Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01664 and BPUM_0918
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:09
# Commandline: needle
# -asequence dna-align/BSNT_01664___yheI.1.24716.seq
# -bsequence dna-align/BPUM_0918___yheI.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01664___yheI-BPUM_0918___yheI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01664___yheI-BPUM_0918___yheI.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01664___yheI
# 2: BPUM_0918___yheI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1869
# Identity: 1249/1869 (66.8%)
# Similarity: 1249/1869 (66.8%)
# Gaps: 222/1869 (11.9%)
# Score: 3886.5
#
#
#=======================================
BSNT_01664___ 1 ATGTTTTCAGTTTTGAAAAAGCTTGGCTGGTTTTTTAAGGCGTAC----- 45
||||||||.||.||.|.|||..|.||||||||.||.|| ||
BPUM_0918___y 1 ATGTTTTCGGTATTTACAAAATTAGGCTGGTTCTTCAA-----ACAAGAG 45
BSNT_01664___ 46 TGGCTGCGCTATACGATTGCGATT---GTCCT-TTTATTAGCAGTCAATG 91
|||..|||.||||||||.||.||| .|||| .|.||| ||.||||
BPUM_0918___y 46 TGGAGGCGTTATACGATCGCCATTACGCTCCTGCTCATT----GTGAATG 91
BSNT_01664___ 92 TCATTGAAATGTTTCCGCCTAAG--CTCTTGGGGAACGCCA-TAGATGAT 138
|..||||||||.|.|| ||.||| .|||||||.| |.|| |.|||||.
BPUM_0918___y 92 TGCTTGAAATGCTACC-CCCAAGATATCTTGGGCA--GGCAGTTGATGAC 138
BSNT_01664___ 139 ATGAAAGCAG----GGGCATTT----ACTGCG-GAAGGGCTGCTGTTTTA 179
|| |.| ||.||.|| |||.|| |.| ||.|||||||
BPUM_0918___y 139 AT-----CCGTTCTGGTCAATTTACAACTTCGAGTA----TGATGTTTTA 179
BSNT_01664___ 180 TATCGGTATC--TTTTTTG--TGCTGACGGCG--GCCGTGTATATCATGT 223
| |||.| ||||||| |||| .||.| |.|||.||||...||.
BPUM_0918___y 180 T----GTAGCCATTTTTTGCTTGCT--AGGTGTCGTCGTCTATACGCTGA 223
BSNT_01664___ 224 CTTATTTTTGGATGCATCAGCTGTTTGGCGGAGCGAATCTGATGGAGAAA 273
|.||.|||||||||.|||||.|.||||||||.||.|||.|.||||||...
BPUM_0918___y 224 CCTACTTTTGGATGTATCAGTTATTTGGCGGCGCAAATGTCATGGAGCGT 273
BSNT_01664___ 274 ATTCTTCGTACGAAGCTGATGGGGCATTTGCTGACTATGTCGCCGCCGTT 323
.|..|.||...|||.||.|||.|.||.||.||.|..|||.|.||..|.||
BPUM_0918___y 274 GTGATGCGCGGGAAACTCATGCGCCACTTACTTAAGATGACACCCACCTT 323
BSNT_01664___ 324 TTAT-----GAAAAAAACCG--AACAGGCGATTTAATGGCACGAGGGACA 366
|||| ||||||||||| ||| |||||||||..|||.|||
BPUM_0918___y 324 TTATGAAAAGAAAAAAACCGGTAAC-------TTAATGGCATTAGGTACA 366
BSNT_01664___ 367 AATGATCTTCAGGCCGTCAG-TTTAACCACAGGGTTTGGCATCTTGACGT 415
||.|||.|..|.||.|| || ||||||.|||||.||||||.|..||||.|
BPUM_0918___y 367 AACGATTTGAATGCTGT-AGCTTTAACGACAGGTTTTGGCGTTCTGACAT 415
BSNT_01664___ 416 TAGTTGATTCTACGATGTTTATGATG---ACGATCTTTTTGACAATGGGG 462
|.||.|||||.|| ||.|||| ||| |.|||||||||.||.|||||.
BPUM_0918___y 416 TGGTGGATTCCAC--TGCTTAT-ATGCTAATGATCTTTTTTACGATGGGA 462
BSNT_01664___ 463 TTTTTGATCAGCTGGAAGCTGACCTT--TGCCGCCATTATCCCGCTTCCA 510
.|...||||||||||||..|.||.|| || ||.||.|||||..|.||.
BPUM_0918___y 463 CTGACGATCAGCTGGAAATTAACGTTAATG--GCGATCATCCCTATGCCG 510
BSNT_01664___ 511 GTCATGGC------GATTGCAATCAGTCTATATGGAAGTAAAATTCATGA 554
.|.||||| |||||| ||.| |||||.|||||.||||||||
BPUM_0918___y 511 CTGATGGCGCTTTTGATTGC-----GTAT-TATGGCAGTAAGATTCATGA 554
BSNT_01664___ 555 GCGGTTTACTGAGGCCCAAAACGCGTTCGGGGCGCTGAATGACAGAGTGC 604
.||.|||||.|..||.|||.|.||.||.||.|...||||.||..|.||||
BPUM_0918___y 555 TCGCTTTACAGTTGCTCAAGATGCATTTGGTGATATGAACGATCGCGTGC 604
BSNT_01664___ 605 TGGAATCTGTTTCAGGCGTGCGGGTGATTCGCGCGTATGTTCAG--GAAA 652
|.|||||.||..|||||||.|||||.||.||..|.|.|||.||| ||||
BPUM_0918___y 605 TTGAATCGGTCGCAGGCGTCCGGGTCATCCGGTCTTTTGTACAGGAGAAA 654
BSNT_01664___ 653 CAAACGATGTTCG-CCGGTTTAATGAAATGACCGCTGATGTTTATCAGAA 701
||| |||| ||| .||.|||..|||||||||.|.||||||.|.|||.||
BPUM_0918___y 655 CAA--GATG-TCGAACGCTTTCGTGAAATGACAGATGATGTATTTCAAAA 701
BSNT_01664___ 702 AAATATGAAAGTGGCTTTTATTGATTCACTGTTTGAGCCGACGGTGAAAC 751
||||||||.||||||..|.|||||||||.|.|||||||||||.||||||.
BPUM_0918___y 702 AAATATGAGAGTGGCGGTCATTGATTCATTATTTGAGCCGACAGTGAAAT 751
BSNT_01664___ 752 TGCTTGTCGGCGCAAGCTATCTGATTGGGCTCGGCTACGGAGCGTTTCTT 801
|.||||||||.|..|||||..|.||.||..|.||.||||||||.|..|||
BPUM_0918___y 752 TACTTGTCGGTGTCAGCTACTTAATAGGAATTGGATACGGAGCCTACCTT 801
BSNT_01664___ 802 GTATTCCGGAACGAGCTGACGCTTGGAGAGTTAGTGTCCTTTAACGTTTA 851
|||||||..|.|||..|.||..||||.|||.|.||..|.||||||||.||
BPUM_0918___y 802 GTATTCCAAAGCGATTTAACCATTGGTGAGCTTGTCGCTTTTAACGTGTA 851
BSNT_01664___ 852 TCTCGGCATGATGATTTGGCCGATGTTTGCAATCGGTGAACTCATTAACG 901
|||.||.||||||||.|||||.||||||||.|||||.||..|.||||||.
BPUM_0918___y 852 TCTTGGGATGATGATCTGGCCAATGTTTGCTATCGGCGAGTTGATTAACA 901
BSNT_01664___ 902 TGATGCAGCGCGGCAATGCGTCATTAGACCGGGTAAATGAAACTCTTTCT 951
|.|||||..|.||.||||||||.|||||||||.|.|||.|.||.||....
BPUM_0918___y 902 TTATGCAAAGAGGAAATGCGTCGTTAGACCGGTTGAATCATACACTCAGC 951
BSNT_01664___ 952 TATGAAACGGATGTGACA---------GATCCAAAACAGCCCGCTGATCT 992
|||.|..|||||||.||| .|.|||||| |..|
BPUM_0918___y 952 TATAAGCCGGATGTTACAAACGCTTCTCAGCCAAAA----------ACTT 991
BSNT_01664___ 993 TA-AAGAGCCTGGAGATATCGTTTTCAGT-----CATGTCAGCTTTACAT 1036
|| ||||||||||.|||| |||||| |||||.|..||||..|
BPUM_0918___y 992 TACAAGAGCCTGGGGATA-----TTCAGTTTGACCATGTGACATTTAGGT 1036
BSNT_01664___ 1037 ATCCAAGCTCAACAAGTGACAAT--CTTCA-GGATATTTCATTTACGGTG 1083
||||||..||..| |.|.||| |||.| .|||.|.||.|||||.||.
BPUM_0918___y 1037 ATCCAACTTCCCC---TAAAAATAACTTAATTGATGTGTCCTTTACCGTT 1083
BSNT_01664___ 1084 CGAAAAGGGCAGACTGTCGGGATTGCAGGTAAAACCGGGAGCGGAAAAAC 1133
|||||.||.|||||..||||.|||.||||.|||||.||.|||||.|||||
BPUM_0918___y 1084 CGAAAGGGACAGACAATCGGAATTACAGGCAAAACAGGAAGCGGTAAAAC 1133
BSNT_01664___ 1134 GACAATTATTAAGCAGCTTTTGCGCCAGTATCCTCTAGGTGAAGGGAGCA 1183
.||.|||.|.||.||||||.|||||||||||||...||||||.||
BPUM_0918___y 1134 AACTATTGTAAAACAGCTTCTGCGCCAGTATCCAACAGGTGATGG----- 1178
BSNT_01664___ 1184 TTACAT-----TTTCAGGTGTACCGATTCAGCAAATCCCTCTTGACCGTC 1228
|.|.|| |.|||||.||.||.||.||..|.|||....|.||
BPUM_0918___y 1179 TCAAATCCTGCTATCAGGAGTCCCAATCCAAGAGATCGAATTGGA----- 1223
BSNT_01664___ 1229 TCCGC-----GGATGGATCGGATATGTGCCTCAGGATCATTTACTGTTTT 1273
||.|| ..||||||||||||.||.||.|||||||||.|.||.||||
BPUM_0918___y 1224 TCAGCTATTTCAATGGATCGGATACGTACCGCAGGATCATATTCTTTTTT 1273
BSNT_01664___ 1274 CACGGACTGTAAAAGAAAATAT---TTT---------ATACGGAAAACAG 1311
|....|.||||.|||||||||| ||| |.|||.||||||.
BPUM_0918___y 1274 CTAAAAGTGTAGAAGAAAATATGCGTTTCGGTCATCGAGACGCAAAACAA 1323
BSNT_01664___ 1312 GATGCAACTGATAAAGAGGTTCAGCAAGCCATTGCCGAAGCACATTTTGA 1361
.||| ||..|| || |||||.||....||.||..|||||||
BPUM_0918___y 1324 AATG--------AATTAG---CA-CAAGCGATCAAAGATGCTTATTTTGA 1361
BSNT_01664___ 1362 AAAAGATTTGCACATGCTTCCGTCC----GGTCTGGAGACAATGGTCGGT 1407
|||||||||.|.| |||..| || ||.||.||.||.||||||||.
BPUM_0918___y 1362 AAAAGATTTACGC---CTTTTG-CCAGAGGGACTCGAAACGATGGTCGGA 1407
BSNT_01664___ 1408 GAAAAAGGCGTGGCACTGTCAGGCGGACAGAAACAAAGAATTTCGATTGC 1457
||||||||.|||||.||.|||||.|||||.||.|||.|||||||.|||||
BPUM_0918___y 1408 GAAAAAGGTGTGGCGCTATCAGGTGGACAAAAGCAACGAATTTCCATTGC 1457
BSNT_01664___ 1458 GAGAGC---ACTCATGGCGAATCCGGAAATCTTGATTCTGGATGATTCAC 1504
|.|.|| |.|.||.| ||||.||.||.||.||.|||||||||||.|
BPUM_0918___y 1458 GCGCGCTTTATTAATAG---ATCCCGACATTTTAATACTGGATGATTCCC 1504
BSNT_01664___ 1505 TTTCCGCTGTAGATGCCAAAACAGAGGCTGCAATTATCAAGAACATC--A 1552
||||.||.||||||||.||||||||..|.||.|||.| ||||.||| |
BPUM_0918___y 1505 TTTCTGCGGTAGATGCAAAAACAGAAACCGCTATTTT--AGAAAATCTAA 1552
BSNT_01664___ 1553 GAGAAAACCGCAAAGGAAAAACGACATTTATTTTGACGCACCGATTATCC 1602
||.||||.||..|.|||||||||||.||||||..|||.||.||..||||.
BPUM_0918___y 1553 GACAAAATCGTCATGGAAAAACGACGTTTATTACGACTCATCGTCTATCA 1602
BSNT_01664___ 1603 GCGGTTGAGCACGCTGACCTGATCCTTGTGATGGACGGCGG-CGTCATTG 1651
||.||||||||.||.||.||.||.|||||.|||||.|..|| || |||.|
BPUM_0918___y 1603 GCTGTTGAGCATGCGGATCTCATACTTGTTATGGAAGAAGGACG-CATCG 1651
BSNT_01664___ 1652 TTGAGAGAGGCACGCATCAAGAACTGCTGGCCA------ATAATGGGTGG 1695
|..|.|..||.||.||..||||.|| || |..||||.|||
BPUM_0918___y 1652 TCCAAAAGGGAACTCACAAAGAGCT------CATTCAGCAAGATGGATGG 1695
BSNT_01664___ 1696 TACCGGGAACAATATGAAAGACAGCAGCTGTTCA---CTGC-GGAAGAAG 1741
||....|||||||.|....|.||||||||| .|| |.|| |||||.||
BPUM_0918___y 1696 TATAAAGAACAATTTCTGCGTCAGCAGCTG-ACAAACCAGCTGGAAGGAG 1744
BSNT_01664___ 1742 GGG--GAGCAGGGGCATGA 1758
||| || |||||||
BPUM_0918___y 1745 GGGATGA-----GGCATGA 1758
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