Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01638 and BPUM_0902

See Amino acid alignment / Visit BSNT_01638 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:08
# Commandline: needle
#    -asequence dna-align/BSNT_01638___sigM.1.24716.seq
#    -bsequence dna-align/BPUM_0902___sigM.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01638___sigM-BPUM_0902___sigM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01638___sigM-BPUM_0902___sigM.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01638___sigM
# 2: BPUM_0902___sigM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 496
# Identity:     401/496 (80.8%)
# Similarity:   401/496 (80.8%)
# Gaps:           8/496 ( 1.6%)
# Score: 1596.0
# 
#
#=======================================

BSNT_01638___      1 GTGACGATCGATGAAATTTACCAAATGTACATGAATGATGTTTACAGGTT     50
                     ||||||||||||||||||||.||||||||.|||||.||||||||||||||
BPUM_0902___s      1 GTGACGATCGATGAAATTTATCAAATGTATATGAACGATGTTTACAGGTT     50

BSNT_01638___     51 CCTGCTCTCCATGACAAAAGACAAGCATCTTGCTGAAGACTTGCTGCAGG    100
                     .|||||||||||||||||||||||.|||.|.||.||||||||..||||||
BPUM_0902___s     51 TCTGCTCTCCATGACAAAAGACAAACATTTGGCAGAAGACTTATTGCAGG    100

BSNT_01638___    101 AAACCTTTATGCGGGCATACATACACATTCACTCCTATGATCACAGCAAA    150
                     |||||||||||||.||.||.|||||.|||||.|||||.||.||.||||||
BPUM_0902___s    101 AAACCTTTATGCGTGCTTATATACATATTCATTCCTACGACCATAGCAAA    150

BSNT_01638___    151 GTAAAGCCCTGGCTTTTTCAAGTGGCGCGAAACGCCTTCATTGATTACGT    200
                     ||.||.||.|||.|.|||||.|||||.|||||.||.||.||||||||.||
BPUM_0902___s    151 GTGAAACCTTGGTTATTTCAGGTGGCACGAAATGCTTTTATTGATTATGT    200

BSNT_01638___    201 CAGAAAGCATAAGAAAGAAGTAACCATTTCTGATGA-CTTAATCGGAAGC    249
                     |||.||.|||||.||||||||.|||||.||.||||| ||| ||.||..||
BPUM_0902___s    201 CAGGAAACATAAAAAAGAAGTGACCATATCGGATGATCTT-ATTGGCGGC    249

BSNT_01638___    250 CTCTTTCAAA-ATGCTGTTCAAAGTCCTGCCCATCAGGTAGAGATAAAGG    298
                     ||.||.|||| || ||||.|||||.|||||..|.|||||.||.|||||.|
BPUM_0902___s    250 CTTTTACAAACAT-CTGTACAAAGCCCTGCTGAACAGGTTGAAATAAAAG    298

BSNT_01638___    299 AAGTGCTGA--CTGGTTATATGTCCGAGCTCCCCGATAATTATCGGGAGG    346
                     ||||.||.|  .||  |||.||....||||.||.|||||.||...|||.|
BPUM_0902___s    299 AAGTCCTCAACATG--TATTTGGAACAGCTTCCAGATAACTACAAGGAAG    346

BSNT_01638___    347 CCTTAACGCTATATTATTTAAAAGAGTTAAACTACAAAGAAGCATCCCAT    396
                     |.||.||..|.||||||||||||||..|.||.|||||.|||||||||.|.
BPUM_0902___s    347 CGTTGACATTGTATTATTTAAAAGAACTGAATTACAAGGAAGCATCCAAG    396

BSNT_01638___    397 ATTATGAATATTTCAGAGGCGAATTTTAAAAGTGTTTTATTTCGTGCCAG    446
                     .|.|||||||||.|.||.||.||||||||||||||||||||||||||.||
BPUM_0902___s    397 GTCATGAATATTACTGAAGCAAATTTTAAAAGTGTTTTATTTCGTGCAAG    446

BSNT_01638___    447 ACAGCGGCTGAAAGCACTTTATAATAGAGGTGTTAATGATGAATGA    492
                     .|||||.||.|||||||||||.||.|||||||||||||||||||||
BPUM_0902___s    447 GCAGCGCCTAAAAGCACTTTACAACAGAGGTGTTAATGATGAATGA    492


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