Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01676 and BPUM_0927
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:10
# Commandline: needle
# -asequence dna-align/BSNT_01676___yheB.1.24716.seq
# -bsequence dna-align/BPUM_0927___yheB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01676___yheB-BPUM_0927___yheB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01676___yheB-BPUM_0927___yheB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01676___yheB
# 2: BPUM_0927___yheB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1266
# Identity: 740/1266 (58.5%)
# Similarity: 740/1266 (58.5%)
# Gaps: 264/1266 (20.9%)
# Score: 1952.0
#
#
#=======================================
BSNT_01676___ 1 ----ATGGGTATTGCAGGAACCTTTATTTTTATGATCGTGATCGGCGCTG 46
|| .|||| || .|||.|||.|.||||||||.||.||.||.||.|
BPUM_0927___y 1 TTGAAT--ATATT-CA-CAACGTTTCTCTTTATGATTGTTATAGGAGCCG 46
BSNT_01676___ 47 CCATTGGAGCGGTGACCAATCATTTAGCAATTCAAATGCTGTTTAGGCCG 96
..||.|||||.|.|||.||.|||.|.||.|||.|||||||.|||.|.||.
BPUM_0927___y 47 TTATAGGAGCAGCGACAAACCATCTTGCGATTAAAATGCTTTTTCGCCCT 96
BSNT_01676___ 97 TATAAAGCGTACTATTTGTTTGGGAAGCGAG-TTCCTTTTACGCCCGGGC 145
|||||..||||.||.||.||.|||||.| || ||||||||||.||.||||
BPUM_0927___y 97 TATAAGCCGTATTACTTATTCGGGAAAC-AGCTTCCTTTTACACCGGGGC 145
BSNT_01676___ 146 TGATTCCAAGACGGCGAGATGAACTTGCAAAACAAATGGGACTGATGGTA 195
|.|||||.|.|.|..||||||||.|.||.||.|||.|.|||.|..||||.
BPUM_0927___y 146 TCATTCCTAAAAGAAGAGATGAAGTAGCGAAGCAAGTTGGAGTCTTGGTT 195
BSNT_01676___ 196 GTCAATCATCTCTTAACCCCTGAAGGCATTAAAAAGCGGCTCG--TC-TC 242
.|..|.|||.|..|.||.||.|||||.|||.|||||.|..|.| || ||
BPUM_0927___y 196 ATGGAGCATTTGCTCACACCAGAAGGTATTCAAAAGAGATTTGAATCATC 245
BSNT_01676___ 243 TGATGCAGCCAAAACGCAG--GCTCTTCGAGTGGGGGA-ACAG------- 282
|||.|| ||.|||| |.|||| |.| ||||
BPUM_0927___y 246 TGAGGC------AAAGCAGGAGATCTT--------GCATACAGTCCATCG 281
BSNT_01676___ 283 -CTGATTCAAAA----GCTGTCACTTTCTGAAG-TGACAGTAAAAGAAGC 326
.|||||.|.|| ||||.|| ||.|| |.||||| ||
BPUM_0927___y 282 ATTGATTGACAAAGGCGCTGACA-----TGGAGATTACAGT-------GC 319
BSNT_01676___ 327 -------GCTTGAAAAAGCCGG----------GATGAAGCGCCCCGAAAA 359
|.|.||||.|..||| |.||| ||..||
BPUM_0927___y 320 TCTCTTTGTTAGAAAGATTCGGTGTATCACATGCTGA-------CGTCAA 362
BSNT_01676___ 360 AGCTGCTGATGCATGG-ATCAGCAGCTGGACCGATGATAAGCTGAATGAG 408
| ||.||||.|||| .|||.|| .|||.|.|||...||||| .|
BPUM_0927___y 363 A---GCAGATGAATGGCTTCATCA-TTGGTCTGATCGGAAGCT-----CG 403
BSNT_01676___ 409 CTTTTCCGCCAA--------TACGGGCACCAATCGTTAAAAGAGCTGGTG 450
|||..|.||.|| .||| |.|||.|||||...|||.|..|.
BPUM_0927___y 404 CTTCACTGCTAAAAAAATATAACG---AGCAAACGTTATCTGAGTTACTC 450
BSNT_01676___ 451 CCTATAGAGGTGCAGGAAAAGCTTGAAGA-------AAAGATTCC-GATG 492
||..||||.|| |||||| .||.| |||.||||| ||||
BPUM_0927___y 451 CCATTAGAAGT---GGAAAA----CAAAATTTCGTCAAAAATTCCAGATG 493
BSNT_01676___ 493 ATTTCAG--GATATATATTGTCACGGAGTG---TCCGTTATTTTGAAAGT 537
||| ||| |||||| |.|..|||.| |.|.|||.|||||||||
BPUM_0927___y 494 ----CAGCAGAT-TATATT-TTAAAGAGAGGCATTCATTACTTTGAAAGT 537
BSNT_01676___ 538 GATGAAGGAAAAATCCGTCTTGGCAATATGATTGATGACTTTTTAAAAGA 587
||.|||||.|||....|.||||||||||||||||||||.||.|||||.||
BPUM_0927___y 538 GAAGAAGGTAAAGCGAGGCTTGGCAATATGATTGATGATTTCTTAAAGGA 587
BSNT_01676___ 588 GCGCGGCATGCTTGGAAGCATGGTGCAAATGTTTCTTGGCAATTCAAGCC 637
.||.|||||||||||..|.|||||.|||||||||.|.||.|||||||||.
BPUM_0927___y 588 ACGAGGCATGCTTGGCGGTATGGTTCAAATGTTTTTAGGAAATTCAAGCT 637
BSNT_01676___ 638 TTGCGGATCGCGTGCTGCCGGAGCTGCTGAAATTCTTGCGCAATGAGGAA 687
|....||.||.||.|..||.||..|..|.||.||.||..|.||||..|||
BPUM_0927___y 638 TAATTGACCGAGTACATCCTGAAATCATTAAGTTTTTAAGAAATGCAGAA 687
BSNT_01676___ 688 ACAAATAAATTGCTT-TCTGATCTCTTAAAAAACGAATGGGGCAAGCTGA 736
|||||.||.|| ||| .|.|||.|..||....|.|||||||..|||.|||
BPUM_0927___y 688 ACAAAGAAGTT-CTTAACAGATTTACTAGTTCAGGAATGGGAAAAGGTGA 736
BSNT_01676___ 737 GGGAGTATACGTTTAATGAAGCAGATGAAAAATGGAATGCAAAGGCGCTC 786
...|.|.|.|..||.|.|||...|||||.||||||||||.|||||.|||.
BPUM_0927___y 737 AACAATTTTCACTTCAGGAACTGGATGATAAATGGAATGTAAAGGAGCTT 786
BSNT_01676___ 787 ATTTTCAGTTTGAAACGAAGAGTGCTGCAAGCATTTTCGACTGCCCCTTT 836
..||..|||.||||| |||||.|| .||||
BPUM_0927___y 787 GCTTATAGTGTGAAA-------------AAGCAATT---------GCTTT 814
BSNT_01676___ 837 C------TTCGACAATACG----ATTGG-CACG----------CTTACCG 865
| .||.|||| |.| ||||| ||.| |||| .|
BPUM_0927___y 815 CACACTTCTCTACAA-AGGTGATATTGGACAAGCCAGTTGGATCTTA-TG 862
BSNT_01676___ 866 TCCGCTATGAATCTG-AGCTG----ACCCAGCAAATGCTGCCGGCACTGT 910
||.| |||| | ||||| .|.||..|.||.|| .|||||
BPUM_0927___y 863 TCAG---TGAA---GTAGCTGTTGATCTCAAAATATACT--TGGCAC--- 901
BSNT_01676___ 911 TAGACAAATTGCTTG-----AAGGGATTTCGTCCAACCTTGAAAGTGTCT 955
.|.|||||| ||||||.|| ||||...|.
BPUM_0927___y 902 ------CAGTGCTTGTCGATAAGGGAATT------------AAAGCAGCA 933
BSNT_01676___ 956 TAAAACGGTTGCGTCTTGAGG----------AAATCGTCAAG-------- 987
|.||| |||.| |.|||| |||.| |||||
BPUM_0927___y 934 TCAAA----TGCAT-TAGAGGGACTGCTCGCAAAGC-TCAAGTTTGAAGA 977
BSNT_01676___ 988 ----------GAGCAGGTGGATCAGTTCCCGGTGGAGCGTCTTGAAGAAA 1027
||||||.|.||.|..||.||| |||.||.|||
BPUM_0927___y 978 TATCATTCGTGAGCAGATTGAACTTTTTCCG---------CTTAAAAAAA 1018
BSNT_01676___ 1028 TGGTG----CTGTC-----CATTTCAAAAAAAGAATTTAAAATGATTACC 1068
|||.| .|||| ||||||.||.||.|||.||||.|||||.||.
BPUM_0927___y 1019 TGGAGGAGCTTGTCATTAGCATTTCCAACAATGAACTTAAGATGATCACG 1068
BSNT_01676___ 1069 TATTTGGGGGGCCTTCTCGGCGGAATTATAGGCGCGATTCAAGCATTGTT 1118
|.|||.||.||..||.|.||.|||.|.||.|||||.||.||||||.|.||
BPUM_0927___y 1069 TTTTTAGGCGGTTTTTTAGGAGGATTAATCGGCGCAATCCAAGCAATCTT 1118
BSNT_01676___ 1119 TGTCATCCTTTTTTAA 1134
|||||..||.||||||
BPUM_0927___y 1119 TGTCACGCTCTTTTAA 1134
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