Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01498 and BPUM_0892
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:03
# Commandline: needle
# -asequence dna-align/BSNT_01498___katA.1.24716.seq
# -bsequence dna-align/BPUM_0892___katX2.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01498___katA-BPUM_0892___katX2.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01498___katA-BPUM_0892___katX2.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01498___katA
# 2: BPUM_0892___katX2
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1614
# Identity: 967/1614 (59.9%)
# Similarity: 967/1614 (59.9%)
# Gaps: 300/1614 (18.6%)
# Score: 2415.5
#
#
#=======================================
BSNT_01498___ 1 ATG---AGTTCAAAT------AAACTGACAACTAGCTGGGGCGCTCCGGT 41
||| |.||||||| ||..|||||||.|.|...||||..||.||
BPUM_0892___k 1 ATGACAAATTCAAATCATAAAAATTTGACAACGAACCAAGGCGTACCTGT 50
BSNT_01498___ 42 TGGAGATAATCAAAACTCAATGACTGCCGGTTCTCGCGGACCAACTTTAA 91
|||.||||||||||||||||..||.||.|||...|||||.||.||.||..
BPUM_0892___k 51 TGGCGATAATCAAAACTCAAGAACAGCTGGTCACCGCGGTCCTACATTTC 100
BSNT_01498___ 92 TTCAAGATGTA-CATTTACTCGAAAAATTGGCCCATTTCAACCGAGAACG 140
||.|.||| || |||||..|.||||||.|.||.||.|||.|.||.|||||
BPUM_0892___k 101 TTGATGAT-TACCATTTGATTGAAAAACTTGCACACTTCGATCGTGAACG 149
BSNT_01498___ 141 TGTTCCTGAACGTGTTGTTCACGCCAAAGGAGCAGGCGCACACGGATAT- 189
..||||.||.|||||||||||.||.|.|||.||.|||||..|.|| |.|
BPUM_0892___k 150 CATTCCAGAGCGTGTTGTTCATGCAAGAGGCGCCGGCGCTTATGG-TGTG 198
BSNT_01498___ 190 TTTGAAG-TGACAAACGACGTAACA-----AAATACACGAAAGCCGCTTT 233
||||||| |||.|| ||.|| |||.|.||.|||||.||.||
BPUM_0892___k 199 TTTGAAGTTGAAAA------TAGCATGGAGAAACATACAAAAGCTGCCTT 242
BSNT_01498___ 234 CCTTTCTGAAGTCGGCAAACGCACACCG------TTGTTCATCCGTTTCT 277
|.|...|||||..||.||| ||.||.| ||||| ||.||||
BPUM_0892___k 243 CTTAAGTGAAGATGGAAAA--CAGACAGATGTTTTTGTT----CGCTTCT 286
BSNT_01498___ 278 CAACAGTT-----GCCGGTGAACTTGGCTCTGCTGACACAGTTCGCGATC 322
|.||.||| .|| |.|| ||.||..||||.|||.|.||.||||
BPUM_0892___k 287 CTACCGTTATTCATCC--TAAA---GGTTCACCTGAAACATTGCGTGATC 331
BSNT_01498___ 323 CGCGCGGATTTGCTGTTAAATTTTATACTGAAGAAGGAAACTACGACATC 372
|||||||.||||||||.|||||||||||.||||||||.|||||.||..|.
BPUM_0892___k 332 CGCGCGGCTTTGCTGTCAAATTTTATACAGAAGAAGGCAACTATGATCTA 381
BSNT_01498___ 373 GTCGGCAACAATACGCCTGTATTCTTTATCCGCGATGCGATT-AAGTTCC 421
||.||.||.||...|||..|.||||||||.||.||||| ||| ||.||||
BPUM_0892___k 382 GTTGGTAATAACTTGCCGATCTTCTTTATACGTGATGC-ATTGAAATTCC 430
BSNT_01498___ 422 CTGATTTCATCCATACACAAAAAAGAGATCCAAAAACACACCTGAAAAAC 471
|||||.|..|.||..|.|..|||..||||||...|||..|..|..||.|.
BPUM_0892___k 431 CTGATATGGTTCACTCTCTCAAACCAGATCCTGTAACGAATATCCAAGAT 480
BSNT_01498___ 472 CCT-ACGGCTGTATGGGA-TTTCTGGTCACTTT--CACCAGAGTCACTGC 517
||| ||.|.|.| ||||| |||.|| ||.|| ||||.||.|| |
BPUM_0892___k 481 CCTGACCGTTAT-TGGGATTTTATG---ACCTTAACACCTGAATC----C 522
BSNT_01498___ 518 AC-CAAGTG---ACAATCCTGATGTCTGACCGCGGAATTCCTGCGACACT 563
|| ||..|| |||...||..|.|||||....||||||||||||| |||
BPUM_0892___k 523 ACTCATATGCTCACATGGCTCTTCTCTGATGAAGGAATTCCTGCGA-ACT 571
BSNT_01498___ 564 TCGC-CACATGCACGGCTTC-GGAAGCCATACATTCAAATGG----ACAA 607
.||| .|.||||.||| ||| ||....||||||||.|.|||| ||||
BPUM_0892___k 572 ACGCTGAAATGCGCGG-TTCTGGTGTGCATACATTTAGATGGGTCAACAA 620
BSNT_01498___ 608 ATGCCGAAGGCGAAGGC---GTATGGATTAAATATCACT-------TTAA 647
|| |.||.||| .| .|||| |.|||||||||| ||
BPUM_0892___k 621 AT----ATGGAGAA-ACAAAATATG--TGAAATATCACTGGAGACCTT-- 661
BSNT_01498___ 648 AACAGAACAAGGCGT--GAAAAACCTTGATGTCAAT--ACG--GCAGCAA 691
||| |||||.| |.|| || |.||||| |.| ||||||.
BPUM_0892___k 662 --CAG---AAGGCATTCGTAA----TT--TATCAATGGAAGAAGCAGCAG 700
BSNT_01498___ 692 AAATTGCC-GGTGAAAACCCTGATTACCA------TACAGAAGACCT-TT 733
|||| || .|.||| |||||.||| .|||..||||.| |.
BPUM_0892___k 701 AAAT--CCAAGCGAA-----TGATTTCCAGCATGCGACAAGAGACTTATA 743
BSNT_01498___ 734 TCAACGCAATCGAAAACGGTGATTATCCTGCATGGAAACTATATGTGCAA 783
|.|.||| ||.||||||||..|.|||||.||.|||.|..|||||||.||.
BPUM_0892___k 744 TGACCGC-ATTGAAAACGGCAACTATCCAGCCTGGGACTTATATGTCCAG 792
BSNT_01498___ 784 ATCATGCC---------TTTAGAAGATGCAAATACGTACCG-TTTCGATC 823
.|.||||| ||..||.||| |.| | ||..||||
BPUM_0892___k 793 TTGATGCCGCTGAGCGATTATGATGAT-------CTT---GATTATGATC 832
BSNT_01498___ 824 CGTTTGATGTCACAAAAGTTTGGTCTCAAAAAGACTACCCGTT---AATC 870
|.|.||||...|||||....|||..|.||.||||.||||||.| ||
BPUM_0892___k 833 CATGTGATCCAACAAAGACATGGAGTGAAGAAGATTACCCGCTTCAAA-- 880
BSNT_01498___ 871 GAGGTCGGACGCATGGTTCTAGACAGAAATCCGGAAAACTACTTTGCAGA 920
|.||.|||||||||...||..||.|.|||||.||.||||.||||||.||
BPUM_0892___k 881 -AAGTAGGACGCATGACACTGAACCGCAATCCTGAGAACTTCTTTGCTGA 929
BSNT_01498___ 921 GGTAGAACAAGCGACATTTTCACCTGGAACC-------CTCGTGCCTGGT 963
...|||.|||.|..| |||||| ||| ||.||.||.||.
BPUM_0892___k 930 AACAGAGCAATCTGC--TTTCAC-----ACCAAGTGCACTTGTTCCAGGA 972
BSNT_01498___ 964 ATTGATGTTTCACCGGATAAAATGCTTCAAGGCCGACTGTTTGCTTATCA 1013
|||||.|..||....||||||.||||||||||.||.|||||..|.||||.
BPUM_0892___k 973 ATTGAAGCATCTGAAGATAAACTGCTTCAAGGTCGTCTGTTCTCATATCC 1022
BSNT_01498___ 1014 TGATGCACACCGCTACCGTGTCGGTGCAAACCATCAAGCGC-TGCCAATC 1062
.|||.|.||.||..|.|||.|.|||||.|||.|| |.|||| |.||..|.
BPUM_0892___k 1023 AGATACGCAGCGTCATCGTCTTGGTGCCAACTAT-ATGCGCATTCCGGTG 1071
BSNT_01498___ 1063 AACCG--CGCACGCAACAAAGTAAACAATTATCAGCGTGATGGGCAAATG 1110
|||.| |..|.|||.| .|||.|||||.||||||..|||||
BPUM_0892___k 1072 AACTGTCCTTATGCACC--TGTACACAATAATCAGCAGGATGG------- 1112
BSNT_01498___ 1111 CGTTTTGATGATAACGGC-------GGCGGATC-TGTGTATTACGAGCCT 1152
.||.||||.||||.| .|||| || |.|..|.||.||.||.
BPUM_0892___k 1113 ---CTTTATGACAACGACTCGTCCAAGCGG-TCATATTAACTATGAACCA 1158
BSNT_01498___ 1153 AACAGCTTCGGCGGT---CCAAAAGA-----GTCACCT--GAGGATAAG- 1191
|||.|.|.||..|.| |||||||| .||| || .|||| |||
BPUM_0892___k 1159 AACCGTTACGATGATCAGCCAAAAGAAAACCCTCA-CTACAAGGA-AAGT 1206
BSNT_01498___ 1192 ---CAAG-----CAGCAT-ATC---CGGT---ACAAGGTATCGCTGACAG 1226
|||| ||..|| ||| .||| ||||...|| |||.|
BPUM_0892___k 1207 GAACAAGTCCTTCACGATGATCGTATGGTGAGACAAAAAAT---TGAAA- 1252
BSNT_01498___ 1227 CGTAAGCTACGATCACAACGATCACTACACTCAAGCCGGTGATCTGTATC 1276
|.|..|||||| |.||..|||||.||.||....||||
BPUM_0892___k 1253 -----------AACCAAACGAT---TTCAAACAAGCTGGGGAAAAATATC 1288
BSNT_01498___ 1277 G--TTTAATGAG-TGAAGATGAACGTACCCGCCTTGTTGAAAATATCGTT 1323
| ..||.|.|| .||||| ||| ||..||.|||.|.|||| |.| |
BPUM_0892___k 1289 GAAGCTACTCAGAAGAAGA-GAA---ACAAGCATTGATCAAAA-ACC--T 1331
BSNT_01498___ 1324 AA----TGCTATGAAGCCGGTAGA---AAAAGAAGAAATCAAGCTGCGCC 1366
|| ||.|.|||| ||| |||.||..||| |.
BPUM_0892___k 1332 AACAGCTGATCTGAA------AGACGTAAATGATAAAA----------CA 1365
BSNT_01498___ 1367 AAAT------CGAGC----ACTTCTACAAAGCGGATCCTGAATACGGAAA 1406
|||| |||.| |||||||....||.|||...||.||||||.|
BPUM_0892___k 1366 AAATTACTTGCGATCTGCAACTTCTATCGTGCAGATGAAGATTACGGACA 1415
BSNT_01498___ 1407 ACGCGTGGCAGAAGGCCTTG-----GATTGCCGATTAAA---------AA 1442
|||..|.||.||....|||| |||..|||.|.|.| ||
BPUM_0892___k 1416 ACGATTAGCCGATTCACTTGGCGTAGATATCCGCTCATACCTTCAAGGAA 1465
BSNT_01498___ 1443 AGATGCTTAA---- 1452
|.||| ||
BPUM_0892___k 1466 ACATG---AAATAA 1476
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