Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01707 and BPUM_0946
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:12
# Commandline: needle
# -asequence dna-align/BSNT_01707.1.24716.seq
# -bsequence dna-align/BPUM_0946.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01707-BPUM_0946.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01707-BPUM_0946.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01707
# 2: BPUM_0946
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 228
# Identity: 113/228 (49.6%)
# Similarity: 113/228 (49.6%)
# Gaps: 72/228 (31.6%)
# Score: 259.5
#
#
#=======================================
BSNT_01707 1 TTGTCTGTCTTTTTGATTGTATTATCCTGCATCACACTTGCCTTCGCTT- 49
||||||||||||.||.|.||.||..|.||.||| |...|||.||
BPUM_0946 1 TTGTCTGTCTTTCTGTTCGTTTTTACGTGTATC------GGTGTCGTTTT 44
BSNT_01707 50 --CAGG-CGCTGTTTACTATATCAAACTTCTCAGCCAGGCTGCT------ 90
|||| .||| |||| ||| ||.| ||.||.|.|||
BPUM_0946 45 TACAGGTGGCT-----CTAT-TCA---TTAT--GCAAGACAGCTGGGGTA 83
BSNT_01707 91 -------TCTTATCCGCCCAAGAGGGTTATCCGGCAGAAAGCGCTTGTTT 133
|||||||||||.||....||..|...|||.|||||.|||||.|
BPUM_0946 84 TGCAGGGTCTTATCCGCCAAAACATGTATTAAAGCAAAAAGCACTTGTGT 133
BSNT_01707 134 GTTCAACCGGAAC--------CGC-----------CTTTACACTATGTCT 164
||.|..|.||..| ||| ||||..|| ||
BPUM_0946 134 GTGCGGCAGGTGCAGGAATTTCGCTCCTCATTTTGCTTTTGAC-----CT 178
BSNT_01707 165 TATCTTTTTCACAAAACTCCTCGCTTAA 192
|.|.|.|||.|.||
BPUM_0946 179 TTTTTCTTTTATAA-------------- 192
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