Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01619 and BPUM_0895
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:07
# Commandline: needle
# -asequence dna-align/BSNT_01619___spoVR.1.24716.seq
# -bsequence dna-align/BPUM_0895___spoVR.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01619___spoVR-BPUM_0895___spoVR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01619___spoVR-BPUM_0895___spoVR.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01619___spoVR
# 2: BPUM_0895___spoVR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1467
# Identity: 1095/1467 (74.6%)
# Similarity: 1095/1467 (74.6%)
# Gaps: 102/1467 ( 7.0%)
# Score: 4082.5
#
#
#=======================================
BSNT_01619___ 1 ---------TTGAACGCGGAGGAGAAGAAGG--GATTACAGCGGGCAATT 39
|||| |||.|...|||.||.| ..|||||....||.|||
BPUM_0895___s 1 ATGGTTTCCTTGA--GCGTATCTGAAAAACGTCTTTTACAAAAAGCCATT 48
BSNT_01619___ 40 GAGGAAATTACCGAAATTGCAAAAGGATTCGGCCTTGATTTCTACCCGAT 89
||.||||||||.|||||||||.|||||||.||.||.|||||.||.|||||
BPUM_0895___s 49 GATGAAATTACAGAAATTGCAGAAGGATTTGGTCTAGATTTTTATCCGAT 98
BSNT_01619___ 90 GAGATATGAAATCTGCCCGGCTGAAATTATTTATACATTTGGCGCGTACG 139
|||||||||||||||.||.|||||||||||||||||.||.||.||.||||
BPUM_0895___s 99 GAGATATGAAATCTGTCCCGCTGAAATTATTTATACGTTCGGTGCATACG 148
BSNT_01619___ 140 GGATGCCGACAAGATTCAGCCACTGGAGCTTCGGCAAGCAGTTTCACAAG 189
|.|||||.|||.||||||||||||||||||||||.||.||.|||||.||.
BPUM_0895___s 149 GAATGCCAACACGATTCAGCCACTGGAGCTTCGGGAAACAATTTCATAAA 198
BSNT_01619___ 190 ATGAAGCTGCACTATGATCTAGGGTTAAGTAAGATCTATGAGCTGGTCAT 239
||||||||.||.||||||.||||.|||||.||.||.||||||||||||||
BPUM_0895___s 199 ATGAAGCTTCATTATGATTTAGGATTAAGCAAAATTTATGAGCTGGTCAT 248
BSNT_01619___ 240 TAACTCAGATCCATGCTACGCTTTTTTGCTGGACAGCAACTCACTGATCC 289
.||.|||.||||.|||||.||.|||.|.||.||.|..|||.|.||..|.|
BPUM_0895___s 249 CAATTCAAATCCTTGCTATGCCTTTCTACTTGATAATAACACGCTTGTTC 298
BSNT_01619___ 290 AAAATAAATTGATTGTCGCACACGTTCTTGCTCATTGCGATTTCTTCAAA 339
||||||||||.|||||.||.||.||..|.||.|||||.||||||||.|||
BPUM_0895___s 299 AAAATAAATTAATTGTGGCTCATGTATTGGCACATTGTGATTTCTTTAAA 348
BSNT_01619___ 340 AACAACTGCCGTTTCCAAAACACGAAGCGCGATATGGTGGAAAGCATGGC 389
||.||.|||||||||||||||||.||.||.||.|||||.|||||||||.|
BPUM_0895___s 349 AATAATTGCCGTTTCCAAAACACAAAACGAGACATGGTAGAAAGCATGTC 398
BSNT_01619___ 390 GGCAACAGCTGAACGGATAAAACACTATGAACAGGTTCACGGGATAAAAG 439
.|||.|.|||||.|||||.|||.|.|||||.||..||||.||.|.|||||
BPUM_0895___s 399 AGCAGCGGCTGAGCGGATCAAAGAATATGAGCATCTTCATGGAACAAAAG 448
BSNT_01619___ 440 AAGTCGAATCTTTTTTAGATGCAATCCTTTCG-ATT-------CAGGAGC 481
||||.||||||||||||||.|| || ||| |||||||
BPUM_0895___s 449 AAGTTGAATCTTTTTTAGACGC--------CGTATTGGCTCTCCAGGAGC 490
BSNT_01619___ 482 ATATCGATCCGTCGTTGGTCCGACCAAAGCTCCAA--TGGAGTGTGGATG 529
||||.||||||||..|.||.||..||||.|| || ||||...|.|..|
BPUM_0895___s 491 ATATTGATCCGTCTCTTGTTCGCTCAAAACT--AAGCTGGAACATCGGCG 538
BSNT_01619___ 530 ATGAGGAAGAGGAGAT-TGAAGAGG--CAGCC----------ACGCCTTA 566
||||.||||| || ||||||.| ||||| |||||.||
BPUM_0895___s 539 ATGAAGAAGA----ATATGAAGATGACCAGCCAAAGCGCCAGACGCCGTA 584
BSNT_01619___ 567 CGATGATCTATGGTCATTGGATGAAAAGAAACCGAAAAAACAAGTGA-AA 615
.||||||.|.|||....|||||| |.|| |||||.|.|||| ||
BPUM_0895___s 585 TGATGATTTGTGGGGGATGGATG------AGCC--AAAAATACGTGAGAA 626
BSNT_01619___ 616 AAATCGAAA------AAACCGTTCCCGCCGCGGCCTGAAAAAGATATCCT 659
||| |||| ||.||.||.||.||...|||.|||||||||||..|
BPUM_0895___s 627 AAA--GAAAATCGTCAAGCCATTTCCACCAAAGCCGGAAAAAGATATTTT 674
BSNT_01619___ 660 GCTTTTTATCGAGGAGCATTCCCGGGAGCTGGAGCCATGGCAGCGTGATA 709
.||.|||||.||||.|||.|||||||||.|.||||||||||||||||||.
BPUM_0895___s 675 ACTCTTTATTGAGGCGCACTCCCGGGAGTTAGAGCCATGGCAGCGTGATG 724
BSNT_01619___ 710 TATTAACGATGATGAGAGAGGAAATGCTTTATTTCTGGCCTCAGCTGGAA 759
|..|.||||||.||||.|||||||||||.|||||.|||||.|||||.|||
BPUM_0895___s 725 TTCTCACGATGCTGAGGGAGGAAATGCTCTATTTTTGGCCGCAGCTAGAA 774
BSNT_01619___ 760 ACCAAGATTATGAATGAGGGCTGGGCTTCCTATTGGCACCAGCGAATTAT 809
||.||||||||||||||.||||||||.||.||||||||.|||||.|||||
BPUM_0895___s 775 ACAAAGATTATGAATGAAGGCTGGGCATCGTATTGGCATCAGCGGATTAT 824
BSNT_01619___ 810 ACGTGAGCTTGATTTAACCTCTGATGAAGCGATCGAGTTCGCCAAGCTGA 859
.||.|||||||||||....||...||||.||||.|||||.|||||..|.|
BPUM_0895___s 825 GCGAGAGCTTGATTTGGATTCAAGTGAATCGATTGAGTTTGCCAAATTAA 874
BSNT_01619___ 860 ATGCAGGTGTCGTTCAGCCGTCCAAAACAGGCATTAATCCTTATTATTTA 909
||||.||.||.||.||||||||.|||||||||||.||||||||.||||||
BPUM_0895___s 875 ATGCTGGCGTTGTGCAGCCGTCAAAAACAGGCATCAATCCTTACTATTTA 924
BSNT_01619___ 910 GGGCTAAAAATATTTGAAGACATTGAGGAGAGGTACAACAACCC----GA 955
||.||.||.||.||||||||.||.||.|||.|.||..|.||.|| ||
BPUM_0895___s 925 GGTCTGAAGATTTTTGAAGATATCGAAGAGCGCTATGATAATCCATGTGA 974
BSNT_01619___ 956 CGGAGGAAATGAAGAAAATGGGCGTGCA-GCCTGAC-------TCCGGCC 997
.| |||.||.|||| ||| |..|||| ||.||||
BPUM_0895___s 975 AG-----AATTAACAAAA-------GCAGGGGTGACAAAAGGATCAGGCC 1012
BSNT_01619___ 998 GGGAG-AAAATGTTTGAGGTCAGGGAGATTGAATCCGATATCTCTTTCAT 1046
|.|| |||||||||||.|||||||||||||||||.|||||.||.|||||
BPUM_0895___s 1013 -GCAGCAAAATGTTTGAAGTCAGGGAGATTGAATCAGATATTTCCTTCAT 1061
BSNT_01619___ 1047 CCGCAATTATTTAACCAAAGAATTAGTCATGCGCGAGGATCTTTATTTGT 1096
.||.|||||.|||||.|||||..|.||.|||.|.||.|||.|.||.||||
BPUM_0895___s 1062 ACGAAATTACTTAACAAAAGACCTTGTGATGAGAGAAGATTTGTACTTGT 1111
BSNT_01619___ 1097 TTCAAAAACAGGGCCGAGATTATAAAATCATCGATAAACAGTGGAAGTCG 1146
||||||||||.||..|||||||.|||.|||||||||||.|.||||||.|.
BPUM_0895___s 1112 TTCAAAAACAAGGGAGAGATTACAAAGTCATCGATAAAGAATGGAAGGCT 1161
BSNT_01619___ 1147 GTGCGCGACCAGCTCGTAAGCATGCGGGTAAATGGCGGTTTTCCATATTT 1196
||.||.||.|||||.||.||||||.||||.||||||||.|||||.|||||
BPUM_0895___s 1162 GTTCGTGATCAGCTAGTCAGCATGAGGGTCAATGGCGGCTTTCCTTATTT 1211
BSNT_01619___ 1197 GACAGTAAACGATGGCGATTATATGAAAAATAACGAGCTCTATATTAAGC 1246
||||||.|..||||||||.|||.|.|||||.||.||.||.||||||||.|
BPUM_0895___s 1212 GACAGTGATGGATGGCGACTATTTAAAAAACAATGAACTTTATATTAAAC 1261
BSNT_01619___ 1247 ATTGGTATGAAGGAATAGAGTTAGATTTGAAATATTTGGAGAAAGTGCTC 1296
||||||||||.||.||.||..|||||.|||||||.||.||.|||||.||.
BPUM_0895___s 1262 ATTGGTATGAGGGCATTGAACTAGATCTGAAATACTTAGAAAAAGTACTT 1311
BSNT_01619___ 1297 CCTTATTT--ATTCCAGCTTTGGGGAAGAAGCGTGCACATTGAGTCTGTG 1344
|||||||| || ||.||.|||||||||||.|||||.||.||.||..|.
BPUM_0895___s 1312 CCTTATTTGCAT--CAACTATGGGGAAGAAGTGTGCATATCGAATCCATT 1359
BSNT_01619___ 1345 CTTG-AGGATAAGGAAGTCATGTTTTCGTACGACGGAAAAGGTGTTCACC 1393
|||| |||| ||.|||||||||||||||||.||.||||||||.|||||..
BPUM_0895___s 1360 CTTGAAGGA-AAAGAAGTCATGTTTTCGTATGATGGAAAAGGAGTTCATA 1408
BSNT_01619___ 1394 GCAGATATTT---ATAA 1407
|.|.||||.| ||||
BPUM_0895___s 1409 GAAAATATCTCGCATAA 1425
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