Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01620 and BPUM_0896
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:08
# Commandline: needle
# -asequence dna-align/BSNT_01620___phoA.1.24716.seq
# -bsequence dna-align/BPUM_0896___phoA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01620___phoA-BPUM_0896___phoA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01620___phoA-BPUM_0896___phoA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01620___phoA
# 2: BPUM_0896___phoA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1503
# Identity: 911/1503 (60.6%)
# Similarity: 911/1503 (60.6%)
# Gaps: 264/1503 (17.6%)
# Score: 2560.0
#
#
#=======================================
BSNT_01620___ 1 ATGAGTTTGTTTCAAAATAT-GAAATC-AAAACTTCTGCCAATCGCCGCT 48
||||||.|| ||.||||..| ||||.| ||||...||| ||.|.||.||.
BPUM_0896___p 1 ATGAGTGTG-TTGAAAAGCTCGAAAACGAAAATAGCTG-CAGTGGCGGCA 48
BSNT_01620___ 49 GTTTCTGTCCTTACAGCTGGAGTCTTTGCCGGAGCTGA----------GC 88
|..|||||.||..|...|||..|.|||.|.|||..||| ||
BPUM_0896___p 49 GCATCTGTGCTATCGATTGGCATTTTTTCAGGAATTGAATTTGGACAGGC 98
BSNT_01620___ 89 TGCAGCAAACAGAAAAGGCCAGCGCCAAAAAACAAGACAAAGCTGAGAT- 137
|| || |||| |||.|.|.|||||.|||.|||| |.||
BPUM_0896___p 99 TG------AC---AAAG--CAGAGGCTAAAAAGAAGCCAAA----AAATG 133
BSNT_01620___ 138 -----CAGAAATGTCATTGTGATGATAGGCGACGGCATGGGGACGCCTTA 182
|| ||||||.||||||.||||.||.||.||||||||.||.||.||
BPUM_0896___p 134 ACGTGCA-AAATGTGATTGTGCTGATCGGGGATGGCATGGGAACACCGTA 182
BSNT_01620___ 183 CATAAGAGCCTACCGTTCCATGAAAAATAACGGTGACACACCGAATAACC 232
..|...|.|.||||||||..|.||..|.|||||.| |||
BPUM_0896___p 183 TCTTTCAACTTACCGTTCATTTAAGCACAACGGAG------------ACC 220
BSNT_01620___ 233 ---CGAAGTTAACAGAATTTGACCGGAACCTGACAGGCATGATGATGACG 279
|.|||..|||||..|||||||...||||.||||||||| .||.|..
BPUM_0896___p 221 TTTCAAAGCAAACAGCGTTTGACCCTTACCTCACAGGCATG--CATAAAA 268
BSNT_01620___ 280 CATCCGGATGACCCTGACTAT---------AATATTACAGATTCAGCAGC 320
||| |||||.|..|| |||||.||.|||||||||||
BPUM_0896___p 269 CAT-------ACCCTAATGATTCGAAAAGCAATATCACGGATTCAGCAGC 311
BSNT_01620___ 321 AGCCGGAACAGCATTAGCGACAGGCGTTAAGACATATAACAATGCAATTG 370
.||.||.|||||..|.||.||.||....|||||.||.||||||||||||.
BPUM_0896___p 312 GGCTGGTACAGCTATGGCAACTGGTAAAAAGACTTACAACAATGCAATTA 361
BSNT_01620___ 371 GCGTCGATAAAAACGGGAAAAAAGTGAAATCTGTACTTGAAGAGGCCAAA 420
|.||..||||||||||.||||||.|.|||.|.|||||.|||||.||.|||
BPUM_0896___p 362 GTGTAAATAAAAACGGCAAAAAATTAAAAACAGTACTAGAAGAAGCAAAA 411
BSNT_01620___ 421 CAGCAAGGCAAGTCAACAGGGCTTGTCGCCACGTCTGAAATTAAC-CACG 469
|.|.|.||.||.||.||.||||||||||..||.|||| ||||||| .|.|
BPUM_0896___p 412 CGGAAGGGAAAATCTACGGGGCTTGTCGTGACCTCTG-AATTAACGAATG 460
BSNT_01620___ 470 CCACTCCAGCCGCATATGGCG-CCCACAATGAATCACGGAAAAACATGGA 518
|.||.||.||.||.||| ||| |.||..|||.|||..|.|||||||
BPUM_0896___p 461 CTACCCCTGCTGCGTAT-GCGACTCATGATGTATCGAGAAAAAACA---- 505
BSNT_01620___ 519 CCAAATCGCCAACAGCTAT-----ATG--------GATGACAAAAT---A 552
||.||||.|| ||| |||||.||||| |
BPUM_0896___p 506 ---------CAGCAGCCATCGCTGATGATTTCTTCGATGAAAAAATCGGA 546
BSNT_01620___ 553 AAAGGCAAACATAAAATAGACGTGCTGCTCGGCGGCGGAAAATCTT--AT 600
||| .|.||||.|.|.||.||..||||.|||||.|| |.||.| ||
BPUM_0896___p 547 AAA---CAGCATACAGTCGATGTCATGCTTGGCGGAGG--ACTCGTCGAT 591
BSNT_01620___ 601 TTTAACCGCAAGGACAGAAACTTGACAAAGGAATTCAAACAAGCCGGCTA 650
|||..|||.|||||..|..|.||.||.||||||||.||.|.|||.||.||
BPUM_0896___p 592 TTTGTCCGGAAGGATCGGGATTTAACGAAGGAATTTAAGCGAGCAGGATA 641
BSNT_01620___ 651 CAGCTATGTGACAACTAAACAAGCATTGAAGAAAAATAAAGATCAGCAGG 700
....|||||.||.|.||||.|.|..||..|..||||.||..|.||..|||
BPUM_0896___p 642 TGATTATGTCACCAATAAAGATGACTTACAACAAAACAAGAACCAAAAGG 691
BSNT_01620___ 701 TGCTCGGGCTTTTCGCAGAGGGAGGGCTTGCTAAGGCGCTCGACCGTGAC 750
||.|.||..||||.|||||..|.||.||||.|||.|||.|.||.|||||.
BPUM_0896___p 692 TGTTAGGCATTTTTGCAGATAGCGGCCTTGATAAAGCGATTGATCGTGAT 741
BSNT_01620___ 751 AGCAAAACACCGTCTCTCAAAGACATGACGGTTTCAGCAATTGATCGCCT 800
|..||.||.||.||.||..|||||||||||...|||||.|||.|.|..||
BPUM_0896___p 742 AAAAAGACCCCTTCCCTGCAAGACATGACGCACTCAGCCATTAAACAGCT 791
BSNT_01620___ 801 GAACCAAAATAAAAAAGGATTTTTCTTGATGGTCGAAGGGAGCCAGATTG 850
|....||||.|||||.||.||||||.|.|||||.|||||.|||||.||||
BPUM_0896___p 792 GTCTAAAAACAAAAATGGGTTTTTCCTTATGGTTGAAGGCAGCCAAATTG 841
BSNT_01620___ 851 ACTGGGCGGCCCATGACAATGATACAGTAGGAGCCATGAGCGAGGTTAAA 900
|||||||.|.||||||..||||||..||..|.||||||||.||..|.||.
BPUM_0896___p 842 ACTGGGCTGGCCATGATCATGATATTGTGAGTGCCATGAGTGAAATGAAG 891
BSNT_01620___ 901 GATTTTGAACAGGCCTATAAAGCCGCGATTGAATTTGCGAAAAAAGACAA 950
|||||||||.|.||.|.|.|||..||||||...|||||.|||||.||.||
BPUM_0896___p 892 GATTTTGAAAAAGCATTTGAAGAAGCGATTCGTTTTGCAAAAAAGGATAA 941
BSNT_01620___ 951 ACATACACTTGTGATTGCAACTGCTGACCATACAACCGGCGG-CTTTACC 999
|.||||..|.||.||..|.|||||.||.|||.||||.||||| ||.| ||
BPUM_0896___p 942 AAATACGTTAGTTATCACCACTGCCGATCATTCAACTGGCGGACTCT-CC 990
BSNT_01620___ 1000 ATTGGCGCAAACG------------GGG-----AAA-----AAAATTGGC 1027
.||||.|||.||| ||| ||| ||||
BPUM_0896___p 991 TTTGGGGCAGACGGCTCGGGTAGCTGGGATTACAAACCGGTAAAA----- 1035
BSNT_01620___ 1028 ACGCAGAACCGATTCTCTCCGCTAAGAAAACACCTGAATTCATGGCCAAA 1077
||| ||.||.||.||.|||||.||.||.||.||.
BPUM_0896___p 1036 --GCA---------------GCGAAAAAGACCCCTGATTTTATCGCAAAC 1068
BSNT_01620___ 1078 AAAA---TCAGTGAAGGCAAGCCGGTTAAAGATGTGCTCGCC-------C 1117
|||| ||||| ||||.|.|.|||.|| ||..| |
BPUM_0896___p 1069 AAAATCGTCAGT---GGCATGACTGTTGAA-------TCAGCACTGAAAC 1108
BSNT_01620___ 1118 GCTATGGCAATCTGAAAGTCACATCTGAAGAAA----------TCAAAAG 1157
..|||..|.||||..|..|||||...||||||| |||||
BPUM_0896___p 1109 AATATATCGATCTTGATTTCACAAAAGAAGAAATGGCCTCCATTCAAA-- 1156
BSNT_01620___ 1158 CGTTGAAGCAGCTG---CACAGGCTGAC----AAAA--------GCA--- 1189
||||.|||| ||.|||.|| | |||| |||
BPUM_0896___p 1157 -----AAGCTGCTGAAACAAAGGATG-CGGTTAAAATTGATGATGCAATT 1200
BSNT_01620___ 1190 -AAGGGGCCTACAAAGCCATCATC--AAGATTTTTAATACTCGCTCCAAC 1236
||| |||..||||.| .|||| |.|..||
BPUM_0896___p 1201 GAAG---------AAGTAATCAACGTGAGAT------------CACATAC 1229
BSNT_01620___ 1237 AGCGGATGGACGAGTACCGATCATACCGGCGAAGAAGTACCGGTATACGC 1286
| ||.|||||.|...|.|.||||||.||.||.|||||.||..|.|..||
BPUM_0896___p 1230 A--GGCTGGACCACATCAGGTCATACGGGTGATGAAGTGCCATTCTTTGC 1277
BSNT_01620___ 1287 GTACGGCC-------CCGGAAAAG--AAAAATTCCGCGGATTGATTAACA 1327
|||.||.| || ||||| |||| ||.|||||..|.|
BPUM_0896___p 1278 GTATGGTCCAACAAGCC--AAAAGCTAAAA-------GGTTTGATGGAAA 1318
BSNT_01620___ 1328 ATACGGACCAGGC-AAACATCATATTTAAGATT--TTAAAAACTGGAAAA 1374
|.||.||.||.|| ||||| ||| |||.|.|.| |.|||||| .||
BPUM_0896___p 1319 ACACCGATCAAGCAAAACA-CAT-TTTCAAACTGCTGAAAAAC----CAA 1362
BSNT_01620___ 1375 TAA 1377
|||
BPUM_0896___p 1363 TAA 1365
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