Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01657 and BPUM_0916
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:09
# Commandline: needle
# -asequence dna-align/BSNT_01657___dat.1.24716.seq
# -bsequence dna-align/BPUM_0916___dat.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01657___dat-BPUM_0916___dat.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01657___dat-BPUM_0916___dat.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01657___dat
# 2: BPUM_0916___dat
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 932
# Identity: 573/932 (61.5%)
# Similarity: 573/932 (61.5%)
# Gaps: 157/932 (16.8%)
# Score: 1608.0
#
#
#=======================================
BSNT_01657___ 1 ATGAAGGTTTTAGT-CAATGGCCGGCTGATTGGGCGCAGTGAAGCATCAA 49
|||||.||.|| || .||||.| |||| .||.|||| ||
BPUM_0916___d 1 ATGAAAGTATT-GTATAATGAC-----GATT----TCATTGAA-----AA 35
BSNT_01657___ 50 --------------TCGATTTGGAAGATCGCGGTTATCAGTTTGGTGACG 85
|.|||.|.|||||..|.||.|||||.||||||||.|
BPUM_0916___d 36 AGAGGATGCTCGTGTTGATATTGAAGACAGAGGCTATCAATTTGGTGATG 85
BSNT_01657___ 86 GCATCTATGAAGTGATCAGGGTGTACAA-AGGAGTATTGTTCGGTTTACG 134
|..|||||||.||.|||.|.||.||||| .|||.|.| ||||||.
BPUM_0916___d 86 GTGTCTATGAGGTCATCCGTGTATACAATGGGACTTT------GTTTACA 129
BSNT_01657___ 135 T-----GAGCATGTAGAGCGTTTTTTCAGAAGTGCTGCTGAAATCGGAAT 179
| ||||||..|||||||.|.||||..|||||....||||||||.|
BPUM_0916___d 130 TTAAAAGAGCATACAGAGCGTCTGTTCAAGAGTGCAAAAGAAATCGGCA- 178
BSNT_01657___ 180 TTCA-CTGCCA--TTCAGTATAGAAGATCTCGAGTGGGACCTGCAAA--- 223
|||| ||.|.| |.|||||| .||||.|.|| .|.|||
BPUM_0916___d 179 TTCATCTTCAAGGTGCAGTAT--CAGATATGGA--------AGAAAAATT 218
BSNT_01657___ 224 -----AGCTTGT----------------ACAGGAAAATGCGGTCAGTGAG 252
||||.|| |||| ||| ||
BPUM_0916___d 219 AAAACAGCTCGTCGCCCATAACCAATTAACAG----ATG------GT--- 255
BSNT_01657___ 253 GGAGCGGTATACATTCAGACAACAAGAGGTGTGGCCCCGCGAAAACACCA 302
||| ||.||.|||||....||..|.||.||.||.||.||.|||||.||
BPUM_0916___d 256 GGA---GTGTATATTCAAGTGACTCGTGGCGTCGCACCTCGTAAACATCA 302
BSNT_01657___ 303 GTATG--AAGCCGGCCTCGAGCCGCAGACTACTGCCTATACGTTTACGGT 350
.|||| ||..| .|||...||.||.|..||.||.|||||||||...||
BPUM_0916___d 303 ATATGGAAATTC--TCTCACTCCTCAAATCACAGCATATACGTTTCAAGT 350
BSNT_01657___ 351 GAAAAAACCGGAGCAAGAGCAGGCATACGGAGTGGCGGCCATTACAGATG 400
||||||.||.|..||.||||||.||...||.||...||||||.|.|..||
BPUM_0916___d 351 GAAAAAGCCTGTTCATGAGCAGACAGCTGGTGTAAAGGCCATCATATCTG 400
BSNT_01657___ 401 AGGATCTTCGCTGGTTAAGATGTGATATCAAAAGTCTGAATTTACTGTAT 450
||||.|||||||||||||||||||||||.|||||..|.|||.|..|.|||
BPUM_0916___d 401 AGGACCTTCGCTGGTTAAGATGTGATATTAAAAGCTTAAATCTCTTATAT 450
BSNT_01657___ 451 AATGTCATGACGAAGCAAAAGGCCTATGAAGCGGGAGCATTTGAAGCCAT 500
||.||||||...||.||.||.||.|.||||||.||.||||||||||||||
BPUM_0916___d 451 AACGTCATGGAAAAACAGAAAGCATCTGAAGCTGGTGCATTTGAAGCCAT 500
BSNT_01657___ 501 TTTACTTAGGGACGGCGTTGTTACGGAGGGTACATCCTCTAACGTTTATG 550
|.|..|||||||.||..||||.||.||||||||.|||||.||.||.||||
BPUM_0916___d 501 TCTCATTAGGGATGGTTTTGTGACAGAGGGTACCTCCTCGAATGTATATG 550
BSNT_01657___ 551 CCGTTATCAACGGCACGGTGCGAACACATCCGGCTAACCGGCTCATTCTC 600
||||.||..|.|||..|.|.||.||||||||.||.|||....|.|||||.
BPUM_0916___d 551 CCGTCATTGATGGCGTGATTCGCACACATCCCGCAAACAATTTAATTCTA 600
BSNT_01657___ 601 AATGGAATTACACGGATGAA----TATTTTAGGACTGATTGAGAAGAA-T 645
|||||.|||||.||.| ||| |.||..||.| ||.|||||| .
BPUM_0916___d 601 AATGGTATTACCCGTA-GAAAGCTTCTTGAAGTA-----TGTGAAGAAGA 644
BSNT_01657___ 646 GGGA-------TTAAACTGGATGAGACTCCTGTCAGTGAAGAAGAGTTGA 688
|||| ||||| ||.||.|.|.|||||.||||||||.||
BPUM_0916___d 645 GGGAAGCAGTGTTAAA------GAAACGCGTATCAGTAAAGAAGAGCTG- 687
BSNT_01657___ 689 AACAG---GCGGAAGAGATCTTTATTTCGTCAACGACGGCAGAAATTATT 735
|.| |||.|.||.|||||.||....||.|||||.||.|||.|.|||
BPUM_0916___d 688 --CTGGGAGCGCAGGAAATCTTCATCAGCTCGACGACTGCTGAAGTCATT 735
BSNT_01657___ 736 CCGGTTG-TGACGCTCGATGGACAATCGGTCGG---AAGCGGGAAACCCG 781
|||.||| ||| ..|.|||||.||..|.||.|| |.||| ..||.|
BPUM_0916___d 736 CCGATTGTTGA-AATTGATGGTCAGCCAGTAGGTGAAGGCG---TTCCAG 781
BSNT_01657___ 782 GACCGGTGACCAAACAGCTTC----AGGCTGCTTTTCAAGAAAGCATTCA 827
||..|.|.||.||||...|.| |||| |||||..|||..|||.|
BPUM_0916___d 782 GAGAGTTAACAAAACGTATACAAGAAGGC----TTTCAGCAAAAAATTAA 827
BSNT_01657___ 828 ACAGG---CTGCTAGCAT-------TTCATAA 849
||||| .|| .||||| |||.|||
BPUM_0916___d 828 ACAGGAAAGTG-AAGCATCAATTTCTTCGTAA 858
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