Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01740 and BPUM_0967
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:15
# Commandline: needle
# -asequence dna-align/BSNT_01740___yhfI.1.24716.seq
# -bsequence dna-align/BPUM_0967___yhfI.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01740___yhfI-BPUM_0967___yhfI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01740___yhfI-BPUM_0967___yhfI.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01740___yhfI
# 2: BPUM_0967___yhfI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 815
# Identity: 497/815 (61.0%)
# Similarity: 497/815 (61.0%)
# Gaps: 151/815 (18.5%)
# Score: 1410.5
#
#
#=======================================
BSNT_01740___ 1 ATGAAAGTTACAGTTATCGGATGCTATGGCGGTTTTCCGGCCGCAAATGA 50
||||||.|.||.||.||.||||||||.||.||.|||||.|||||...|||
BPUM_0967___y 1 ATGAAATTAACTGTCATTGGATGCTACGGAGGGTTTCCTGCCGCTGGTGA 50
BSNT_01740___ 51 AGCGACGTCAGGCTATTTGTTTCAGTCAGGT-GATTACTC-TCTGCTTGT 98
|||.||||||||.|||.|.|||.|.||||.| |.|| || |||||||||
BPUM_0967___y 51 AGCAACGTCAGGGTATCTTTTTGAATCAGATGGCTT--TCGTCTGCTTGT 98
BSNT_01740___ 99 TGATTGCGGCAGTGCCGTTTTGTCTAAGCTG----------TTCGGATAT 138
.||.|||||.||.|..|||.|.||.||.||| || |||||
BPUM_0967___y 99 AGACTGCGGAAGCGGTGTTCTTTCCAAACTGCAGCAATACATT--GATAT 146
BSNT_01740___ 139 GTGCCGGCGGAAAAGCTGGATGCGGTCGTTCTGTCTCATTATCACCATGA 188
.|||.|.||.|||||.||..|.||.||||||||||||||.||
BPUM_0967___y 147 --------AGAAGAACTTGATGCTGTTCTCCTTTCTCATTATCACCACGA 188
BSNT_01740___ 189 CCATATCGCTGATATCGGGCCGCTGCAATTTGCCAAGCAAGTCGG--TTC 236
.|||||.||.||||||||.||.||.||||.|||.||||.|||.|| .||
BPUM_0967___y 189 TCATATTGCAGATATCGGACCACTCCAATATGCGAAGCTAGTGGGATATC 238
BSNT_01740___ 237 GTTTCTCGGCAAAGGAGAGCA----TACGCTTCCGATTTACGGACATGAT 282
.|| |.||.||| |||| |.|||||||.||.||.||||||
BPUM_0967___y 239 ATT--TAGGAAAA----AGCAGCGGTCCGCTTCCAATCTATGGACAT--- 279
BSNT_01740___ 283 GCTGATATAGAACAGTT--TCAA-AAGC-----------TTACATATAAA 318
||.|.| |||| |||| ||.|..||.|.
BPUM_0967___y 280 -----------ACGGGTAATCAAGAAGCATTTGGGCGGATTGCGGATGAT 318
BSNT_01740___ 319 ACACATACGAAAGGGATCGCCTATCAGCCGGA---------TCAGCCGCT 359
..||||||.||.|..|..||.||||||||..| |||
BPUM_0967___y 319 GTACATACTAAGGCTAAGGCTTATCAGCCAAAAGAGGGTATTCA------ 362
BSNT_01740___ 360 GACTGCCGGTCCGTTTACGATTACCTTTTTAAAAACGATTCA-CCCGGTG 408
|.| .|||||.|||...||.|..|||||.||||||.|||| ||.|..|
BPUM_0967___y 363 -AAT--TGGTCCATTTCAAATCAATTTTTTGAAAACGGTTCATCCAGCAG 409
BSNT_01740___ 409 ACGTGCTATGCCATGCGGATTACTGACGGCAGTCACA-----CT---GTT 450
| .||||||||.|||.|.||| |||.||.| || ||.
BPUM_0967___y 410 A-ATGCTATGCGATGAGAATT--------CAGGCAAAGGATGCTGTGGTG 450
BSNT_01740___ 451 GTTTATACTGCTGATTCCAGCTATCAGGATTCATTTATACCGTTTTCG-A 499
||.|||||.||.||.||.||.||||||||..|||||.| ||.||||.| |
BPUM_0967___y 451 GTGTATACAGCAGACTCAAGTTATCAGGAGGCATTTGT-CCCTTTTAGCA 499
BSNT_01740___ 500 AAGATGCTGATTTATTGATCTCAGAATGCAATTTTTATGCCGATCAAGAC 549
|.|||||.||||||.|.||..|.|||.|.||.||.||.||.|..||.|||
BPUM_0967___y 500 AGGATGCAGATTTACTCATTGCTGAAAGTAACTTCTACGCTGGACAGGAC 549
BSNT_01740___ 550 GGAACAAGTGCAGGCCATATGA-------ACAGCCTGG-AAGCCGGGCGC 591
|||.|.||||||||.||||||| |.||..||| ||||
BPUM_0967___y 550 GGATCGAGTGCAGGACATATGAATAGTACAGAGGTTGGCAAGC------- 592
BSNT_01740___ 592 ATTGCAAAAGAAGC-------GGGAGCGGGAGAACTGCTGCTGACACATT 634
||||||..||||| ||| ||||||.|..|.||.||..
BPUM_0967___y 593 -TTGCAATGGAAGCAAATGTTGGG-------GAACTGATCATCACCCACC 634
BSNT_01740___ 635 TGCCGCATTTTGG-CGTGCATGACAATCTTCGCAAAGAAGCGAAAACCGT 683
||||.|||||||| ||| |||.|..|.||...|||.||||| |.|..|||
BPUM_0967___y 635 TGCCCCATTTTGGCCGT-CATAAAGACCTAGTCAATGAAGC-ACAGGCGT 682
BSNT_01740___ 684 TTTTAACGGAGAAGTGTATA----TTGCGAAATCAGGTTTTGTGTG---- 725
|.|..||.|..|| |||| ||||..|.|||||..||...||
BPUM_0967___y 683 TATATACTGGCAA---TATACAGCTTGCCCATTCAGGGCTTAGATGGAAC 729
BSNT_01740___ 726 --GGAAGGATAA--- 735
|||||||..|
BPUM_0967___y 730 AAGGAAGGAAGATAG 744
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