Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_01657 and BPUM_0916

See Amino acid alignment / Visit BSNT_01657 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:09
# Commandline: needle
#    -asequence dna-align/BSNT_01657___dat.1.24716.seq
#    -bsequence dna-align/BPUM_0916___dat.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01657___dat-BPUM_0916___dat.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01657___dat-BPUM_0916___dat.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01657___dat
# 2: BPUM_0916___dat
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 932
# Identity:     573/932 (61.5%)
# Similarity:   573/932 (61.5%)
# Gaps:         157/932 (16.8%)
# Score: 1608.0
# 
#
#=======================================

BSNT_01657___      1 ATGAAGGTTTTAGT-CAATGGCCGGCTGATTGGGCGCAGTGAAGCATCAA     49
                     |||||.||.|| || .||||.|     ||||    .||.||||     ||
BPUM_0916___d      1 ATGAAAGTATT-GTATAATGAC-----GATT----TCATTGAA-----AA     35

BSNT_01657___     50 --------------TCGATTTGGAAGATCGCGGTTATCAGTTTGGTGACG     85
                                   |.|||.|.|||||..|.||.|||||.||||||||.|
BPUM_0916___d     36 AGAGGATGCTCGTGTTGATATTGAAGACAGAGGCTATCAATTTGGTGATG     85

BSNT_01657___     86 GCATCTATGAAGTGATCAGGGTGTACAA-AGGAGTATTGTTCGGTTTACG    134
                     |..|||||||.||.|||.|.||.||||| .|||.|.|      ||||||.
BPUM_0916___d     86 GTGTCTATGAGGTCATCCGTGTATACAATGGGACTTT------GTTTACA    129

BSNT_01657___    135 T-----GAGCATGTAGAGCGTTTTTTCAGAAGTGCTGCTGAAATCGGAAT    179
                     |     ||||||..|||||||.|.||||..|||||....||||||||.| 
BPUM_0916___d    130 TTAAAAGAGCATACAGAGCGTCTGTTCAAGAGTGCAAAAGAAATCGGCA-    178

BSNT_01657___    180 TTCA-CTGCCA--TTCAGTATAGAAGATCTCGAGTGGGACCTGCAAA---    223
                     |||| ||.|.|  |.||||||  .||||.|.||        .|.|||   
BPUM_0916___d    179 TTCATCTTCAAGGTGCAGTAT--CAGATATGGA--------AGAAAAATT    218

BSNT_01657___    224 -----AGCTTGT----------------ACAGGAAAATGCGGTCAGTGAG    252
                          ||||.||                ||||    |||      ||   
BPUM_0916___d    219 AAAACAGCTCGTCGCCCATAACCAATTAACAG----ATG------GT---    255

BSNT_01657___    253 GGAGCGGTATACATTCAGACAACAAGAGGTGTGGCCCCGCGAAAACACCA    302
                     |||   ||.||.|||||....||..|.||.||.||.||.||.|||||.||
BPUM_0916___d    256 GGA---GTGTATATTCAAGTGACTCGTGGCGTCGCACCTCGTAAACATCA    302

BSNT_01657___    303 GTATG--AAGCCGGCCTCGAGCCGCAGACTACTGCCTATACGTTTACGGT    350
                     .||||  ||..|  .|||...||.||.|..||.||.|||||||||...||
BPUM_0916___d    303 ATATGGAAATTC--TCTCACTCCTCAAATCACAGCATATACGTTTCAAGT    350

BSNT_01657___    351 GAAAAAACCGGAGCAAGAGCAGGCATACGGAGTGGCGGCCATTACAGATG    400
                     ||||||.||.|..||.||||||.||...||.||...||||||.|.|..||
BPUM_0916___d    351 GAAAAAGCCTGTTCATGAGCAGACAGCTGGTGTAAAGGCCATCATATCTG    400

BSNT_01657___    401 AGGATCTTCGCTGGTTAAGATGTGATATCAAAAGTCTGAATTTACTGTAT    450
                     ||||.|||||||||||||||||||||||.|||||..|.|||.|..|.|||
BPUM_0916___d    401 AGGACCTTCGCTGGTTAAGATGTGATATTAAAAGCTTAAATCTCTTATAT    450

BSNT_01657___    451 AATGTCATGACGAAGCAAAAGGCCTATGAAGCGGGAGCATTTGAAGCCAT    500
                     ||.||||||...||.||.||.||.|.||||||.||.||||||||||||||
BPUM_0916___d    451 AACGTCATGGAAAAACAGAAAGCATCTGAAGCTGGTGCATTTGAAGCCAT    500

BSNT_01657___    501 TTTACTTAGGGACGGCGTTGTTACGGAGGGTACATCCTCTAACGTTTATG    550
                     |.|..|||||||.||..||||.||.||||||||.|||||.||.||.||||
BPUM_0916___d    501 TCTCATTAGGGATGGTTTTGTGACAGAGGGTACCTCCTCGAATGTATATG    550

BSNT_01657___    551 CCGTTATCAACGGCACGGTGCGAACACATCCGGCTAACCGGCTCATTCTC    600
                     ||||.||..|.|||..|.|.||.||||||||.||.|||....|.|||||.
BPUM_0916___d    551 CCGTCATTGATGGCGTGATTCGCACACATCCCGCAAACAATTTAATTCTA    600

BSNT_01657___    601 AATGGAATTACACGGATGAA----TATTTTAGGACTGATTGAGAAGAA-T    645
                     |||||.|||||.||.| |||    |.||..||.|     ||.|||||| .
BPUM_0916___d    601 AATGGTATTACCCGTA-GAAAGCTTCTTGAAGTA-----TGTGAAGAAGA    644

BSNT_01657___    646 GGGA-------TTAAACTGGATGAGACTCCTGTCAGTGAAGAAGAGTTGA    688
                     ||||       |||||      ||.||.|.|.|||||.||||||||.|| 
BPUM_0916___d    645 GGGAAGCAGTGTTAAA------GAAACGCGTATCAGTAAAGAAGAGCTG-    687

BSNT_01657___    689 AACAG---GCGGAAGAGATCTTTATTTCGTCAACGACGGCAGAAATTATT    735
                       |.|   |||.|.||.|||||.||....||.|||||.||.|||.|.|||
BPUM_0916___d    688 --CTGGGAGCGCAGGAAATCTTCATCAGCTCGACGACTGCTGAAGTCATT    735

BSNT_01657___    736 CCGGTTG-TGACGCTCGATGGACAATCGGTCGG---AAGCGGGAAACCCG    781
                     |||.||| ||| ..|.|||||.||..|.||.||   |.|||   ..||.|
BPUM_0916___d    736 CCGATTGTTGA-AATTGATGGTCAGCCAGTAGGTGAAGGCG---TTCCAG    781

BSNT_01657___    782 GACCGGTGACCAAACAGCTTC----AGGCTGCTTTTCAAGAAAGCATTCA    827
                     ||..|.|.||.||||...|.|    ||||    |||||..|||..|||.|
BPUM_0916___d    782 GAGAGTTAACAAAACGTATACAAGAAGGC----TTTCAGCAAAAAATTAA    827

BSNT_01657___    828 ACAGG---CTGCTAGCAT-------TTCATAA    849
                     |||||   .|| .|||||       |||.|||
BPUM_0916___d    828 ACAGGAAAGTG-AAGCATCAATTTCTTCGTAA    858


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.