Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00674 and BPUM_0984
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:27
# Commandline: needle
# -asequence dna-align/BSNT_00674___yclN.1.24716.seq
# -bsequence dna-align/BPUM_0984___yclN.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00674___yclN-BPUM_0984___yclN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00674___yclN-BPUM_0984___yclN.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00674___yclN
# 2: BPUM_0984___yclN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 994
# Identity: 676/994 (68.0%)
# Similarity: 676/994 (68.0%)
# Gaps: 86/994 ( 8.7%)
# Score: 2086.0
#
#
#=======================================
BSNT_00674___ 1 ATGAAGCTACGTTACTTA--TTTATTCTACTTATCATATTAGCAGTCACA 48
||||||.|...|.|.||| ||||| ||.||.| ||.|| |..||
BPUM_0984___y 1 ATGAAGTTGTATCAATTAAGTTTAT--TATTTGT-ATGTT-----TGGCA 42
BSNT_00674___ 49 TCTGTA------TTTATCGGTGTAGAAGATCTGTCGCCGCTT--GATCTC 90
|.|||| |||.||||||||.|.|||.||| ||..|| .|.||.
BPUM_0984___y 43 TGTGTATCACTGTTTGTCGGTGTACAGGATGTGT--CCATTTTACAGCTG 90
BSNT_00674___ 91 TTCGATTTAAGCA----AACAAGAGGCGTCA-ACGTT-GTTTGCAAGCCG 134
||..|||||| || ||||||.| || ||||| |||| ||||.||
BPUM_0984___y 91 TTTCATTTAA-CAGATGAACAAGTG----CATACGTTAGTTT-CAAGTCG 134
BSNT_00674___ 135 TTTGCCGCGATTGATCAGCATTGTCATCGCGGGATTAAGCATGAGCATCT 184
..|.|||||..|.||.||.|||||..|.||.||..|.|||.|.||..|.|
BPUM_0984___y 135 CATCCCGCGTCTCATGAGTATTGTGCTTGCTGGCATGAGCCTTAGTTTAT 184
BSNT_00674___ 185 GCGGTTTGATTATGCAGCAG-ATCAGCAGAAACAAATTCGTGTCACCGAC 233
||||.||.|||||||| .|| ||.|..||.||.|||||.||.||.||.||
BPUM_0984___y 185 GCGGCTTTATTATGCA-AAGTATGACGAGGAATAAATTTGTTTCCCCCAC 233
BSNT_00674___ 234 GACGGCGGGCACGATGGATTGGGCGAGGCTCGGCATTTTAATTTCCTTGC 283
.||.||.||.||||||||||||||||.|||.||.||||||.|..|..|||
BPUM_0984___y 234 CACTGCAGGAACGATGGATTGGGCGAAGCTTGGTATTTTAGTCGCAATGC 283
BSNT_00674___ 284 TGCTGTTTACATCCGCCAGTCCTTTAATCAAAATGCTGG--TCGCGTTTG 331
|..|.|||||....||.||.||..|.||.|||||| || ||||||||.
BPUM_0984___y 284 TTGTTTTTACGCAGGCGAGCCCGCTCATGAAAATG--GGCATCGCGTTTC 331
BSNT_00674___ 332 TCTTTGCCCTTGCAGGAAATTTTCTGTTTATGAAAATCCT------TGAA 375
|.|||.|..|.||.||.||..||||.||..|.|||||.|| |
BPUM_0984___y 332 TATTTACTTTAGCTGGGAACCTTCTTTTCTTAAAAATTCTGCGGCAT--- 378
BSNT_00674___ 376 AGAATCAAGTTTAACGACACCATCTTTATTCCGCTTGTCGGTTTAATGCT 425
||.|||.|.|||||.||.||||.|.|.|||.|.|||||.||||||.|
BPUM_0984___y 379 ---ATTAAGGTGAACGATACGATCTATGTACCGTTAGTCGGCTTAATGTT 425
BSNT_00674___ 426 ---CGGGAATATCGTCAGTTCAATCGCGACATTTATCGCATATAAATATG 472
|||| ||.||.||||||||..|.||.|||||.||.||||||||||
BPUM_0984___y 426 TGGCGGG---ATTGTTAGTTCAATATCTACGTTTATAGCCTATAAATATG 472
BSNT_00674___ 473 ACTTGATCCAGAATGTGTCATCATGGCTGCAGGGAGACTTCTCT-TTAGT 521
|..|||||||.||.||.||...||||||.||.||.||.||.||| ||| |
BPUM_0984___y 473 ATCTGATCCAAAACGTATCCGTATGGCTTCAAGGGGATTTTTCTCTTA-T 521
BSNT_00674___ 522 CGTGAAAGGAAGATACGAGCTTCTTTATCTGAGTATTCCGCTCGTCATCA 571
.||..|.|||.|.||.||.||.||.|||||||||.||||.||..|.||||
BPUM_0984___y 522 TGTTCAGGGACGTTATGAACTGCTCTATCTGAGTGTTCCACTATTGATCA 571
BSNT_00674___ 572 TTGCCTATGTGTATGCGGATAAATTCACATTGGCCGGTATGGGTGAAAGC 621
||||.|||.|.|||||.||....||.|||.|.||.||||||||.||.|||
BPUM_0984___y 572 TTGCGTATTTATATGCTGACCGCTTTACAGTAGCAGGTATGGGCGAGAGC 621
BSNT_00674___ 622 TTTTCTGTCAACCTCGGCCTGAAGTACAAACGGGTTGTGAACATCG-GGC 670
|||.||||.|||.|.||..|.|.|||.||||| |||| ||.| ||.
BPUM_0984___y 622 TTTGCTGTTAACTTAGGTTTAACGTATAAACG---TGTG---ATGGCGGT 665
BSNT_00674___ 671 TCATT-----ATCGTGTCCCTGATCACGTCCCTTGT---CATTTTGACTG 712
|..|| ||.||.||..||||.||.|| ||| |||.||.||||
BPUM_0984___y 666 TGGTTTGGTGATTGTTTCGATGATTACATC---TGTCACCATATTAACTG 712
BSNT_00674___ 713 TCGGTATGCTGCCGTTTCTCGGTTTAATCATCCCGAATATTGTATCGATT 762
||||.||||||||.||.||.||.||||||||.|||||||||||||||||.
BPUM_0984___y 713 TCGGAATGCTGCCATTCCTAGGCTTAATCATTCCGAATATTGTATCGATC 762
BSNT_00674___ 763 TACAGAGGAGA-CAATCTGAAGAGCAGCCTGCCGCATACTGCGCTGTTGG 811
|||.|.||.|| ||.| ||||.|..|||||.||||||||.||..|..|.|
BPUM_0984___y 763 TACCGCGGCGATCACT-TGAAAAAGAGCCTTCCGCATACAGCCTTACTAG 811
BSNT_00674___ 812 GAGCGGTGTTTGTGCTGTTTTGCGATATACTGGGCAG---AATCA-TTAT 857
||||..|.|||||.|||.||||.|||.|.||.||.|| .|||| ||||
BPUM_0984___y 812 GAGCCATTTTTGTTCTGATTTGTGATGTGCTCGGAAGGGTGATCATTTAT 861
BSNT_00674___ 858 CTTCCCTTATGAAATCTCGATTGGCCTGATGGTCGGAATCATCGGCAGCG 907
||.||||||||.||..||||.||.||||||||.||||||||.||.|
BPUM_0984___y 862 ----CCATATGAAATTTCAGTTGGGCTTATGGTCGGCATCATCGGGAGTG 907
BSNT_00674___ 908 GCATTTTCCTGTTTATGCTGTTAAGGAGAAAAGCCTATGCGTAA 951
..||.|||||||..|||.|.||||||||.|||..||||||.|||
BPUM_0984___y 908 CGATCTTCCTGTACATGTTATTAAGGAGGAAACGCTATGCATAA 951
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