Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01745 and BPUM_0971
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:15
# Commandline: needle
# -asequence dna-align/BSNT_01745___yhfN.1.24716.seq
# -bsequence dna-align/BPUM_0971___yhfN.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01745___yhfN-BPUM_0971___yhfN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01745___yhfN-BPUM_0971___yhfN.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01745___yhfN
# 2: BPUM_0971___yhfN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1396
# Identity: 870/1396 (62.3%)
# Similarity: 870/1396 (62.3%)
# Gaps: 230/1396 (16.5%)
# Score: 2341.5
#
#
#=======================================
BSNT_01745___ 1 ------ATGCGCAAGTGGATTGC---GGCAGCAGGACTTGCTTACGTGCT 41
.|.||.||.|||.|.|| .|||.|.| |.||.|||.|..|
BPUM_0971___y 1 GTGCGAGTACGTAAATGGGTAGCTCTTGCAACGG---TAGCATACATATT 47
BSNT_01745___ 42 GTACGGGCTGTTTTTTTATTGGTATTTTTTCCTGTCGGGTGATTCCGCAA 91
||||||.||.|||.||||||..|||||.||.||.|..||.|||.|..|..
BPUM_0971___y 48 GTACGGTCTTTTTATTTATTCTTATTTGTTTCTATTTGGGGATGCATCGG 97
BSNT_01745___ 92 TACCGGAAGCCGTG--AAAGGGACGCAG-GCTGATCCGGCTTCTTTCATG 138
|.||.|| |.||| |||||.|| .|| ||.||||||..|.|.||.|||
BPUM_0971___y 98 TTCCTGA--CAGTGTAAAAGGAAC-AAGTGCAGATCCGCATACCTTTATG 144
BSNT_01745___ 139 --AAGCCGTCTGAG-TTGGCAGTGGCCGAGCAGTATTCGAATGTCAAG-A 184
||||| .|||| |||.|| |...||||||.|..|||||..| |.| |
BPUM_0971___y 145 ACAAGCC--ATGAGCTTGTCA-TCAGCGAGCATTTCTCGAACAT-ACGTA 190
BSNT_01745___ 185 ATTTTTTATTTTTTATCGGGGTAC----CACTT-GATTGGTTTCTGTTTT 229
|.||..|.|||||.|| .|| |.||| |||||||.|.|.||||
BPUM_0971___y 191 ACTTGCTGTTTTTCAT-----GACAATTCCCTTAGATTGGTATGTCTTTT 235
BSNT_01745___ 230 TTGTTCTGCT--TGTCAGCGGTGTTTCAAAGAAAATCA--AGAAATGGAT 275
||.||||||| |.|||| ||| |||| |.||||||.| || |.||||.
BPUM_0971___y 236 TTCTTCTGCTCATTTCAG-GGT-TTTC-ACGAAAATTAGCAG-ACTGGAG 281
BSNT_01745___ 276 C--GA-AGCGGC-CGTGCCTTTTCGGTTTTT--GCAGACCGTTGGTTTTG 319
| || |||.|| || |||..| .||||| |||.|| |||..|..|
BPUM_0971___y 282 CCTGACAGCAGCTCG---CTTCAC-ATTTTTAAGCAAAC--TTGTATACG 325
BSNT_01745___ 320 TGTTTGTGCTTTCGCTGATT----ACAACATTGGTGA---CGCTGCCT-T 361
||||||||||.|| ||| |||| ||.||| |.||.||| |
BPUM_0971___y 326 TGTTTGTGCTGTC----ATTTTTGACAA---TGCTGATTTCACTTCCTAT 368
BSNT_01745___ 362 TAGATTGGATAGGCTATCAAGTATCGCTTG-ACTA-----TAACATTTCC 405
|| |.|||||.||||||||..|.|| .||| |||| || ||.
BPUM_0971___y 369 TA-AATGGATTGGCTATCAGCTGTC-TTTGCACTACGGAGTA-----TCT 411
BSNT_01745___ 406 ACACAGACAACGGCCAGCTGGGCTAAGGATCAGGTTATCAGCTTT-TGGA 454
.|.||.|..|||||.||||||...||.|||||..||.| ||.||| ||||
BPUM_0971___y 412 GCTCAAAGTACGGCAAGCTGGTTGAAAGATCAAATTCT-AGATTTCTGGA 460
BSNT_01745___ 455 TCAGCTTTCCA-ATCTTTACGCT--TTGC-----GTTC--TCGTTTTTTA 494
|||.| ||| |||| |||| ||.| |.||.||.|.
BPUM_0971___y 461 ------TTCAATATC----CGCTTCTTGCCCTATGTGCAATTGTATTCTT 500
BSNT_01745___ 495 TTGGCTGA-TCAAAAGGCATGAAAAAAA--ATGGTGGTTATACGCCTGGC 541
||||||.| |||||| |.|||.|||| .||||||.|.||.||.|||
BPUM_0971___y 501 TTGGCTTATTCAAAA---AAGAAGAAAACGCTGGTGGCTGTATGCTTGG- 546
BSNT_01745___ 542 TGT-TAACAGTGCCGTTTTCGCTGTTTCTGTTTTTTATTCAGCCGGTCAT 590
||| |.|||||.||.||..|.||.|||||.||.|||||.|||||||||.|
BPUM_0971___y 547 TGTCTGACAGTCCCATTGACACTATTTCTCTTCTTTATACAGCCGGTCGT 596
BSNT_01745___ 591 TATCGATCCTTTATACAATGATTTTTATCCGCTGAAAAACAAAGAGCTTG 640
.||.|||||.|||||.|||.||||||||||.||.||..|..|||..||||
BPUM_0971___y 597 CATTGATCCGTTATATAATCATTTTTATCCACTAAAGGATCAAGCTCTTG 646
BSNT_01745___ 641 AAAGCAAAATTTTAGAGCTGGCAGATGAAGCCAATATTCCGGCTGACCAT 690
|.|.|||.||.|||...||.|||||..||||..||||.||.||.||.|||
BPUM_0971___y 647 AGAACAAGATCTTAACACTTGCAGACAAAGCTCATATCCCAGCGGATCAT 696
BSNT_01745___ 691 GTATATGAAGTGAACATGTCAGAAAAAACAAATGCGCTGAATGCCTATGT 740
||||||||.||.||.|||||.||||||||.||..||.|||||||.|||||
BPUM_0971___y 697 GTATATGAGGTCAATATGTCTGAAAAAACGAACACGATGAATGCTTATGT 746
BSNT_01745___ 741 TACAGGAATTGGGGCCAATAAACGGATTGTATTGTGGGATACGACGCTGA 790
.|||||.|||||.|..|||||.||.|||||.||.||||||||.||.|||.
BPUM_0971___y 747 CACAGGGATTGGTGAGAATAAGCGTATTGTGTTATGGGATACAACACTGC 796
BSNT_01745___ 791 ACAAACTTGACGATTCAGAAATCCTGTTTATTATGGGCCACGAAATGGGC 840
|.||.||..|.|||...|||||..|.|||||.||||..||.||||||||.
BPUM_0971___y 797 AAAAGCTGAAAGATCGCGAAATTTTATTTATCATGGCACATGAAATGGGA 846
BSNT_01745___ 841 CATTATGTCATGAAGCACGTTTACATCGGTCTGGCTGGTTATTTGCTCGT 890
|||||.|||||||||||.||.||.||.||..|.||.||.|||.|..|..|
BPUM_0971___y 847 CATTACGTCATGAAGCATGTCTATATAGGATTAGCAGGATATCTAGTATT 896
BSNT_01745___ 891 GTCGCTCGCCGGATTTTATGTCATTGA-------------TAAGCTTTAC 927
||||||.||.|||||||.||..||.|| || ||.|
BPUM_0971___y 897 GTCGCTAGCGGGATTTTTTGCGATCGACCGTCTCTATTTTTA----TTTC 942
BSNT_01745___ 928 AAGCGGACGGTTCGCCTAACCCGCAGCATGTTTCATTT----AGAAGGA- 972
.|.||.|.| |.|||| ||||.|||| .||.|||
BPUM_0971___y 943 TATCGTAAG-------------GGAGCA-GTTTTATTTCGGCTGAGGGAG 978
BSNT_01745___ 973 CGGCATGATCTTGCGGCACTTCCGCT-------GTTATTGCTTT---TGT 1012
|.||..||..|.||.||.|||||||| .|.|||| |.| ||.
BPUM_0971___y 979 CCGCGCGACATCGCTGCTCTTCCGCTTCTTCTCATGATTG-TATCAGTGC 1027
BSNT_01745___ 1013 TTTCTGTTTTGAGCTTTGCGGTGACGCCTTTTTCTAATGCTGTCTCGCGT 1062
|||| .|||..||||| |.||||||.|.|||||.||.||..|.
BPUM_0971___y 1028 TTTC-ATTTACAGCTT--------CACCTTTTACAAATGCAGTTTCAAGA 1068
BSNT_01745___ 1063 TATCAGGAGAATAAG--GCTGACCAGTATGGGATCGAGTTGACAGAGAAC 1110
.|||| ||||...| ||||||.||||||.|||..|..|||||.|..||
BPUM_0971___y 1069 CATCA--AGAACGCGCAGCTGACGAGTATGCGATAAACCTGACAAAAGAC 1116
BSNT_01745___ 1111 AGAGAAGCCG---------CTGTT-AAAACGTTTCAGGATTTGGCCGTGA 1150
.||||.||.| ||.|| ||||..||.||..||
BPUM_0971___y 1117 GGAGAGGCAGGGGTGACGTCTTTTCAAAAGCTTGCAAAAT---------- 1156
BSNT_01745___ 1151 CGGGGCTGAGC-CAGGTTGATCCTCCGGTGCTTGTGAAGATTTTC----A 1195
|.||||| |.| |||||..||||.||..|..|.||||||.|.||| |
BPUM_0971___y 1157 CAGGGCT-ATCTCAGGTGAATCCACCACTTTTAGTGAAGGTCTTCCGCTA 1205
BSNT_01745___ 1196 GAGGCAGCCATCCTTCGATCATGGAACG---------GATTCAACATGCG 1236
..||||.||| .||||.|||||..| |||..||..||||
BPUM_0971___y 1206 CGGGCACCCA----ACGATGATGGAGAGAATCATGGAGATGGAAGCTGCG 1251
BSNT_01745___ 1237 GAGAAAGAAGAGAATGCGCCGGAACATC-AGGATGCTGACAAATAA 1281
||.|||||.|| |||.|| |.||.|| |||||
BPUM_0971___y 1252 GAAAAAGAGGA-----------AACGTCGAAGAAGC-----AATAA 1281
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