Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01691 and BPUM_0934
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:11
# Commandline: needle
# -asequence dna-align/BSNT_01691___yhaO.1.24716.seq
# -bsequence dna-align/BPUM_0934___yhaO.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01691___yhaO-BPUM_0934___yhaO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01691___yhaO-BPUM_0934___yhaO.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01691___yhaO
# 2: BPUM_0934___yhaO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1402
# Identity: 796/1402 (56.8%)
# Similarity: 796/1402 (56.8%)
# Gaps: 362/1402 (25.8%)
# Score: 1988.5
#
#
#=======================================
BSNT_01691___ 1 ATGTTGACTGATCTAACCTTTATTCATGCGGCAGATCTTCATCTTGACAG 50
||||||.|.||.||.|||||||||||.||||||.|.|||.|.|||||
BPUM_0934___y 1 ---TTGACTAAGCTCACTTTTATTCATGCCGCAGATTTACATTTAGACAG 47
BSNT_01691___ 51 CCCGTTT-TACGGGATATCGCATCTGCCGGAGCCGATT----TTTGCCCG 95
.||.||| || ||.||.|||.||.| ||..||| || |||...||
BPUM_0934___y 48 TCCATTTGTA-GGAATGTCGAATAT-CCCTAGC---TTACCCTTTAAGCG 92
BSNT_01691___ 96 GATTAAAGAAAGCACGTTTGCAAGCG-TGAG-ACATATGATAGA---CGC 140
|.|.||||||||.||.|||..|||.| |.|| ||||.| |.|| |||
BPUM_0934___y 93 GCTCAAAGAAAGTACATTTCAAAGTGCTAAGAACATCT--TTGATCTCGC 140
BSNT_01691___ 141 CGCAGTGAGAGAGCACGTTGATTTCATTTTGCTG-GCGGGAGATCTGTTT 189
|| .||||.|.||| ||.||.||..|..||||| || ||||||.|.|||
BPUM_0934___y 141 CG--TTGAGCGGGCA-GTAGACTTTGTGCTGCTGAGC-GGAGATTTATTT 186
BSNT_01691___ 190 GATGAAGCCAATCGAAGCTTAAAGGCTCAGCTCTTTTTGAAAAAACAGTT 239
||||||.|||||||.|||||.||.||.|||||.|||||.|.|||.|||||
BPUM_0934___y 187 GATGAATCCAATCGCAGCTTGAAAGCACAGCTGTTTTTAAGAAACCAGTT 236
BSNT_01691___ 240 TGAAAGACT-----CAGAGAGTGCGGGATT----TCGGTATACGTCATCT 280
||.|||||| ||.| ||||||| ||..|| |.||.|
BPUM_0934___y 237 TGTAAGACTGCAAACACA-----CGGGATTGAAGTCTTTA----TTATTT 277
BSNT_01691___ 281 TTGGGAATCACGATCATCTTGGCGGGGAGTGGACGCCGATTGAATGGCCT 330
.|||||||||.||||||.|.|||||.||.|||||.||||||||.|||||.
BPUM_0934___y 278 ATGGGAATCATGATCATTTAGGCGGTGAATGGACACCGATTGAGTGGCCC 327
BSNT_01691___ 331 GAGAATGTCCATATTTTTTCGTCCGCTGTTCCAGAAGAAAAATCGTTTTT 380
||||||||.||..|.|||.|| .|..||.|...|||..|..||...|.|
BPUM_0934___y 328 GAGAATGTACAGGTCTTTACG--AGTAGTACACCAAGTGAGCTCTCCTAT 375
BSNT_01691___ 381 TAAAGAAGG---CAGGCGCATAGCAAGCATTTACGGCTTCAGCTATCAAG 427
||..||.|| || ||...|.||.||.|||||.||.||.||||| ||
BPUM_0934___y 376 TATCGAGGGGATCA-GCTTGTCGCGAGTATTTATGGGTTTAGCTA-CA-- 421
BSNT_01691___ 428 CAAGAGCAG--TGAC--GGAAAACCAAGCCGCCCGCTATCGGAGAT---- 469
||||||.| ||.| .||||| ||| ||.||
BPUM_0934___y 422 -AAGAGCGGGCTGTCTATGAAAA-------------TAT--GACATTTCA 455
BSNT_01691___ 470 -----------CAACTGACGCACCGTTTCATATCGGCATGCTCCACGGCA 508
|.||.||.||..|.|.|||.||.|..|||||.|||||||
BPUM_0934___y 456 TTATGTCAAAACGACAGATGCTGCCTATCACATTGCGATGCTTCACGGCA 505
BSNT_01691___ 509 CGCTGTCAGGATCTGAAGGACACGATCCGTATTGCCCGTTTACA-CATGA 557
|..|..|.|||...||||||||.|||.|.|| |||||..||.|| |.|.|
BPUM_0934___y 506 CATTAGCCGGACAAGAAGGACATGATGCATA-TGCCCCATTTCAGCTTCA 554
BSNT_01691___ 558 CGACCTCGTGAAAAGCGGGA--TGGATTATTGGGCGCTTGGCCATATACA 605
..|.|||.| ||.|||||| |.|||||||||||||||||.||||||||
BPUM_0934___y 555 GCAGCTCAT--AACGCGGGATTTCGATTATTGGGCGCTTGGACATATACA 602
BSNT_01691___ 606 TAAACG---CCAGGTTCTATCTGCCGAGCATCCGGCAG---------TCA 643
||||.| || |||| |||| |.|| |.|
BPUM_0934___y 603 TAAAAGAGCCC---TTCT---------GCAT---GAAGACCCATATATTA 637
BSNT_01691___ 644 TTTACCCGGGAAA----CACGCAAGCACGCCATATAAAGGAGACGGGAGA 689
|||||||.||.|| ||.| ||| |.||||||||.||.||||||||
BPUM_0934___y 638 TTTACCCTGGTAATGTCCAGG---GCA-GACATATAAAAGAAACGGGAGA 683
BSNT_01691___ 690 TAAAGGTTATTA-----------TCTC-----GTTCATGTGACAAACGGA 723
.|||||.|.||| |||| .||||.|.| .|.|||
BPUM_0934___y 684 AAAAGGCTGTTACTTGATTCAACTCTCCGAAGATTCACGGG--CAGCGG- 730
BSNT_01691___ 724 GATATATCTTATGAATTTCAGAGAGCGCATGATGTCCTGTGGGAAAAAGC 773
||.||||.|..| |.||| |||.||.|.|..||.|||..
BPUM_0934___y 731 -----ATTTTATTAGCT-------GTGCA-GATATCATCTTTGAGAAACT 767
BSNT_01691___ 774 GGCGGTTGATGTGACGGA---GGCAAAGAATATGACAGCCCTCTTCCAAA 820
|||..|.||..|.||.|| ||| ..|||||||.|.|||..||..|.
BPUM_0934___y 768 GGCAATAGACATCACAGAAACGGC---TCATATGACGGACCTTGTCATAC 814
BSNT_01691___ 821 TGGTGGAGGACACGTTTTCGAAGC--------TG--CGGAAAAAG---GG 857
|.||||| |||| || |.||||.|| ||
BPUM_0934___y 815 TTGTGGA-------------AAGCAAAATCAATGAACTGAAAGAGGACGG 851
BSNT_01691___ 858 GAGCCCTGTTTGTGTAAGGCTTG-TTTTACAAGGGACGGCGCC------- 899
.|..|||..||.|||.||..||| .||.|||.|.|| .|||||
BPUM_0934___y 852 CATTCCTCATTTTGTGAGAATTGAATTGACAGGTGA-TGCGCCTTCTTAC 900
BSNT_01691___ 900 ----GGAATGGCT--GCTGGAGGCGCCAAAAGGCACCTTGGATGA--GTT 941
.|.|| .|| |||.||.|| ||...||| |.|| ||||| |||
BPUM_0934___y 901 CTTGAGCAT-ACTCAGCTTGAAGC-CCTCGAGG-AGCT--GATGACTGTT 945
BSNT_01691___ 942 TCTTGAAGCTCTTCAGGAACAAGAAGCGGAAGAGGAACAT---TTCGTTT 988
| ||||.|||||||| ||||||.|||.|| ||.||||
BPUM_0934___y 946 T----------TTCATGAACAAGA---GGAAGATGAAGATGTGTTTGTTT 982
BSNT_01691___ 989 GGCCTCTTAG--------ATTG---GACGATGAGACAGAAAACGAAGCAA 1027
|| | |||| |.||| || ||||| ||.||
BPUM_0934___y 983 GG-------GTGATGTCAATTGACTGCCGA----AC---AAACG-AGGAA 1017
BSNT_01691___ 1028 ---ACCTAACAAACCTTGA----TCCTTTTTTTGGCGGTTTATTTGAAGA 1070
|.|||.|.| || ||||| |||||||.
BPUM_0934___y 1018 GTGATCTATCCA-----GAAGATTCCTT--------------TTTGAAGG 1048
BSNT_01691___ 1071 CATTGATCGCAGCGAT--CT--------GTCA---GACGTGCTGGAAGGG 1107
.|.|.|..||||..|| || |||| ||.|.||| |
BPUM_0934___y 1049 AACTAACGGCAGAAATTGCTCAGTTTGAGTCATATGAAGAGCT------G 1092
BSNT_01691___ 1108 CTT---------GAGCGGCATCCAGTGTATA-GAAGGCA-------CGCG 1140
||| .||||.||.|||...||.| ||||.|| |||
BPUM_0934___y 1093 CTTTCACCGATCAAGCGTCACCCAACCTACAGGAAGTCAGGAAAAGCGC- 1141
BSNT_01691___ 1141 GACCGGTTTAGCCAAGAGGAGGTAAAGGAAATAAAAGA------GC--AG 1182
|.|..||||||||.|.|..|||.|||||||| || ||
BPUM_0934___y 1142 -------TCACACAAGAGGATGAATTGGATATAAAAGAAGAAGCGCAAAG 1184
BSNT_01691___ 1183 GC-----ACAGATATTATTGAAAAGACAGCTTAAGGTGC--TTGATACAT 1225
|| ||||| ||||||.|| || || ||
BPUM_0934___y 1185 GCTGCTGACAGA-------------ACAGCTAAA---GCAATT-----AT 1213
BSNT_01691___ 1226 GA 1227
||
BPUM_0934___y 1214 GA 1215
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