Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01646 and BPUM_0906
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:08
# Commandline: needle
# -asequence dna-align/BSNT_01646___yhdT.1.24716.seq
# -bsequence dna-align/BPUM_0906___yhdT.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01646___yhdT-BPUM_0906___yhdT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01646___yhdT-BPUM_0906___yhdT.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01646___yhdT
# 2: BPUM_0906___yhdT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1504
# Identity: 950/1504 (63.2%)
# Similarity: 950/1504 (63.2%)
# Gaps: 239/1504 (15.9%)
# Score: 2724.5
#
#
#=======================================
BSNT_01646___ 1 ATGGACGATATTGACAGTCTGATTTTAATTGGCGTGCTCATTGCTTTAAC 50
|||||||||||||..|.|||||.|.||.|.||.||..|.|||||||||||
BPUM_0906___y 1 ATGGACGATATTGTTAATCTGAGTATAGTCGGTGTTTTGATTGCTTTAAC 50
BSNT_01646___ 51 CGCGTTTTTCGTTGCAAGCGAGTTTGCGATTGTTAGAGTGAGGAGATCCA 100
.||.||.||.||||||...||.|||||.||.||.|..|||||.||.||.|
BPUM_0906___y 51 AGCTTTCTTTGTTGCATCTGAATTTGCCATCGTAAAGGTGAGAAGCTCAA 100
BSNT_01646___ 101 GAATAGATCAGCTTATCACAGAAGGAAACAAACGGGCGATACTCGC---- 146
||||.|||||||||.|..|.|||||...||||..|||.||..|.||
BPUM_0906___y 101 GAATTGATCAGCTTGTTGCCGAAGGGTCCAAAAAGGCCATGGTGGCGAAA 150
BSNT_01646___ 147 AAGGCGTGTCATTACAGATTTGGATGAATATTTATCCGCATCCCAGCTGG 196
||| |||.||| ||....|||||||||||||.||.||.|..|||||.|
BPUM_0906___y 151 AAG--GTGACAT--CAAGGCTGGATGAATATTTGTCAGCCTGTCAGCTTG 196
BSNT_01646___ 197 GCATTACATTGACATCAATCGGGCTTGGCGTACTGGGTG--------AGC 238
|.|||||..|||||||| |||||..|| ||||| |||
BPUM_0906___y 197 GTATTACTGTGACATCA------CTTGGTTTA--GGGTGGATTGGTAAGC 238
BSNT_01646___ 239 CGGCCTTTGAACGGCTGCTGCATCCACTGTTTGAACCGCTCG-GCTTGCC 287
|.| ||.|.||.| .||| |||| |.||| |.||
BPUM_0906___y 239 CAG-CTGTAAAAG-----------AACT-TTTG----GTTCGAGGTT--- 268
BSNT_01646___ 288 AGACTCGGTTTCACA--------TG----------CAGCCTCTTTTGCAG 319
|.|||||.||| || ||||||..|.| |||
BPUM_0906___y 269 ----TTGGTTTGACAAACATTCCTGATTCAGTAATCAGCCTGATCT-CAG 313
BSNT_01646___ 320 ------TCGCGTACGGCT-TGATCACGTTCCTGCACGTTGTTGTAGGTGA 362
|.||||.| .|| |.||.||.||..||||.||.||.||.|||||
BPUM_0906___y 314 CAACACTTGCGTTC-TCTATTATTACCTTTTTGCATGTAGTCGTCGGTGA 362
BSNT_01646___ 363 ACTGGCCCCGAAAACGGTCGCGATTCAAAAGGCAGAACAGCTGA--CTTT 410
.||.||.||.|||||..|.||||||||||||||.|||.|..||| |||
BPUM_0906___y 363 GCTTGCACCAAAAACACTAGCGATTCAAAAGGCGGAAAAAATGACGCTT- 411
BSNT_01646___ 411 ACTGATAG-CGGGCCCTTTGCGTTTATTTTATTTGCTCCTGTTTCCGTTT 459
||.|.| |.||.||..|.|.|..|||||||.|.||..||||.||.||.
BPUM_0906___y 412 --TGGTTGTCAGGTCCGCTACATGCATTTTATATCCTAATGTTCCCTTTC 459
BSNT_01646___ 460 ATTTGGATCCTCAATGGATCGGCGCGGCTTTT----------ATGCGG-- 497
||||...|..|.||.||.||.||.||..|||| ||| ||
BPUM_0906___y 460 ATTTATGTGTTAAACGGGTCAGCCCGTGTTTTAACCAAAATGATG-GGCA 508
BSNT_01646___ 498 --GATGTTCGGTTTGAAGCCTGCGTCAGAACATGATGGTTCCCATTCTGA 545
|||.|..|||.|||| ..|||||| ||||||||||||
BPUM_0906___y 509 TCGATATGGGGTCTGAA-------AAAGAACA------TTCCCATTCTGA 545
BSNT_01646___ 546 GGAAGAACTCAGGATGCTGTTATCTGAGAGTTTAAAAAACGGAGAGATTA 595
.||||||.|.|.|||..|..||||||||||.||||||||.||.||.||.|
BPUM_0906___y 546 AGAAGAATTAAAGATTTTACTATCTGAGAGCTTAAAAAATGGGGAAATCA 595
BSNT_01646___ 596 ATCCGTCTGAATATAAATATGTGAATAAGATTTTTGAATTTGATAATCGG 645
|.|||||.||||||||.|||.|||||||.|||||.||.|||||||||||.
BPUM_0906___y 596 ACCCGTCAGAATATAATTATATGAATAAAATTTTCGACTTTGATAATCGA 645
BSNT_01646___ 646 ATCGCCAAAGAAATTATGATACCGCGGAAGGAAATGGCTGCTGTGTCAAC 695
||.||||.|||.||.|||.|.|||||||..||||| .||||.||..
BPUM_0906___y 646 ATTGCCAGAGAGATCATGGTCCCGCGGAGAGAAAT-----TTGTGCCATT 690
BSNT_01646___ 696 TGAGATGACGATGGCCG--AGATG-------CTTGAAGTCATGCTGAAGG 736
..|||.|| .|| |||| ||||| ||..| |||||..|.|||
BPUM_0906___y 691 CCAGAAGA-TAT-GCCGCTAGATGAAATCCTCTCCA--TCATGACGCAGG 736
BSNT_01646___ 737 AAAAATACACGCGCTGGCCAG-----TCACAGATGGAGACAAAGA-CAGT 780
|.||.||.||.||||..||.| ||| ||.||.||||| || |
BPUM_0906___y 737 AGAAGTATACACGCTTTCCCGTGTTTTCA-----GGCGATAAAGATCA-T 780
BSNT_01646___ 781 GTGATCGGTTTGGTCAATACGAAGCATTTGTTTTCTGATTTGCTGTTTAT 830
||.|||||..||.|.||.|..|||||..|.|||.|.|||.| |||.|||
BPUM_0906___y 781 GTCATCGGCATGCTGAACAAAAAGCAGCTCTTTGCAGATCT--TGTGTAT 828
BSNT_01646___ 831 GACAGAAGAA---GAACGAATGAAGAT-GACGATCCATCCGTATGTGAGG 876
.| ||.|||| ||.|.|.||||||| .|.||| |||.|....
BPUM_0906___y 829 CA-AGGAGAAAAGGATCAATTGAAGATCCAAGAT-------TATATATAT 870
BSNT_01646___ 877 CCGGTCATCGAAGTGATTGAAACGATCCCGGTTCATGA-CTTGCTGATTA 925
||.||.||.|||||.|||||.|||||.||..||||.|| ||| ||..|.|
BPUM_0906___y 871 CCAGTGATTGAAGTCATTGATACGATTCCTATTCAGGAGCTT-CTCGTCA 919
BSNT_01646___ 926 AAATGCAGCGCGAGCGCATTCATATGGCTATATTGTCGGATGAATACGGA 975
|.|||||.|||||.||.||.||.|||||.||.||..|.||||||||.||.
BPUM_0906___y 920 AGATGCAACGCGATCGAATGCACATGGCGATTTTAACCGATGAATATGGC 969
BSNT_01646___ 976 GGAACCTCGGGACTTGTGACGACAGAGGATATTCTTGAGGAAATTGTCGG 1025
|||||.||.||||||||.||.|||||.||||||.|.||.||.|||||.||
BPUM_0906___y 970 GGAACGTCTGGACTTGTCACAACAGAAGATATTTTAGAAGAGATTGTTGG 1019
BSNT_01646___ 1026 AGAGATCAGAGATGAATTTGATGAAGATGAACAGCCGCTGATCCAAA--- 1072
|||.||..||||||||||.|||||||||||.||||||.|.||.||||
BPUM_0906___y 1020 AGATATTCGAGATGAATTCGATGAAGATGAGCAGCCGGTTATTCAAAAAA 1069
BSNT_01646___ 1073 -AGCTTGGCGACGGCCATTATGTGATGGATGG-AAAGGTTCGGATC-GAT 1119
||| |||....||||||||..|.||||| |||| || |||
BPUM_0906___y 1070 GAGC----CGATCATCATTATGTTTTAGATGGCAAAG-------TCAGAT 1108
BSNT_01646___ 1120 CAGGTGA---ACAGCCTTCTTGGCGCATCGA-----------TTCAAGAA 1155
.||..|| |||...| ||| ||||| .|.|.|||
BPUM_0906___y 1109 TAGAGGAAGTACAAGAT--TTG----ATCGAAATGTCATATCATGATGAA 1152
BSNT_01646___ 1156 GACGTCGATACGATCGGCGGGCTGATATTAAAAGAAAACATCGATAT-TG 1204
||..|.|||||.||.||||||||.||.|||||.||.|||||.||||| .|
BPUM_0906___y 1153 GAAATTGATACAATAGGCGGGCTCATCTTAAATGAGAACATTGATATCCG 1202
BSNT_01646___ 1205 AGGCTGGTGAATCCATTCGCATCGGTT---CATATAC-GATAAAGGTGCT 1250
| |..||..|||||||| .||| || .||||.| |||.|||||..|
BPUM_0906___y 1203 A-GAAGGACAATCCATT--TATC--TTGACGATATTCGGATGAAGGTCTT 1247
BSNT_01646___ 1251 GAAGATGGACGGCCGATTAATCAAGCAAATCGATATAAAAGAAGAA--GC 1298
|.|||||||.||.||.|...|.||..|.||||||.| |||||| ||
BPUM_0906___y 1248 GGAGATGGATGGACGCTATGTGAAAAAGATCGATTT----GAAGAAAGGC 1293
BSNT_01646___ 1299 ----CAGCAACACA-ACCGGGATTACGGCGCAC-----------CACAAG 1332
|..|||||.| |..||.|.||| .||||| .|.|||
BPUM_0906___y 1294 GTCACGTCAACAGATAAAGGAAATAC-ACGCACAGGGCTTGATATAAAAG 1342
BSNT_01646___ 1333 CTGCCGCTGCCTGAGCCTGTGATGCTGAACAGTGCAACCTTGAGCGAGAA 1382
.||||||| |.||....||| |.|| |||||||||||.||
BPUM_0906___y 1343 -AGCCGCTG--TTAGTAAATGA--------AATG--ACCTTGAGCGAAAA 1379
BSNT_01646___ 1383 ATAA 1386
||||
BPUM_0906___y 1380 ATAA 1383
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