Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01703 and BPUM_0943
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:12
# Commandline: needle
# -asequence dna-align/BSNT_01703___yhaI.1.24716.seq
# -bsequence dna-align/BPUM_0943___yhaI.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01703___yhaI-BPUM_0943___yhaI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01703___yhaI-BPUM_0943___yhaI.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01703___yhaI
# 2: BPUM_0943___yhaI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 372
# Identity: 224/372 (60.2%)
# Similarity: 224/372 (60.2%)
# Gaps: 66/372 (17.7%)
# Score: 603.5
#
#
#=======================================
BSNT_01703___ 1 ------ATGGATCATCGCATTGAGCGA-TTAGAATATTACATACAATTAT 43
||.||..|.|| |.|||||.| .|.||||||||.||..||.|.|
BPUM_0943___y 1 ATGAGTATTGAGGAACG-AATGAGCCAGCTCGAATATTATATGGAACTTT 49
BSNT_01703___ 44 TAGTGA----AAACAGTAGATATGGACAGGTACCCCTTCTATGGGCTTC- 88
|..||| .|.| ||||||..|.|.||.||.|..|||| |
BPUM_0943___y 50 TGCTGACGGCGACC----GATATGAGCCGTTATCCATATTATG-----CA 90
BSNT_01703___ 89 TCATTGATAAAGGGCTGAGCAAGG------AAGAAGGGGAAGCGGTTATG 132
|.||||||.| ||| ||| ||| ||||| |||||| .
BPUM_0943___y 91 TTATTGATGA--GGC--AGC-AGGTATCGAAAGAA---GAAGCG-----C 127
BSNT_01703___ 133 AGGATAT---GCGACGAATTGTCGGAAGAGCTGGCA----------ACA- 168
||||.|| ||| .|.|||| |..|||||..|| |||
BPUM_0943___y 128 AGGAAATTGAGCG--TATTTGT--GCTGAGCTTTCAGAGGAAATGGACAA 173
BSNT_01703___ 169 -CAAAAAGCGCAAGGATTTGTAACCTTTGATAAGCTCCTTGCGCTTTTTG 217
||||||||.|||||.|..||.|..|||||..|..|.|||||||||||||
BPUM_0943___y 174 GCAAAAAGCACAAGGCTACGTCATGTTTGACGATATGCTTGCGCTTTTTG 223
BSNT_01703___ 218 CCGGACAGCTGAATGAAAAATTAGATGTTCATGAAACGATTTTTGCCCTG 267
|.||||||.|.|.||||||..|.|||||.|||||.|||||.|||||..||
BPUM_0943___y 224 CAGGACAGTTAATTGAAAAGCTGGATGTGCATGAGACGATATTTGCATTG 273
BSNT_01703___ 268 TATGAGCAGGGACTTTATCAAGAGCTGATGGAAGTCTTTATCGACATCAT 317
.||||.||.||.||.|.|||...|.|.|||.|.|..|||||..|.|||||
BPUM_0943___y 274 CATGATCAAGGGCTGTTTCAGCCGTTAATGAATGAATTTATAAAGATCAT 323
BSNT_01703___ 318 GAAGCATTTTGATTAA------ 333
.||.||.|||||||..
BPUM_0943___y 324 TAAACAATTTGATTTGCTTTAG 345
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