Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01675 and BPUM_0926
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:10
# Commandline: needle
# -asequence dna-align/BSNT_01675___yheC.1.24716.seq
# -bsequence dna-align/BPUM_0926___yheC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01675___yheC-BPUM_0926___yheC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01675___yheC-BPUM_0926___yheC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01675___yheC
# 2: BPUM_0926___yheC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1345
# Identity: 652/1345 (48.5%)
# Similarity: 652/1345 (48.5%)
# Gaps: 494/1345 (36.7%)
# Score: 1322.5
#
#
#=======================================
BSNT_01675___ 1 ATGA---TAACACTCGGTTTTATG--TCCTTATCCCGCCAGCATGAAGCG 45
|||| .||||.|.|||.||.|| ||.||.||| ..||.||||||.|
BPUM_0926___y 1 ATGACATCAACATTAGGTATTGTGACTCTTTCTCC--GAAGTATGAAGAG 48
BSNT_01675___ 46 GATTATTC---CGCAGAACTGGCCAAAAGAGC-ACCCGAATTCGGCATAC 91
| .|||| || .|..||.||||| ||| .||| |.||.||.
BPUM_0926___y 49 G--CATTCACTCG-TGGGCTAGCCAA---AGCTGCCC-----CTGCTTAT 87
BSNT_01675___ 92 GTTTCA-------TCCGGTTTACACCATTTGATATTTTA---CC------ 125
|.||.| |.||.|||||||||||||| |||| ||
BPUM_0926___y 88 GGTTTAAAGGTTGTTCGTTTTACACCATTTGA---TTTAAAGCCAGCTTC 134
BSNT_01675___ 126 -----TGACACTTTGCGTGTCAAA-------GCATCGGTCTATCATTCGG 163
|||.|| ...|||||| |.|| ||||.|..|||||
BPUM_0926___y 135 AAATATGATAC----AAGGTCAAACTTTTACGGAT-GGTCAAGGATTCG- 178
BSNT_01675___ 164 CCAGCAGCACATGGAACGAAACTGAAATGGCGATTCCAGATTATATTTAT 213
|||||||| |||.|.|.||||||.||.|..|||||.
BPUM_0926___y 179 -CAGCAGCA--------------GAATTTGAGATTCCTGACTTGATTTAC 213
BSNT_01675___ 214 GATCGCTGTTTTTACGGCAAG---GATTCACATTCCCAAAAAGCAAAACC 260
|||||.||..|||| |||| ||..||||.||..|||||||||||||
BPUM_0926___y 214 GATCGATGCCTTTA---CAAGCATGACGCACAATCTAAAAAAGCAAAACC 260
BSNT_01675___ 261 AATCGTTGAGTGGCTCAAAAAATATCCGAAAACGGAATTTAT-----CGG 305
||||.|.||.|||||.|||||.|||||||||||.||.|||.| |
BPUM_0926___y 261 AATCATGGAATGGCTGAAAAAGTATCCGAAAACAGATTTTCTAAATAC-- 308
BSNT_01675___ 306 GCGGGGTCTTCCCGATAAGTGGACCGTCCTTCACGATTTGCAGCAGCACT 355
.|||.||.|..||||...|| |.|| |||.| ||||| ||
BPUM_0926___y 309 ---AGGTATTTCAAATAAAATGA---TGCT-----ATTCG-AGCAG--CT 344
BSNT_01675___ 356 CTGTAATCAATCCCTATATTCCGGAAACGATAAAGGTG-AGCCGCTACGA 404
|.|...|| |||| ||.|| || |||
BPUM_0926___y 345 CCGCCTTC--TCCC-ATCTT----------------TGCAGC-------- 367
BSNT_01675___ 405 ACAAATTCA-----CTCCTTTTTATCCAAAGAAAAAGCCTGCATC----- 444
||.|||.| ||.||..||||..||||| || ||||
BPUM_0926___y 368 -CATATTTACCTGTCTGCTCATTATTAAAAGA-----CC--CATCAGACC 409
BSNT_01675___ 445 --CTTAAACCGGCATTCGGCGCGGGAGGCAGAGGC-GTGATTCT--ATTG 489
|||| |||| |..|.|.|.||.| ||.|||.| |.||
BPUM_0926___y 410 TTCTTA-----GCAT-------GTTAAGGAAAGACGGTTATTGTAAAATG 447
BSNT_01675___ 490 AAGCTGGGC-AAGAAAAACAT--CACAGCTACTTA--TCACA-TCGGAAA 533
.|||.|..| ...||.|.||| .|||.||||||| |||.| ||..|||
BPUM_0926___y 448 CAGCCGCTCTCTCAACACCATGCAACATCTACTTACTTCATATTCTTAAA 497
BSNT_01675___ 534 GGATAA------------GCAGACAAAA----------------ACGTTT 555
.||.|| .||| ||||| ||.|||
BPUM_0926___y 498 AGACAACACTTTCACTGTTCAG-CAAAATCCTGGGCAAGTCATCACATTT 546
BSNT_01675___ 556 TC----CAACCAGACTTCTTTTAAAAC-ATGGTGCAAAAAAGTGCTTCAG 600
|| |.|.|||| |.||.|.| .||||||.||| ||
BPUM_0926___y 547 TCGCGTCCATCAGA-----TATAGAGCGCTGGTGCGAAA---------AG 582
BSNT_01675___ 601 CAT------CAATATTTGCTTCAGCCTTACTTAAACATTCAAGATAAG-G 643
.|| |.||||||.||||| |.|| |||.|||..|| |
BPUM_0926___y 583 TATGTAGGCCGATATTTCCTTCA-----ATTT-----TTCCAGACGAGTG 622
BSNT_01675___ 644 AACAATA--CCCTTGT---------------GATATTCGTCTGTTTATGG 676
|.|||.| .|.||.| |||.||| |||.| |
BPUM_0926___y 623 ATCAAAAAGACTTTTTATTCAATGAAATAAGGATTTTC--CTGAT----G 666
BSNT_01675___ 677 AAA-------AAAACGAAGCAGGTGAATGGAATACAGTCGGAAAGGCAGT 719
||| |||| |.||||||| |||.|.|||.|.|
BPUM_0926___y 667 AAAGATTCACAAAA---------TCAATGGAA-----TCGCATAGGGATT 702
BSNT_01675___ 720 AAGAC----------GCGGA------------------TAC---AAACAC 738
.|.|| ||.|| ||| |||.||
BPUM_0926___y 703 CACACAAAATTACCTGCAGAAAATAGTCATTTAAGCATTACACAAAAAAC 752
BSNT_01675___ 739 GGGCTGCTGGCCAATTTGTCAGGCGGATCTGATGCGCTGACATTTGACT- 787
.|.|| ||| ||..|||| |.|||| |.|| ||.|.|.|
BPUM_0926___y 753 AGCCT-----CCA---TGATAGGC---TTTGAT-CACT---ATATCAATA 787
BSNT_01675___ 788 CCTGGTTTGAAGATATACCGAAAAAACAGCA-AGTGGTTTTACTAGATGA 836
|| |||.| |||| .|||.|| ||.|.||.|..|||||||
BPUM_0926___y 788 CC----TTGCA-----ACCG----CACATCAGAGAGCTTCTTTTAGATGA 824
BSNT_01675___ 837 TGTGTTTTCGATTACCCAATCGGTTCCGTATTATCTTGACGAGC--GC-- 882
|.|....||.||| ||| |.||| ||| || ||
BPUM_0926___y 825 TATAGCATCTATT---CAA--------GCATT-TCT------GCCAGCAT 856
BSNT_01675___ 883 -TATGGA-------------CCGTTG-TTTGAACTCGGTCTTGATATATG 917
|||.|| || ||| ||||||.|||.|.|.||
BPUM_0926___y 857 ATATAGATAAAACCTTTTCTCC-TTGCTTTGAATTCGCTGTAGA------ 899
BSNT_01675___ 918 TCTTGCT-------AAGGACGGGAGAATTTGGATTTTAGATATCAATTCA 960
|||.|| |.|||.||.||..|||..||.|.|.||||.|..|||
BPUM_0926___y 900 -CTTACTCCATACAAGGGAAGGCAGGCTTTTTATATCAAATATAAGATCA 948
BSNT_01675___ 961 AAACCGGGCAGGAAGTCAATCCTGCGTGTCT-----------CTCCCGAG 999
||.|| |.|||.|||| ||.|.|.| ||..|.||
BPUM_0926___y 949 AAGCC-------AGGTCGATCC-GCTTTTTTAAAAGCTTATCCTGACAAG 990
BSNT_01675___ 1000 CAAAAAGAACAGCT--GTA---------CACTTGTCCCCTAAAGCGCTGC 1038
.||||.|||..|.| ||| |||.|| ||.||.||.||
BPUM_0926___y 991 GAAAATGAATTGATTCGTACCATTCTTGCACATG----CTCAATCGATG- 1035
BSNT_01675___ 1039 CAATATCTGTTTTCTGAGCAAAGCCAGA----AAGGAG--TTCTTCCGCG 1082
|||.||.| |||||| |||| ||
BPUM_0926___y 1036 --------------------AAGTCACAACCGAAGGAGGTTTCT----CG 1061
BSNT_01675___ 1083 TGAATCCTAA----------------------------------- 1092
|||| |.||
BPUM_0926___y 1062 TGAA--CAAAAATCGTTGCATCATCGCCACTCATCCCGCAAGTGA 1104
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