Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01761 and BPUM_0974
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:16
# Commandline: needle
# -asequence dna-align/BSNT_01761___hemAT.1.24716.seq
# -bsequence dna-align/BPUM_0974.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01761___hemAT-BPUM_0974.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01761___hemAT-BPUM_0974.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01761___hemAT
# 2: BPUM_0974
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1388
# Identity: 912/1388 (65.7%)
# Similarity: 912/1388 (65.7%)
# Gaps: 181/1388 (13.0%)
# Score: 2634.0
#
#
#=======================================
BSNT_01761___ 1 TTGTTATTTAAAAAAGACA-GAAAACAAGAAACA--GCTTACTTTTCAGA 47
|||||||||||||||||.| |||||.||.||||| |||| ||||||
BPUM_0974 1 TTGTTATTTAAAAAAGAGACGAAAAGAAAAAACACTGCTT--TTTTCA-- 46
BSNT_01761___ 48 TTCAAACGGACAGCA------AAAAAACCGCATTCAGCTCACAA------ 85
|||| .|||.| ||.|||.||.|| |||
BPUM_0974 47 --CAAA---GCAGGATGATGGAATAAAACGTAT--------CAATTTTTC 83
BSNT_01761___ 86 --ACAAACATGCAGATGTCAAAAAACAGCTCAAAATGGTCAGGCTG--GG 131
||| ||.|.|||.||...|||||..||||||||.|....||| |.
BPUM_0974 84 TGACA---ATACGGATATCGCGAAACAAATCAAAATGATTGACCTGACGC 130
BSNT_01761___ 132 AG-ATG-CTGAGCTTTACGTGTTAGAGCAGC----TTCAGCCACTGATTC 175
|| ||| ||.| ||.| |..||.|.|||| |||| |.|| |||
BPUM_0974 131 AGAATGACTTA--TTGA--TTCTAAATCAGCTCAATTCA---ATTG-TTC 172
BSNT_01761___ 176 AAGAAAATATCGTATACATCGTCGATGCGTTTTATAAAAATCTTGACCAT 225
|.|||.||||.|.|.|.|||||.|||...||||||||||||.|.|
BPUM_0974 173 AGGAAGATATTGCACATATCGTTGATAAATTTTATAAAAATTTAG----- 217
BSNT_01761___ 226 GAAAG-------CTCATTGATGGATATCATTAATGATCACAGCTCAGTTG 268
||| .||.||||||.||||||||.|.|||.|.||.||.||.|
BPUM_0974 218 --AAGTCGAGTCTTCTTTGATGCATATCATTCAAGATAATAGTTCTGTCG 265
BSNT_01761___ 269 ACCG-CTTAAAACAA-ACGTTAAAACGGCATATTCAG-GAAATGTTTGCA 315
|.|| ||.||||.|| ||.|...|.| |||||| || ||||||||||||
BPUM_0974 266 AGCGTCTGAAAAAAACACTTCGCATC--CATATT-AGTGAAATGTTTGCA 312
BSNT_01761___ 316 GGTGTTATCGATGATGAATTCATTG----AAAAGCGAAACCGAATCGCCT 361
|||| |.|.|||||||..|..|| |||| ||||....|||.||
BPUM_0974 313 GGTG---TGGTTGATGAAGCCTATGTGGCAAAA-CGAATTAAAATTGC-- 356
BSNT_01761___ 362 CCA--TCCATTTAAGAATCGGCCTTCTGCCAAAATGGTATATGGGCGCAT 409
.|| |.|||.|..|.||.|||||.|.|||.||.||||||||||.|||||
BPUM_0974 357 ACAAGTTCATCTGCGGATTGGCCTCCAGCCTAAGTGGTATATGGCCGCAT 406
BSNT_01761___ 410 TTCAAGAACTCATTTTGTCAATGATTGAC--ATTTATGAAGCGTC--CAT 455
|.||.||.||..|..|.||.||.||.||| |||| || || |||
BPUM_0974 407 TCCAGGATCTTCTGCTATCGATTATGGACTTATTT-----GC-TCAGCAT 450
BSNT_01761___ 456 TACAAA----TCAGCAAGAACTGCTA----AAAGCCATTAAAGCAACAAC 497
..|.|| ||| ||||| || |.|||..|.|||||.||.||
BPUM_0974 451 ATCCAAGACTTCA--AAGAA----TATCAGACAGCAGTGAAAGCGACGAC 494
BSNT_01761___ 498 AAAAATCTTGAACTTAGAACAGCAGCTTGTCCTTGAAGCGTTTCAAAGCG 547
.|||||.||.||.|||||.|||||||||||..|.||..|.||.||||..|
BPUM_0974 495 GAAAATTTTAAATTTAGAGCAGCAGCTTGTTTTGGATACATTCCAAAATG 544
BSNT_01761___ 548 AGTA--CAACCAGACCCGTGATGAACAAGAAGAAAAGAAAAACCTTCTTC 595
|.|| |.| |.|..|||||||||..||||....||.||.|....||||
BPUM_0974 545 AATATTCTA--AAATTCGTGATGAAGCAGAACTGCAGCAACAGGAGCTTC 592
BSNT_01761___ 596 ATCAGAAAATTCA-AGAAACCTCTGGATCGATTGCCAATCTGTTTTCAGA 644
|| |.||||.||| ||||||.||....|||.||||....||.||.|||.|
BPUM_0974 593 AT-ACAAAAATCACAGAAACATCAAACTCGCTTGCTTCGCTCTTCTCAAA 641
BSNT_01761___ 645 AACAAGCAGAT-CAGTTCAAGAGCTTGTGGACAAATCTG-----AAGGC- 687
.|||| ||.|| |.||..|..|||||||....||||||| |.|||
BPUM_0974 642 CACAA-CAAATGCTGTGGACAAGCTTGTATCAAAATCTGATGAAATGGCA 690
BSNT_01761___ 688 -ATTTCTCAAGCATCCAAAGCCGGCACTGTAACA---TCCAGCAC-TGTT 732
||.|.|| || ||||.||||| ||| |.|||||| .||.
BPUM_0974 691 GATATGTC--GC-----AAGCTGGCAC----ACAAATTTCAGCACAAGTC 729
BSNT_01761___ 733 GAAGAAAAGTCGATCGGCGGAAAAAAAGAGCTAGAAGTCCAGCAAAAACA 782
||.|||||.||||||||.||.||||||||..||||..|.||.||||..||
BPUM_0974 730 GAGGAAAAATCGATCGGTGGTAAAAAAGAATTAGAGATTCAACAAACTCA 779
BSNT_01761___ 783 GATGAACAAAATTGA---CA-CAAGCCTTGTCCAA-ATCGAAAAAGAAAT 827
.||||||.||||||| || || ||.|.|| ||.||||.|||||
BPUM_0974 780 AATGAACCAAATTGATGGCAGCA-----TGACAAAGATTGAAACAGAAA- 823
BSNT_01761___ 828 GGTCAAGC---TGGATGAAATCGCGCAGCAAATTGAAAAAATCTTCGGCA 874
|.|||| |.||.||||||||..|.||.||||||.|||||||.||.|
BPUM_0974 824 --TTAAGCGTTTAGAAGAAATCGCCAAACAGATTGAACAAATCTTTGGGA 871
BSNT_01761___ 875 TCGTCACAGGCATAGCTGAACAAACAAACCTTCTCTCGCTCAATGCATCT 924
|.|||||||||||.||.|||||.||.||..|..|.||..|.||.||.||.
BPUM_0974 872 TTGTCACAGGCATTGCAGAACAGACGAATTTATTATCTTTAAACGCGTCA 921
BSNT_01761___ 925 ATTGAATCCGCCCGCGCCGGAGAACACGGCAAAGGCTTTGCTGTCGTGGC 974
||.|||||.||.||.||.||.||||||||.|||||||||||||||||.||
BPUM_0974 922 ATCGAATCTGCACGAGCAGGTGAACACGGAAAAGGCTTTGCTGTCGTCGC 971
BSNT_01761___ 975 AAATGAAGTGCGGAAGCTTTCTGAGGATACGAAAAAAACCGTCTCTACTG 1024
||||||.||.||.||..|.||.|||||.||.||.|||||.||.||.||.|
BPUM_0974 972 AAATGAGGTTCGTAAATTATCAGAGGACACAAAGAAAACGGTTTCAACCG 1021
BSNT_01761___ 1025 TTTCTGAGCTTGTGAACAATACGAATACACAAATCAACATTGTATCCAAG 1074
|.|||||.||.||.||||||||.|||.||||||||..||||||.||..||
BPUM_0974 1022 TGTCTGAACTCGTCAACAATACCAATTCACAAATCTCCATTGTGTCTCAG 1071
BSNT_01761___ 1075 CATATCAAAGACGTGAATGAGCTAGTCAGCGAAAGTAAAGAAAAAATGAC 1124
||.||....|||||||||...||.||.|..||.|||||||||||||||||
BPUM_0974 1072 CACATTGGGGACGTGAATTTACTTGTGACAGATAGTAAAGAAAAAATGAC 1121
BSNT_01761___ 1125 GCAAATTAA-CCGCTTATTCGATGAAATCGTCCACAGCATGAAAATCAGC 1173
.|||||.|| .||| |.||||||||.||||||..|||||||||..|.|||
BPUM_0974 1122 CCAAATCAATTCGC-TCTTCGATGATATCGTCAGCAGCATGAACTTAAGC 1170
BSNT_01761___ 1174 AAAGAGCAATCA----GGCAAAATCGACGTCGATCTGCAAGCCTTTCTTG 1219
||| ||||| ||.|||||.||..|.||.||.|||.|| |||.||
BPUM_0974 1171 AAA----AATCAAAATGGAAAAATTGAAATAGACCTTCAAACC-TTCCTG 1215
BSNT_01761___ 1220 GAGGGCTT-CAGGAAGTCAGCCGCGCCGTTTCCCATGTGGCC-GCTTCCG 1267
.|.|..|| .|||||||||..|...|.||.|||||.||.||| || ||.|
BPUM_0974 1216 AACGAATTGAAGGAAGTCAAACAAACGGTCTCCCAAGTTGCCAGC-TCAG 1264
BSNT_01761___ 1268 TTGATTCGCTTGTC--ATCCTGACAGAAGAA----TAA 1299
|.||.|| |||..| || ||.||| || |||
BPUM_0974 1265 TCGAATC-CTTAACAAAT-CTCACA----AATCGCTAA 1296
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