Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01704 and BPUM_0944
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:12
# Commandline: needle
# -asequence dna-align/BSNT_01704___hpr.1.24716.seq
# -bsequence dna-align/BPUM_0944___hpr.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01704___hpr-BPUM_0944___hpr.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01704___hpr-BPUM_0944___hpr.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01704___hpr
# 2: BPUM_0944___hpr
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 640
# Identity: 449/640 (70.2%)
# Similarity: 449/640 (70.2%)
# Gaps: 47/640 ( 7.3%)
# Score: 1503.0
#
#
#=======================================
BSNT_01704___ 1 ATGAATCGAGT-GGAACCGCCCTATGATGTGAAAGAAGCTCTAGTCTTCA 49
||||||| |.| |||||.|||.|..|||||.||||||||.||..|.||||
BPUM_0944___h 1 ATGAATC-ATTCGGAACAGCCTTTCGATGTAAAAGAAGCACTTTTATTCA 49
BSNT_01704___ 50 CCCAGAAAATGGCTCAGCTTAGCAAGGCTCTTTGGAAATCGATCGAGAAG 99
..||.|.||||||.||..|.|||||.||||||||||||||.||.||.|||
BPUM_0944___h 50 GTCAAAGAATGGCCCAATTGAGCAAAGCTCTTTGGAAATCCATTGAAAAG 99
BSNT_01704___ 100 GATTGGCAGCAATGGCTCAAACCGTATGACCTGAATATTAATGAGCATCA 149
||.||||||||.|||.|||||||||||.||||.|||||.|||||.|||||
BPUM_0944___h 100 GACTGGCAGCAGTGGATCAAACCGTATAACCTAAATATCAATGAACATCA 149
BSNT_01704___ 150 TATTTTATGGATTGCGTATCAATTGAATGGAGCTTCCATTTCTGAAATCG 199
||||||.|||||||||||||||||.||.||||||||.||.||.|||||.|
BPUM_0944___h 150 TATTTTGTGGATTGCGTATCAATTAAAAGGAGCTTCAATATCAGAAATTG 199
BSNT_01704___ 200 CGAAGTTCGGGGTCATGCACGTATCAACCGCATTCAACTTTTCAAAAAAG 249
|.|||||.||.|||||||||||||||||.||.||.|||||.||.||.||.
BPUM_0944___h 200 CAAAGTTTGGCGTCATGCACGTATCAACAGCGTTTAACTTCTCCAAGAAA 249
BSNT_01704___ 250 CTGGAAGAACGGGGATATTTAAGGTTCTCCAAACGGCTGAATGATAAACG 299
|||||.|||||.||||.|||||..||.||.|||..|.|.||.||||||||
BPUM_0944___h 250 CTGGAGGAACGAGGATTTTTAAAATTTTCTAAAAAGTTAAACGATAAACG 299
BSNT_01704___ 300 GAACACATATGTCCAATTGA-CTGAGG----AAGGTACCGAGGTATTCTG 344
.||.||.||| ||||| ||.|.| ||||....|||..||||..
BPUM_0944___h 300 CAATACGTAT-----ATTGAGCTAACGCCAAAAGGCGAAGAGACATTCCA 344
BSNT_01704___ 345 GAGCTTGCTTGAGGAATTTGATCCGACACGCAAC-GCTGTTTTTAAAGGG 393
.|...|.||.||.||.|.|||.|||.||.| ||| |.|.||.|.|||||.
BPUM_0944___h 345 TAAACTACTCGAAGATTATGACCCGGCAAG-AACTGGTATTGTCAAAGGC 393
BSNT_01704___ 394 TCACAGC--CTTTGTATCATTTATTCGGAAAATTTCCTGAAGTGGCAGAA 441
.|||||| |||..|..|||||| |||||||||.|||||..|...||||
BPUM_0944___h 394 GCACAGCCGCTTCATGACATTTA--CGGAAAATTCCCTGAGATTTTAGAA 441
BSNT_01704___ 442 ATGATGTGTATGATACGCCATATCTACGGCGATGATTTTATGGAAATTTT 491
|||||||||||.||.||..|.|||||.||.||.||.||.|||||.|||||
BPUM_0944___h 442 ATGATGTGTATTATCCGAAACATCTATGGTGAGGACTTCATGGAGATTTT 491
BSNT_01704___ 492 CGAAACGTCACTCACCAATATTGACAATGAC--TTTGAA--AGCGTAAAC 537
.||.|..||..|..|.||.|||||.||.||| |||||| |||| .
BPUM_0944___h 492 TGAGAAATCGTTTTCAAACATTGAGAAGGACTTTTTGAACGAGCG----A 537
BSNT_01704___ 538 GGAAAACTGAAGAAAAAAGCAAAGGA-----------CAG----TGCGGC 572
||||.|.|.|.||||||..|..|||| ||| |||.||
BPUM_0944___h 538 GGAAGAGTCACGAAAAAGTCTGAGGAACTTGAAGACTCAGCTGATGCAGC 587
BSNT_01704___ 573 GGATGAACCGGCTGAAGAGCTTGAACCTGTAAACAGTTAA 612
.||..||.|||||.|||....|.||..||| ||||
BPUM_0944___h 588 AGAAAAAGCGGCTAAAGCAAATCAAATTGT------TTAA 621
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