATGAAGCTACGTTACTTA--TTTATTCTACTTATCATATTAGCAGTCACA     48
                     ||||||.|...|.|.|||  |||||  ||.||.| ||.||     |..||
BPUM_0984___y      1 ATGAAGTTGTATCAATTAAGTTTAT--TATTTGT-ATGTT-----TGGCA     42

BSNT_00674___     49 TCTGTA------TTTATCGGTGTAGAAGATCTGTCGCCGCTT--GATCTC     90
                     |.||||      |||.||||||||.|.|||.|||  ||..||  .|.||.
BPUM_0984___y     43 TGTGTATCACTGTTTGTCGGTGTACAGGATGTGT--CCATTTTACAGCTG     90

BSNT_00674___     91 TTCGATTTAAGCA----AACAAGAGGCGTCA-ACGTT-GTTTGCAAGCCG    134
                     ||..|||||| ||    ||||||.|    || ||||| |||| ||||.||
BPUM_0984___y     91 TTTCATTTAA-CAGATGAACAAGTG----CATACGTTAGTTT-CAAGTCG    134

BSNT_00674___    135 TTTGCCGCGATTGATCAGCATTGTCATCGCGGGATTAAGCATGAGCATCT    184
                     ..|.|||||..|.||.||.|||||..|.||.||..|.|||.|.||..|.|
BPUM_0984___y    135 CATCCCGCGTCTCATGAGTATTGTGCTTGCTGGCATGAGCCTTAGTTTAT    184

BSNT_00674___    185 GCGGTTTGATTATGCAGCAG-ATCAGCAGAAACAAATTCGTGTCACCGAC    233
                     ||||.||.|||||||| .|| ||.|..||.||.|||||.||.||.||.||
BPUM_0984___y    185 GCGGCTTTATTATGCA-AAGTATGACGAGGAATAAATTTGTTTCCCCCAC    233

BSNT_00674___    234 GACGGCGGGCACGATGGATTGGGCGAGGCTCGGCATTTTAATTTCCTTGC    283
                     .||.||.||.||||||||||||||||.|||.||.||||||.|..|..|||
BPUM_0984___y    234 CACTGCAGGAACGATGGATTGGGCGAAGCTTGGTATTTTAGTCGCAATGC    283

BSNT_00674___    284 TGCTGTTTACATCCGCCAGTCCTTTAATCAAAATGCTGG--TCGCGTTTG    331
                     |..|.|||||....||.||.||..|.||.||||||  ||  ||||||||.
BPUM_0984___y    284 TTGTTTTTACGCAGGCGAGCCCGCTCATGAAAATG--GGCATCGCGTTTC    331

BSNT_00674___    332 TCTTTGCCCTTGCAGGAAATTTTCTGTTTATGAAAATCCT------TGAA    375
                     |.|||.|..|.||.||.||..||||.||..|.|||||.||      |   
BPUM_0984___y    332 TATTTACTTTAGCTGGGAACCTTCTTTTCTTAAAAATTCTGCGGCAT---    378

BSNT_00674___    376 AGAATCAAGTTTAACGACACCATCTTTATTCCGCTTGTCGGTTTAATGCT    425
                        ||.|||.|.|||||.||.||||.|.|.|||.|.|||||.||||||.|
BPUM_0984___y    379 ---ATTAAGGTGAACGATACGATCTATGTACCGTTAGTCGGCTTAATGTT    425

BSNT_00674___    426 ---CGGGAATATCGTCAGTTCAATCGCGACATTTATCGCATATAAATATG    472
                        ||||   ||.||.||||||||..|.||.|||||.||.||||||||||
BPUM_0984___y    426 TGGCGGG---ATTGTTAGTTCAATATCTACGTTTATAGCCTATAAATATG    472

BSNT_00674___    473 ACTTGATCCAGAATGTGTCATCATGGCTGCAGGGAGACTTCTCT-TTAGT    521
                     |..|||||||.||.||.||...||||||.||.||.||.||.||| ||| |
BPUM_0984___y    473 ATCTGATCCAAAACGTATCCGTATGGCTTCAAGGGGATTTTTCTCTTA-T    521

BSNT_00674___    522 CGTGAAAGGAAGATACGAGCTTCTTTATCTGAGTATTCCGCTCGTCATCA    571
                     .||..|.|||.|.||.||.||.||.|||||||||.||||.||..|.||||
BPUM_0984___y    522 TGTTCAGGGACGTTATGAACTGCTCTATCTGAGTGTTCCACTATTGATCA    571

BSNT_00674___    572 TTGCCTATGTGTATGCGGATAAATTCACATTGGCCGGTATGGGTGAAAGC    621
                     ||||.|||.|.|||||.||....||.|||.|.||.||||||||.||.|||
BPUM_0984___y    572 TTGCGTATTTATATGCTGACCGCTTTACAGTAGCAGGTATGGGCGAGAGC    621

BSNT_00674___    622 TTTTCTGTCAACCTCGGCCTGAAGTACAAACGGGTTGTGAACATCG-GGC    670
                     |||.||||.|||.|.||..|.|.|||.|||||   ||||   ||.| ||.
BPUM_0984___y    622 TTTGCTGTTAACTTAGGTTTAACGTATAAACG---TGTG---ATGGCGGT    665

BSNT_00674___    671 TCATT-----ATCGTGTCCCTGATCACGTCCCTTGT---CATTTTGACTG    712
                     |..||     ||.||.||..||||.||.||   |||   |||.||.||||
BPUM_0984___y    666 TGGTTTGGTGATTGTTTCGATGATTACATC---TGTCACCATATTAACTG    712

BSNT_00674___    713 TCGGTATGCTGCCGTTTCTCGGTTTAATCATCCCGAATATTGTATCGATT    762
                     ||||.||||||||.||.||.||.||||||||.|||||||||||||||||.
BPUM_0984___y    713 TCGGAATGCTGCCATTCCTAGGCTTAATCATTCCGAATATTGTATCGATC    762

BSNT_00674___    763 TACAGAGGAGA-CAATCTGAAGAGCAGCCTGCCGCATACTGCGCTGTTGG    811
                     |||.|.||.|| ||.| ||||.|..|||||.||||||||.||..|..|.|
BPUM_0984___y    763 TACCGCGGCGATCACT-TGAAAAAGAGCCTTCCGCATACAGCCTTACTAG    811

BSNT_00674___    812 GAGCGGTGTTTGTGCTGTTTTGCGATATACTGGGCAG---AATCA-TTAT    857
                     ||||..|.|||||.|||.||||.|||.|.||.||.||   .|||| ||||
BPUM_0984___y    812 GAGCCATTTTTGTTCTGATTTGTGATGTGCTCGGAAGGGTGATCATTTAT    861

BSNT_00674___    858 CTTCCCTTATGAAATCTCGATTGGCCTGATGGTCGGAATCATCGGCAGCG    907
                         ||.||||||||.||..||||.||.||||||||.||||||||.||.|
BPUM_0984___y    862 ----CCATATGAAATTTCAGTTGGGCTTATGGTCGGCATCATCGGGAGTG    907

BSNT_00674___    908 GCATTTTCCTGTTTATGCTGTTAAGGAGAAAAGCCTATGCGTAA    951
                     ..||.|||||||..|||.|.||||||||.|||..||||||.|||
BPUM_0984___y    908 CGATCTTCCTGTACATGTTATTAAGGAGGAAACGCTATGCATAA    951


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