Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01736 and BPUM_0963
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:14
# Commandline: needle
# -asequence dna-align/BSNT_01736___yhfE.1.24716.seq
# -bsequence dna-align/BPUM_0963___yhfE.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01736___yhfE-BPUM_0963___yhfE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01736___yhfE-BPUM_0963___yhfE.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01736___yhfE
# 2: BPUM_0963___yhfE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1088
# Identity: 745/1088 (68.5%)
# Similarity: 745/1088 (68.5%)
# Gaps: 85/1088 ( 7.8%)
# Score: 2422.5
#
#
#=======================================
BSNT_01736___ 1 ATGACGTCTGTACGTA---AAACGA-----TGGAGCTCATTAAAGAACTG 42
||||| .|||.| |||||| |..||||.|||.||.|.||.
BPUM_0963___y 1 ATGAC-----AACGGAAGTAAACGAAACCGTTCAGCTGATTCAAAAGCTC 45
BSNT_01736___ 43 GTATCGATCCCAAGCCCGACCGGAAATACATATGAGGTGATCAATTATAT 92
||||||||||||||.|||.|.||.||||||.|..||||||||...|.|.|
BPUM_0963___y 46 GTATCGATCCCAAGTCCGTCAGGGAATACAGAAAAGGTGATCGGCTTTGT 95
BSNT_01736___ 93 TGAAAGCCTTTTAAAAGAATGGA-------AGGTAGAAACGGTTCGGAAC 135
||||.||.||.||.||| |||.| ||..|.||| |.||.
BPUM_0963___y 96 TGAACGCTTTCTACAAG-ATGTAAATATTGAGACAAAAA------GAAAT 138
BSNT_01736___ 136 CACAAGGGCGGCTTAATTGCAACGCTTCCAGGACGCGACACAT--CCCGG 183
|..|||||||||||||||||.||..||..|||| ||..|| |..||
BPUM_0963___y 139 CGTAAGGGCGGCTTAATTGCCACTATTAAAGGA----ACTGATGACAAGG 184
BSNT_01736___ 184 --CATCGCATGCTGACTGCGCACGTTGACACCCTCGGCGCTATGGTAAAG 231
||.|||||||||||.||.||.||.||.||.|||||.||.|||||||||
BPUM_0963___y 185 AACACCGCATGCTGACAGCACATGTCGATACGCTCGGTGCGATGGTAAAG 234
BSNT_01736___ 232 GAAATTAAAGC----GGACGGC--CGGCTGAAAATCGATTTAATCGGCGG 275
|||||||||.| ||||||| ||.||...|.|| ||.||.||
BPUM_0963___y 235 GAAATTAAATCAAATGGACGGCTTCGTCTTGCACTC------ATTGGAGG 278
BSNT_01736___ 276 GTTCCGCTACAACTCGATTGAGGGGGAGTATTGCCAAATTGAAACCGCCT 325
.||.|..||.|||||.||.||.||.|||||.||..||||||||||..|..
BPUM_0963___y 279 CTTTCAGTATAACTCAATCGAAGGTGAGTACTGTGAAATTGAAACATCAA 328
BSNT_01736___ 326 CAGGAAAAACGTACACAGGCA-CAATCTTAATGCATCAAACGTCTGTGCA 374
||||..|.||.||||||||.| ||.|||| ||||||||||||||.||.||
BPUM_0963___y 329 CAGGTCATACATACACAGGTACCATTCTT-ATGCATCAAACGTCCGTTCA 377
BSNT_01736___ 375 CGTATACAAAGACGCGGGAAAGGCTGAGCGGAATCAAGAGAATATGGAGA 424
.||.||...|||.||||||||.||..|.||.||.||||||||||||||..
BPUM_0963___y 378 TGTCTATGCAGATGCGGGAAAAGCAAAACGAAACCAAGAGAATATGGAAG 427
BSNT_01736___ 425 TCCGCCTAGATGAACCTGTTCACTGCCGGAAAGATACGGAGGA------- 467
|.||.||.||||||...|| |.||.||.|.||.||
BPUM_0963___y 428 TTCGTCTTGATGAAAAGGT---------GCAAAATGCAGACGATGTCAAA 468
BSNT_01736___ 468 --GCTTGGCATTGGCGTCGGAGATTTTGTGTCGTTTGATCCCCGTGTCGA 515
.|||||||||...||.||.||||||.|.||.||||||||..|.||.||
BPUM_0963___y 469 GCACTTGGCATTCAAGTAGGGGATTTTATCTCATTTGATCCGAGAGTGGA 518
BSNT_01736___ 516 GATCACATCAAGCGGATTTATTAAATCGCGCCATTTGGATGACAAAGCAA 565
..|.||.|||...||.|||||||||||..|.||..|.||||||||.||||
BPUM_0963___y 519 AGTGACGTCATCAGGTTTTATTAAATCAAGACACCTTGATGACAAGGCAA 568
BSNT_01736___ 566 GCGTCGCCTTATTGCTCCGCTTAATTCATGAAATTCAAACAGAAGACATT 615
|.||.||..|.|||||.||..|.||.|||...||.||||..|||.|||||
BPUM_0963___y 569 GTGTAGCGCTCTTGCTGCGACTCATCCATCGCATCCAAAAGGAAAACATT 618
BSNT_01736___ 616 GAGCTGCCGTATACAACCCATTTTCTT-ATTTCCAATAATGAAGAAATCG 664
...||||||.||||.||.|| .||||| |||||.|||||||||||.||.|
BPUM_0963___y 619 ACACTGCCGCATACGACGCA-CTTCTTAATTTCTAATAATGAAGAGATTG 667
BSNT_01736___ 665 GTTACGGCGGGAATTCGAATATTCCTCCTGAAACAGTTGAATATTTGGCG 714
|.|||||.||.||.||.||||||||....|||||.||.|||||..|.||.
BPUM_0963___y 668 GCTACGGTGGAAACTCCAATATTCCAGAAGAAACGGTGGAATACCTCGCT 717
BSNT_01736___ 715 GTTGATATGGGGGCTATCGGTGACGGGCAGGCGACAGATGAATATTCTGT 764
|||||||||||.||.|||||.||.||.||..|.||||||||||||...||
BPUM_0963___y 718 GTTGATATGGGAGCGATCGGCGATGGTCAATCAACAGATGAATATAGCGT 767
BSNT_01736___ 765 ATCAATCTGTGTGAAGGATGCGAGCGGGCCGTATCATTATCAGCTCA-GA 813
.||.||.|||||||||||..|.|||||.||.||||||||| .|.|.| |.
BPUM_0963___y 768 GTCTATTTGTGTGAAGGACTCAAGCGGTCCTTATCATTAT-GGATTACGC 816
BSNT_01736___ 814 AAGCATTTAGTTCAATTAGCCGAGAAG----CATCATATTGACTATAAGC 859
||||||||||....|||||| ||||| || |.|||||.|||...|
BPUM_0963___y 817 AAGCATTTAGCCGCATTAGC--AGAAGAGAACA--ACATTGATTATCGTC 862
BSNT_01736___ 860 TTGATATATATCCGTACTACGGGTCTGATGCGTCAGCAGCGATCAAATCC 909
|.|||||.||.||.||.|||||.||||||||.|||||||||||...|.|.
BPUM_0963___y 863 TAGATATTTACCCTTATTACGGCTCTGATGCATCAGCAGCGATTCGAGCA 912
BSNT_01736___ 910 GGGCATGATATTGTACATGGCCTCATAGGGCCGGGAATTGACGCTTCCCA 959
|||||||||||..|.|||||..|.||.||.||.||.||.||..|.||.||
BPUM_0963___y 913 GGGCATGATATCATCCATGGATTGATTGGTCCTGGGATCGATTCCTCGCA 962
BSNT_01736___ 960 TGCATTTGAACGCACCCATAAATCATCTCTTCGCCATACCGCTAAGCTTC 1009
||||||||||||.||.|||.||...||||||..||||||.||..|.||||
BPUM_0963___y 963 TGCATTTGAACGAACACATGAAGATTCTCTTGTCCATACAGCGGATCTTC 1012
BSNT_01736___ 1010 TGTATTACTATGTACAGTCACCA------ATGGTATAA 1041
|.|||.||||.||.||.|||.|| |..|.||||
BPUM_0963___y 1013 TTTATCACTACGTGCAATCATCATTAATTACAGCATAA 1050
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