Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01619 and BPUM_0895

See Amino acid alignment / Visit BSNT_01619 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:07
# Commandline: needle
#    -asequence dna-align/BSNT_01619___spoVR.1.24716.seq
#    -bsequence dna-align/BPUM_0895___spoVR.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01619___spoVR-BPUM_0895___spoVR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01619___spoVR-BPUM_0895___spoVR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01619___spoVR
# 2: BPUM_0895___spoVR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1467
# Identity:    1095/1467 (74.6%)
# Similarity:  1095/1467 (74.6%)
# Gaps:         102/1467 ( 7.0%)
# Score: 4082.5
# 
#
#=======================================

BSNT_01619___      1 ---------TTGAACGCGGAGGAGAAGAAGG--GATTACAGCGGGCAATT     39
                              ||||  |||.|...|||.||.|  ..|||||....||.|||
BPUM_0895___s      1 ATGGTTTCCTTGA--GCGTATCTGAAAAACGTCTTTTACAAAAAGCCATT     48

BSNT_01619___     40 GAGGAAATTACCGAAATTGCAAAAGGATTCGGCCTTGATTTCTACCCGAT     89
                     ||.||||||||.|||||||||.|||||||.||.||.|||||.||.|||||
BPUM_0895___s     49 GATGAAATTACAGAAATTGCAGAAGGATTTGGTCTAGATTTTTATCCGAT     98

BSNT_01619___     90 GAGATATGAAATCTGCCCGGCTGAAATTATTTATACATTTGGCGCGTACG    139
                     |||||||||||||||.||.|||||||||||||||||.||.||.||.||||
BPUM_0895___s     99 GAGATATGAAATCTGTCCCGCTGAAATTATTTATACGTTCGGTGCATACG    148

BSNT_01619___    140 GGATGCCGACAAGATTCAGCCACTGGAGCTTCGGCAAGCAGTTTCACAAG    189
                     |.|||||.|||.||||||||||||||||||||||.||.||.|||||.||.
BPUM_0895___s    149 GAATGCCAACACGATTCAGCCACTGGAGCTTCGGGAAACAATTTCATAAA    198

BSNT_01619___    190 ATGAAGCTGCACTATGATCTAGGGTTAAGTAAGATCTATGAGCTGGTCAT    239
                     ||||||||.||.||||||.||||.|||||.||.||.||||||||||||||
BPUM_0895___s    199 ATGAAGCTTCATTATGATTTAGGATTAAGCAAAATTTATGAGCTGGTCAT    248

BSNT_01619___    240 TAACTCAGATCCATGCTACGCTTTTTTGCTGGACAGCAACTCACTGATCC    289
                     .||.|||.||||.|||||.||.|||.|.||.||.|..|||.|.||..|.|
BPUM_0895___s    249 CAATTCAAATCCTTGCTATGCCTTTCTACTTGATAATAACACGCTTGTTC    298

BSNT_01619___    290 AAAATAAATTGATTGTCGCACACGTTCTTGCTCATTGCGATTTCTTCAAA    339
                     ||||||||||.|||||.||.||.||..|.||.|||||.||||||||.|||
BPUM_0895___s    299 AAAATAAATTAATTGTGGCTCATGTATTGGCACATTGTGATTTCTTTAAA    348

BSNT_01619___    340 AACAACTGCCGTTTCCAAAACACGAAGCGCGATATGGTGGAAAGCATGGC    389
                     ||.||.|||||||||||||||||.||.||.||.|||||.|||||||||.|
BPUM_0895___s    349 AATAATTGCCGTTTCCAAAACACAAAACGAGACATGGTAGAAAGCATGTC    398

BSNT_01619___    390 GGCAACAGCTGAACGGATAAAACACTATGAACAGGTTCACGGGATAAAAG    439
                     .|||.|.|||||.|||||.|||.|.|||||.||..||||.||.|.|||||
BPUM_0895___s    399 AGCAGCGGCTGAGCGGATCAAAGAATATGAGCATCTTCATGGAACAAAAG    448

BSNT_01619___    440 AAGTCGAATCTTTTTTAGATGCAATCCTTTCG-ATT-------CAGGAGC    481
                     ||||.||||||||||||||.||        || |||       |||||||
BPUM_0895___s    449 AAGTTGAATCTTTTTTAGACGC--------CGTATTGGCTCTCCAGGAGC    490

BSNT_01619___    482 ATATCGATCCGTCGTTGGTCCGACCAAAGCTCCAA--TGGAGTGTGGATG    529
                     ||||.||||||||..|.||.||..||||.||  ||  ||||...|.|..|
BPUM_0895___s    491 ATATTGATCCGTCTCTTGTTCGCTCAAAACT--AAGCTGGAACATCGGCG    538

BSNT_01619___    530 ATGAGGAAGAGGAGAT-TGAAGAGG--CAGCC----------ACGCCTTA    566
                     ||||.|||||    || ||||||.|  |||||          |||||.||
BPUM_0895___s    539 ATGAAGAAGA----ATATGAAGATGACCAGCCAAAGCGCCAGACGCCGTA    584

BSNT_01619___    567 CGATGATCTATGGTCATTGGATGAAAAGAAACCGAAAAAACAAGTGA-AA    615
                     .||||||.|.|||....||||||      |.||  |||||.|.|||| ||
BPUM_0895___s    585 TGATGATTTGTGGGGGATGGATG------AGCC--AAAAATACGTGAGAA    626

BSNT_01619___    616 AAATCGAAA------AAACCGTTCCCGCCGCGGCCTGAAAAAGATATCCT    659
                     |||  ||||      ||.||.||.||.||...|||.|||||||||||..|
BPUM_0895___s    627 AAA--GAAAATCGTCAAGCCATTTCCACCAAAGCCGGAAAAAGATATTTT    674

BSNT_01619___    660 GCTTTTTATCGAGGAGCATTCCCGGGAGCTGGAGCCATGGCAGCGTGATA    709
                     .||.|||||.||||.|||.|||||||||.|.||||||||||||||||||.
BPUM_0895___s    675 ACTCTTTATTGAGGCGCACTCCCGGGAGTTAGAGCCATGGCAGCGTGATG    724

BSNT_01619___    710 TATTAACGATGATGAGAGAGGAAATGCTTTATTTCTGGCCTCAGCTGGAA    759
                     |..|.||||||.||||.|||||||||||.|||||.|||||.|||||.|||
BPUM_0895___s    725 TTCTCACGATGCTGAGGGAGGAAATGCTCTATTTTTGGCCGCAGCTAGAA    774

BSNT_01619___    760 ACCAAGATTATGAATGAGGGCTGGGCTTCCTATTGGCACCAGCGAATTAT    809
                     ||.||||||||||||||.||||||||.||.||||||||.|||||.|||||
BPUM_0895___s    775 ACAAAGATTATGAATGAAGGCTGGGCATCGTATTGGCATCAGCGGATTAT    824

BSNT_01619___    810 ACGTGAGCTTGATTTAACCTCTGATGAAGCGATCGAGTTCGCCAAGCTGA    859
                     .||.|||||||||||....||...||||.||||.|||||.|||||..|.|
BPUM_0895___s    825 GCGAGAGCTTGATTTGGATTCAAGTGAATCGATTGAGTTTGCCAAATTAA    874

BSNT_01619___    860 ATGCAGGTGTCGTTCAGCCGTCCAAAACAGGCATTAATCCTTATTATTTA    909
                     ||||.||.||.||.||||||||.|||||||||||.||||||||.||||||
BPUM_0895___s    875 ATGCTGGCGTTGTGCAGCCGTCAAAAACAGGCATCAATCCTTACTATTTA    924

BSNT_01619___    910 GGGCTAAAAATATTTGAAGACATTGAGGAGAGGTACAACAACCC----GA    955
                     ||.||.||.||.||||||||.||.||.|||.|.||..|.||.||    ||
BPUM_0895___s    925 GGTCTGAAGATTTTTGAAGATATCGAAGAGCGCTATGATAATCCATGTGA    974

BSNT_01619___    956 CGGAGGAAATGAAGAAAATGGGCGTGCA-GCCTGAC-------TCCGGCC    997
                     .|     |||.||.||||       ||| |..||||       ||.||||
BPUM_0895___s    975 AG-----AATTAACAAAA-------GCAGGGGTGACAAAAGGATCAGGCC   1012

BSNT_01619___    998 GGGAG-AAAATGTTTGAGGTCAGGGAGATTGAATCCGATATCTCTTTCAT   1046
                      |.|| |||||||||||.|||||||||||||||||.|||||.||.|||||
BPUM_0895___s   1013 -GCAGCAAAATGTTTGAAGTCAGGGAGATTGAATCAGATATTTCCTTCAT   1061

BSNT_01619___   1047 CCGCAATTATTTAACCAAAGAATTAGTCATGCGCGAGGATCTTTATTTGT   1096
                     .||.|||||.|||||.|||||..|.||.|||.|.||.|||.|.||.||||
BPUM_0895___s   1062 ACGAAATTACTTAACAAAAGACCTTGTGATGAGAGAAGATTTGTACTTGT   1111

BSNT_01619___   1097 TTCAAAAACAGGGCCGAGATTATAAAATCATCGATAAACAGTGGAAGTCG   1146
                     ||||||||||.||..|||||||.|||.|||||||||||.|.||||||.|.
BPUM_0895___s   1112 TTCAAAAACAAGGGAGAGATTACAAAGTCATCGATAAAGAATGGAAGGCT   1161

BSNT_01619___   1147 GTGCGCGACCAGCTCGTAAGCATGCGGGTAAATGGCGGTTTTCCATATTT   1196
                     ||.||.||.|||||.||.||||||.||||.||||||||.|||||.|||||
BPUM_0895___s   1162 GTTCGTGATCAGCTAGTCAGCATGAGGGTCAATGGCGGCTTTCCTTATTT   1211

BSNT_01619___   1197 GACAGTAAACGATGGCGATTATATGAAAAATAACGAGCTCTATATTAAGC   1246
                     ||||||.|..||||||||.|||.|.|||||.||.||.||.||||||||.|
BPUM_0895___s   1212 GACAGTGATGGATGGCGACTATTTAAAAAACAATGAACTTTATATTAAAC   1261

BSNT_01619___   1247 ATTGGTATGAAGGAATAGAGTTAGATTTGAAATATTTGGAGAAAGTGCTC   1296
                     ||||||||||.||.||.||..|||||.|||||||.||.||.|||||.||.
BPUM_0895___s   1262 ATTGGTATGAGGGCATTGAACTAGATCTGAAATACTTAGAAAAAGTACTT   1311

BSNT_01619___   1297 CCTTATTT--ATTCCAGCTTTGGGGAAGAAGCGTGCACATTGAGTCTGTG   1344
                     ||||||||  ||  ||.||.|||||||||||.|||||.||.||.||..|.
BPUM_0895___s   1312 CCTTATTTGCAT--CAACTATGGGGAAGAAGTGTGCATATCGAATCCATT   1359

BSNT_01619___   1345 CTTG-AGGATAAGGAAGTCATGTTTTCGTACGACGGAAAAGGTGTTCACC   1393
                     |||| |||| ||.|||||||||||||||||.||.||||||||.|||||..
BPUM_0895___s   1360 CTTGAAGGA-AAAGAAGTCATGTTTTCGTATGATGGAAAAGGAGTTCATA   1408

BSNT_01619___   1394 GCAGATATTT---ATAA   1407
                     |.|.||||.|   ||||
BPUM_0895___s   1409 GAAAATATCTCGCATAA   1425


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