Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01765 and BPUM_0976

See Amino acid alignment / Visit BSNT_01765 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:16
# Commandline: needle
#    -asequence dna-align/BSNT_01765___yhxC.1.24716.seq
#    -bsequence dna-align/BPUM_0976___yhxC.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01765___yhxC-BPUM_0976___yhxC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01765___yhxC-BPUM_0976___yhxC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01765___yhxC
# 2: BPUM_0976___yhxC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 887
# Identity:     615/887 (69.3%)
# Similarity:   615/887 (69.3%)
# Gaps:          55/887 ( 6.2%)
# Score: 2039.5
# 
#
#=======================================

BSNT_01765___      1 TTGGCGAATCAAAAA--------AAGAAAACATTACCGCCTCAGCAACAG     42
                          |..||||.||        |||||||||||.|||||||||||.||.
BPUM_0976___y      1 -----GTGTCAACAAAGCAGCCGAAGAAAACATTGCCGCCTCAGCATCAA     45

BSNT_01765___     43 AACCAGCAGCCTGGTTTTGAATATCTTATGGACCCGCGTCCGGTTTTTGA     92
                     |...|||..||.|||.||||||||...|||.|.||..|.||.||||||||
BPUM_0976___y     46 AGTGAGCGTCCAGGTCTTGAATATAAAATGAATCCAAGGCCTGTTTTTGA     95

BSNT_01765___     93 TAAGCCGA-AGAAAGCG---AAAAAATTAGAGGGCAAAACCGCTATTATT    138
                     |    ||| |||...||   |||||.||||..||.|||||.||.||..|.
BPUM_0976___y     96 T----CGAGAGATGCCGGATAAAAAGTTAGCAGGAAAAACAGCCATAGTG    141

BSNT_01765___    139 ACTGGAGGAGACAGCGGGATTGGACGCGCTGTCTCGGTGTTATTCGCAAA    188
                     ||.||.||||||||||||||||||.|.|||||.|||||.|||||.||.||
BPUM_0976___y    142 ACAGGGGGAGACAGCGGGATTGGAAGAGCTGTGTCGGTTTTATTTGCGAA    191

BSNT_01765___    189 AGAAGGGGCTAATGTGGTCATTGTTTATTTGAATGAACATCAGGACGCCG    238
                     .|||||.||.|||||.|.|||||||||.||||.|||.||.|..||.||.|
BPUM_0976___y    192 GGAAGGCGCCAATGTCGCCATTGTTTACTTGAGTGAGCACCGCGATGCAG    241

BSNT_01765___    239 AGGAAACAAAGCAGTATGTAGAAAAGGAAGG-GGTAAAATGCCTGCTGAT    287
                     |||||||.|||.|.|||.|.||||.||..|| ||..||.| |.|..|.||
BPUM_0976___y    242 AGGAAACGAAGGACTATATTGAAAGGGCGGGAGGCCAAGT-CATTTTAAT    290

BSNT_01765___    288 TGCAGGAGATGTCGGGGATGAAGCGTTTTGCAATGATGTGGTCGGGCAGG    337
                     ..||||.|||.|.||.|||||.||.||||..|||||.||.|||....|..
BPUM_0976___y    291 ATCAGGTGATTTAGGAGATGAGGCATTTTCAAATGAGGTTGTCAAAAAAA    340

BSNT_01765___    338 CAAGCCAAG-TGTTTCC--ATCCATTGATATATTGGTTAACAATGCAGCT    384
                     |||   ||| ||.||.|  .|||||||||||.|||||.||||||||.|..
BPUM_0976___y    341 CAA---AAGATGCTTTCGGTTCCATTGATATTTTGGTGAACAATGCCGGG    387

BSNT_01765___    385 GAGCAGCATGTCCAGCCCA---GCATTGAAAAAATCACCAGCCACCAGCT    431
                     ||.||||||   |.||..|   ||||||||.|.||.|||...||.|||||
BPUM_0976___y    388 GAACAGCAT---CCGCAAAAAGGCATTGAACAGATTACCTCACATCAGCT    434

BSNT_01765___    432 GATCAGAACCTTCCAAACAAACATTTTTTCTATGTTTTACTTAACAAAGG    481
                     ..|..||||.||.|||||.||.||||||.|.||||||||.||||||||.|
BPUM_0976___y    435 TCTTCGAACATTTCAAACGAATATTTTTGCCATGTTTTATTTAACAAAAG    484

BSNT_01765___    482 CAGTGCTGCCTCATTTAAAAAAAGGGAGCTCTATTATTAATACCGCTTCA    531
                     |.||.||.||||||||.||.|||||.||...|||.|||||||||||.||.
BPUM_0976___y    485 CGGTACTTCCTCATTTGAAGAAAGGAAGTAGTATCATTAATACCGCATCT    534

BSNT_01765___    532 ATTACCGCCTATAAAGGCAATAAAACGCTGATCGATTATTCAGCGACAAA    581
                     .|.||.|||||.|||||..||.||||..|||||||.||||||.|.|||||
BPUM_0976___y    535 GTCACAGCCTACAAAGGGCATGAAACCTTGATCGACTATTCATCTACAAA    584

BSNT_01765___    582 AGGCGCGATCGTTACGTTTACAAGGTC----CCTTTCCCAGTCGCTTGTT    627
                     |||.||..||||.||.|||||.||.||    .||||    .|||||..||
BPUM_0976___y    585 AGGGGCAGTCGTGACATTTACGAGATCATTATCTTT----ATCGCTCATT    630

BSNT_01765___    628 CAGCAGGGCATACGGGTCAATGCAGTGGCACCGGGTCCCATTTGGACACC    677
                     .|.|||||.||..|.||.||||..||.|||||.||.||||||||||||||
BPUM_0976___y    631 AAACAGGGAATCAGAGTAAATGGGGTAGCACCAGGCCCCATTTGGACACC    680

BSNT_01765___    678 GCTTATCCCGGCCAGCTTTGCCGCAAAAGACGTGGAAGT------GTTTG    721
                     ||||||.|||.|.|.||||.|.|.|||      ||||||      .||||
BPUM_0976___y    681 GCTTATTCCGTCGACCTTTACGGAAAA------GGAAGTCTCTGAATTTG    724

BSNT_01765___    722 GTTCAGACGTGCCGATGGAACGCCCGGGACAGCCGGTCGAAGTGGCGCCA    771
                     |...|||.||.||.|||||.||.||.||..||||.||.||..|.|||||.
BPUM_0976___y    725 GCGGAGATGTTCCAATGGAGCGTCCTGGTGAGCCAGTAGAGCTTGCGCCG    774

BSNT_01765___    772 AGCTATCTATACCTTGCCAGCGACGATTCCACATACGTCACAGGGCAGAC    821
                     ||.|||.|||...|.||.|||||.||.|||.|.||..|.|..||.||.|.
BPUM_0976___y    775 AGTTATTTATTTTTAGCGAGCGAAGACTCCTCTTATATAAATGGACAAAT    824

BSNT_01765___    822 GATTCACGTCAATGGCGGAACAATTGTGAACGGATAA    858
                     |.||||.||.|||||||||||.|||.|.||.||||||
BPUM_0976___y    825 GCTTCATGTAAATGGCGGAACCATTTTAAATGGATAA    861


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_01765 and BPUM_0976

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
