Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01676 and BPUM_0927

See Amino acid alignment / Visit BSNT_01676 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:10
# Commandline: needle
#    -asequence dna-align/BSNT_01676___yheB.1.24716.seq
#    -bsequence dna-align/BPUM_0927___yheB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01676___yheB-BPUM_0927___yheB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01676___yheB-BPUM_0927___yheB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01676___yheB
# 2: BPUM_0927___yheB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1266
# Identity:     740/1266 (58.5%)
# Similarity:   740/1266 (58.5%)
# Gaps:         264/1266 (20.9%)
# Score: 1952.0
# 
#
#=======================================

BSNT_01676___      1 ----ATGGGTATTGCAGGAACCTTTATTTTTATGATCGTGATCGGCGCTG     46
                         ||  .|||| || .|||.|||.|.||||||||.||.||.||.||.|
BPUM_0927___y      1 TTGAAT--ATATT-CA-CAACGTTTCTCTTTATGATTGTTATAGGAGCCG     46

BSNT_01676___     47 CCATTGGAGCGGTGACCAATCATTTAGCAATTCAAATGCTGTTTAGGCCG     96
                     ..||.|||||.|.|||.||.|||.|.||.|||.|||||||.|||.|.||.
BPUM_0927___y     47 TTATAGGAGCAGCGACAAACCATCTTGCGATTAAAATGCTTTTTCGCCCT     96

BSNT_01676___     97 TATAAAGCGTACTATTTGTTTGGGAAGCGAG-TTCCTTTTACGCCCGGGC    145
                     |||||..||||.||.||.||.|||||.| || ||||||||||.||.||||
BPUM_0927___y     97 TATAAGCCGTATTACTTATTCGGGAAAC-AGCTTCCTTTTACACCGGGGC    145

BSNT_01676___    146 TGATTCCAAGACGGCGAGATGAACTTGCAAAACAAATGGGACTGATGGTA    195
                     |.|||||.|.|.|..||||||||.|.||.||.|||.|.|||.|..||||.
BPUM_0927___y    146 TCATTCCTAAAAGAAGAGATGAAGTAGCGAAGCAAGTTGGAGTCTTGGTT    195

BSNT_01676___    196 GTCAATCATCTCTTAACCCCTGAAGGCATTAAAAAGCGGCTCG--TC-TC    242
                     .|..|.|||.|..|.||.||.|||||.|||.|||||.|..|.|  || ||
BPUM_0927___y    196 ATGGAGCATTTGCTCACACCAGAAGGTATTCAAAAGAGATTTGAATCATC    245

BSNT_01676___    243 TGATGCAGCCAAAACGCAG--GCTCTTCGAGTGGGGGA-ACAG-------    282
                     |||.||      ||.||||  |.||||        |.| ||||       
BPUM_0927___y    246 TGAGGC------AAAGCAGGAGATCTT--------GCATACAGTCCATCG    281

BSNT_01676___    283 -CTGATTCAAAA----GCTGTCACTTTCTGAAG-TGACAGTAAAAGAAGC    326
                      .|||||.|.||    ||||.||     ||.|| |.|||||       ||
BPUM_0927___y    282 ATTGATTGACAAAGGCGCTGACA-----TGGAGATTACAGT-------GC    319

BSNT_01676___    327 -------GCTTGAAAAAGCCGG----------GATGAAGCGCCCCGAAAA    359
                            |.|.||||.|..|||          |.|||       ||..||
BPUM_0927___y    320 TCTCTTTGTTAGAAAGATTCGGTGTATCACATGCTGA-------CGTCAA    362

BSNT_01676___    360 AGCTGCTGATGCATGG-ATCAGCAGCTGGACCGATGATAAGCTGAATGAG    408
                     |   ||.||||.|||| .|||.|| .|||.|.|||...|||||     .|
BPUM_0927___y    363 A---GCAGATGAATGGCTTCATCA-TTGGTCTGATCGGAAGCT-----CG    403

BSNT_01676___    409 CTTTTCCGCCAA--------TACGGGCACCAATCGTTAAAAGAGCTGGTG    450
                     |||..|.||.||        .|||   |.|||.|||||...|||.|..|.
BPUM_0927___y    404 CTTCACTGCTAAAAAAATATAACG---AGCAAACGTTATCTGAGTTACTC    450

BSNT_01676___    451 CCTATAGAGGTGCAGGAAAAGCTTGAAGA-------AAAGATTCC-GATG    492
                     ||..||||.||   ||||||    .||.|       |||.||||| ||||
BPUM_0927___y    451 CCATTAGAAGT---GGAAAA----CAAAATTTCGTCAAAAATTCCAGATG    493

BSNT_01676___    493 ATTTCAG--GATATATATTGTCACGGAGTG---TCCGTTATTTTGAAAGT    537
                         |||  ||| |||||| |.|..|||.|   |.|.|||.|||||||||
BPUM_0927___y    494 ----CAGCAGAT-TATATT-TTAAAGAGAGGCATTCATTACTTTGAAAGT    537

BSNT_01676___    538 GATGAAGGAAAAATCCGTCTTGGCAATATGATTGATGACTTTTTAAAAGA    587
                     ||.|||||.|||....|.||||||||||||||||||||.||.|||||.||
BPUM_0927___y    538 GAAGAAGGTAAAGCGAGGCTTGGCAATATGATTGATGATTTCTTAAAGGA    587

BSNT_01676___    588 GCGCGGCATGCTTGGAAGCATGGTGCAAATGTTTCTTGGCAATTCAAGCC    637
                     .||.|||||||||||..|.|||||.|||||||||.|.||.|||||||||.
BPUM_0927___y    588 ACGAGGCATGCTTGGCGGTATGGTTCAAATGTTTTTAGGAAATTCAAGCT    637

BSNT_01676___    638 TTGCGGATCGCGTGCTGCCGGAGCTGCTGAAATTCTTGCGCAATGAGGAA    687
                     |....||.||.||.|..||.||..|..|.||.||.||..|.||||..|||
BPUM_0927___y    638 TAATTGACCGAGTACATCCTGAAATCATTAAGTTTTTAAGAAATGCAGAA    687

BSNT_01676___    688 ACAAATAAATTGCTT-TCTGATCTCTTAAAAAACGAATGGGGCAAGCTGA    736
                     |||||.||.|| ||| .|.|||.|..||....|.|||||||..|||.|||
BPUM_0927___y    688 ACAAAGAAGTT-CTTAACAGATTTACTAGTTCAGGAATGGGAAAAGGTGA    736

BSNT_01676___    737 GGGAGTATACGTTTAATGAAGCAGATGAAAAATGGAATGCAAAGGCGCTC    786
                     ...|.|.|.|..||.|.|||...|||||.||||||||||.|||||.|||.
BPUM_0927___y    737 AACAATTTTCACTTCAGGAACTGGATGATAAATGGAATGTAAAGGAGCTT    786

BSNT_01676___    787 ATTTTCAGTTTGAAACGAAGAGTGCTGCAAGCATTTTCGACTGCCCCTTT    836
                     ..||..|||.|||||             |||||.||         .||||
BPUM_0927___y    787 GCTTATAGTGTGAAA-------------AAGCAATT---------GCTTT    814

BSNT_01676___    837 C------TTCGACAATACG----ATTGG-CACG----------CTTACCG    865
                     |      .||.|||| |.|    ||||| ||.|          |||| .|
BPUM_0927___y    815 CACACTTCTCTACAA-AGGTGATATTGGACAAGCCAGTTGGATCTTA-TG    862

BSNT_01676___    866 TCCGCTATGAATCTG-AGCTG----ACCCAGCAAATGCTGCCGGCACTGT    910
                     ||.|   ||||   | |||||    .|.||..|.||.||  .|||||   
BPUM_0927___y    863 TCAG---TGAA---GTAGCTGTTGATCTCAAAATATACT--TGGCAC---    901

BSNT_01676___    911 TAGACAAATTGCTTG-----AAGGGATTTCGTCCAACCTTGAAAGTGTCT    955
                           .|.||||||     ||||||.||            ||||...|.
BPUM_0927___y    902 ------CAGTGCTTGTCGATAAGGGAATT------------AAAGCAGCA    933

BSNT_01676___    956 TAAAACGGTTGCGTCTTGAGG----------AAATCGTCAAG--------    987
                     |.|||    |||.| |.||||          |||.| |||||        
BPUM_0927___y    934 TCAAA----TGCAT-TAGAGGGACTGCTCGCAAAGC-TCAAGTTTGAAGA    977

BSNT_01676___    988 ----------GAGCAGGTGGATCAGTTCCCGGTGGAGCGTCTTGAAGAAA   1027
                               ||||||.|.||.|..||.|||         |||.||.|||
BPUM_0927___y    978 TATCATTCGTGAGCAGATTGAACTTTTTCCG---------CTTAAAAAAA   1018

BSNT_01676___   1028 TGGTG----CTGTC-----CATTTCAAAAAAAGAATTTAAAATGATTACC   1068
                     |||.|    .||||     ||||||.||.||.|||.||||.|||||.||.
BPUM_0927___y   1019 TGGAGGAGCTTGTCATTAGCATTTCCAACAATGAACTTAAGATGATCACG   1068

BSNT_01676___   1069 TATTTGGGGGGCCTTCTCGGCGGAATTATAGGCGCGATTCAAGCATTGTT   1118
                     |.|||.||.||..||.|.||.|||.|.||.|||||.||.||||||.|.||
BPUM_0927___y   1069 TTTTTAGGCGGTTTTTTAGGAGGATTAATCGGCGCAATCCAAGCAATCTT   1118

BSNT_01676___   1119 TGTCATCCTTTTTTAA   1134
                     |||||..||.||||||
BPUM_0927___y   1119 TGTCACGCTCTTTTAA   1134


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