Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01603 and BPUM_0885
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:07
# Commandline: needle
# -asequence dna-align/BSNT_01603___yhxB.1.24716.seq
# -bsequence dna-align/BPUM_0885.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01603___yhxB-BPUM_0885.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01603___yhxB-BPUM_0885.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01603___yhxB
# 2: BPUM_0885
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1790
# Identity: 1271/1790 (71.0%)
# Similarity: 1271/1790 (71.0%)
# Gaps: 88/1790 ( 4.9%)
# Score: 4264.0
#
#
#=======================================
BSNT_01603___ 1 ATGACTTGGAGAAAGAGCTATGAACGCTGGAAACAGACAGAA-CATTTAG 49
||||.|||||..|.||..|||||.||.||| |.||...|||| ||
BPUM_0885 1 ATGAATTGGAAGACGAATTATGAGCGATGG-ATCAATGAGAAGCA----- 44
BSNT_01603___ 50 ATCCGGAATTAAAAGAGCGCCTTATTGAAT---TAGAGGGA--------- 87
||.|||| |..||| ||.|..|||| |.||||.|
BPUM_0885 45 --CCTGAAT--ACTGAG---CTAAGGGAATGGCTGGAGGCACATCAAGAT 87
BSNT_01603___ 88 GATGAACAGGCCCTTGAGGACTGTTTCTATAAAGACCTTGAATTCGGTAC 137
|||.||||.||.|||||.|||||||||||.|||.|||||||.|||||.||
BPUM_0885 88 GATCAACAAGCACTTGAAGACTGTTTCTACAAAAACCTTGAGTTCGGCAC 137
BSNT_01603___ 138 CGGCGGAATGCGCGGAGAAATCGGCGCCGGGACAAATCGGATGAATATTT 187
.||.||||||||.||.||.||.||.||.||.||.|||||.||||||.|.|
BPUM_0885 138 TGGAGGAATGCGTGGGGAGATTGGTGCTGGCACGAATCGAATGAATGTGT 187
BSNT_01603___ 188 ACACTGTGCGCAAAGCATCGGCCGGGTTTGCGGCATACATCTCGAAGCAA 237
||||.||.||.||||||||.||.||..||||.||.||.||..|.||.||.
BPUM_0885 188 ACACGGTTCGTAAAGCATCAGCAGGTCTTGCTGCGTATATTGCAAAACAT 237
BSNT_01603___ 238 GGTGAGGAAGCGAAAAAACGGGGCGTTGTCATTGCTTATGATTCCCGCCA 287
||.|||||.||.||||.|.|.|||||.|.||||||.||.|||||.|||||
BPUM_0885 238 GGAGAGGATGCAAAAAGAAGAGGCGTCGCCATTGCATACGATTCACGCCA 287
BSNT_01603___ 288 TAAATCTCCGGAGTTCGCGATGGAAGCGGCAAAAACACTTGCGACACAAG 337
||||||.||.||.||.|||||||||||.||.||.||.|||||..|.||.|
BPUM_0885 288 TAAATCGCCTGAATTTGCGATGGAAGCAGCTAAGACTCTTGCCGCGCAGG 337
BSNT_01603___ 338 GCATCCAAACATACGTGTTTGATGAGCTTCGCCCGACGCCAGAGCTGTCA 387
||||..||||||||||.|||||.||.||.||.||.||.||||||||.||.
BPUM_0885 338 GCATTAAAACATACGTATTTGACGAACTGCGTCCAACACCAGAGCTTTCC 387
BSNT_01603___ 388 TTCGCTGTCAGACAGCTGAACGCTTATGGAGGGATTGTGGTAACGGCAAG 437
||.|||||..|..|||||||.||.|.||..||||||||.|||||.|||||
BPUM_0885 388 TTTGCTGTTCGTGAGCTGAATGCATTTGCTGGGATTGTCGTAACAGCAAG 437
BSNT_01603___ 438 CCATAACCCGCCTGAATATAACGGCTACAAAGTATACGGGGATGATGGCG 487
.|||||.||.||.||||||||.|||||.||||||||.||.||.||.||||
BPUM_0885 438 TCATAATCCACCAGAATATAATGGCTATAAAGTATATGGAGAAGACGGCG 487
BSNT_01603___ 488 GCCAGCTGCCTCCAAAGGAAGCGGACATC--GTCATTGAGCAGGTAAACG 535
|.||||||||.|||....|||| |.||| ||||||.||.|.|||.|.|
BPUM_0885 488 GACAGCTGCCGCCATTTCAAGC--AGATCAAGTCATTCAGGAAGTAGATG 535
BSNT_01603___ 536 CGATTGAAAATGAGCTGACGATCACAGTGGACGAAGAAAATAAGTTAAAA 585
|.||.||||||||.|||.||||..||||.||...||||.|.|.|||||||
BPUM_0885 536 CAATAGAAAATGAACTGTCGATTTCAGTTGATTCAGAAGAAACGTTAAAA 585
BSNT_01603___ 586 GAAAAAGGCTTAATTAAAATCATCGGTGAAGATATTGATAAAGTTTATAC 635
.||.||||..|.||.||.||.|||||.|.|||.||.|||...|.|||||.
BPUM_0885 586 CAACAAGGGCTGATCAACATGATCGGAGCAGAAATCGATCTTGCTTATAT 635
BSNT_01603___ 636 AGAAAAACTGACGTCCATTTCTGTACATCCTGAATTATCGGAAGAAGTAG 685
.||||||.|.|...||||...|||.||.|||||..|..|.||.|||||.|
BPUM_0885 636 TGAAAAATTAAAAACCATCAGTGTTCACCCTGAGCTGGCAGATGAAGTCG 685
BSNT_01603___ 686 ATGTAAAGGTTGTTTTCACACCGCTGCATGGAACTGCAAATAAACCGGTC 735
||||.||.||.||||||||.|||||.|||||.||.||.|||.|.||.|||
BPUM_0885 686 ATGTTAAAGTCGTTTTCACCCCGCTTCATGGCACGGCCAATCAGCCTGTC 735
BSNT_01603___ 736 AGACGCGGTCTTGAAGCACTCGGCTACAAAAATGTAACGGTTGTCAAAGA 785
.||...||.|||.||||..|.|||||..||.||||.||.|||||....||
BPUM_0885 736 CGAAAAGGGCTTCAAGCTTTAGGCTATCAACATGTGACCGTTGTGCCTGA 785
BSNT_01603___ 786 ACAGGAACTGCCGGATTCAAACTTCTCCACTGTTACATCGCCAAACCCGG 835
|||||||..|||.||..||.|.||.||.||.||.|||||||||||.||.|
BPUM_0885 786 ACAGGAAAGGCCAGACCCACAATTTTCAACAGTGACATCGCCAAATCCAG 835
BSNT_01603___ 836 AAGAGCATGCGGCATTCGAATATGCCATTAAGCTTGGGGAGGAGCAGAAT 885
||||||||||.|||||.||||||||.||.||||||||.||..|||||||.
BPUM_0885 836 AAGAGCATGCCGCATTTGAATATGCTATCAAGCTTGGCGAAAAGCAGAAC 885
BSNT_01603___ 886 GCAGATATTCTCATCGCGACAGATCCTGATGCTGACCGCCTCGGCATCGC 935
||.||||||||.|||||.||||||||.|||||.||..|..|.||.||.||
BPUM_0885 886 GCTGATATTCTTATCGCAACAGATCCAGATGCGGATAGATTAGGTATTGC 935
BSNT_01603___ 936 GGTGAAAAACGATCAAGGCAAATATACAGTGCTGACAGGAAACCAAACCG 985
|||.|.|.|..||.|.|||.|.|.|||.||..|.|||||.||||||||.|
BPUM_0885 936 GGTCAGAGATCATGATGGCGAGTTTACCGTTTTAACAGGCAACCAAACAG 985
BSNT_01603___ 986 GAGCGCTGCTGCTTCATTACCTGCTTTCTGAAAAGAAAAAACAAGG-CA- 1033
||||..|..||||.|||||..|..|.||||||||..||||||..|| ||
BPUM_0885 986 GAGCCTTATTGCTCCATTATTTATTGTCTGAAAAACAAAAACTTGGTCAG 1035
BSNT_01603___ 1034 -TCCTGCCTGATAACG--GTGTTGTTCTCAAAACGATCGTCACAAGTGAA 1080
|.|.|||| || .||||||..|.||||||||.||.||||||||.
BPUM_0885 1036 CTGCCGCCT-----CGTCCTGTTGTGATGAAAACGATTGTTACAAGTGAG 1080
BSNT_01603___ 1081 ATCGGCCGTGCTGTAGCTTCTTCATTCGGCCTTG---ATACGATTGATAC 1127
.|.||.|||||.||.|||||..||||.|| || ||||||||||.||
BPUM_0885 1081 CTTGGGCGTGCAGTTGCTTCCGCATTTGG---TGCCCATACGATTGACAC 1127
BSNT_01603___ 1128 GCTGACAGGCTTTAAGTTTATCGGTGAAAAGATTAAGGAAT---ACGAG- 1173
.|||||.||||||||.|||||.||.|||||.||.|||.||| |.|||
BPUM_0885 1128 ACTGACCGGCTTTAAATTTATTGGAGAAAAAATCAAGCAATTTGAAGAGA 1177
BSNT_01603___ 1174 GCATCAGGCCAGTATACCTTCCAATTCGGTTATGAAGAGAGCTACGGTTA 1223
|| ||..|.||.||.||.||.||||||||.|||||.|||||.||.||
BPUM_0885 1178 GC----GGAGAATACACGTTTCAGTTCGGTTACGAAGAAAGCTATGGCTA 1223
BSNT_01603___ 1224 TTTAATCGGGGATTTTGCCCGCGATAAGGACGCCATTCAGGCTGCGCTTT 1273
|||.|||||.||.||||||||.|||||.||.||..|.||.||.|||||.|
BPUM_0885 1224 TTTGATCGGTGACTTTGCCCGAGATAAAGATGCGGTGCAAGCAGCGCTGT 1273
BSNT_01603___ 1274 TGGCAGTTGAAGTTTGCGCGTTCTATAAAAAACAGGGAATGTCTTTGTAT 1323
|.||.||.|||||....||.||||||||||||||.||.|.|||.|||||.
BPUM_0885 1274 TAGCTGTCGAAGTAACTGCTTTCTATAAAAAACAAGGCAAGTCCTTGTAC 1323
BSNT_01603___ 1324 GAGGCGCTCATCAATCTCTTTAACGAGTATGGTTTTTATCGTGAAGGGCT 1373
||.|||||..|..||.|.||.||.||.|.|||.|||||.||.||||||.|
BPUM_0885 1324 GATGCGCTTGTTGATATTTTCAAGGAATTTGGATTTTACCGAGAAGGGTT 1373
BSNT_01603___ 1374 GAAATCCCTGACGCTGAAAGGCAAACAAGGAGCAGAGCAAATTGAAGCGA 1423
.||.||..|.||..|.|||||.|||.|||||||||||||||||..|||||
BPUM_0885 1374 AAAGTCGTTAACCTTAAAAGGAAAAGAAGGAGCAGAGCAAATTTCAGCGA 1423
BSNT_01603___ 1424 TTCTTGCTTCCTTCAGACAAAATCCGCC-GCAGAAAATGGCGGGCAAACA 1472
|.|||..|.||||.|||..||||||||| ||.| ..||.||||| .||
BPUM_0885 1424 TCCTTCATACCTTTAGAACAAATCCGCCAGCTG-CTATCGCGGG---TCA 1469
BSNT_01603___ 1473 GGTTGTCACAG-CA--GAAGATTACGCTGT-----AAG-CAAACGGACGC 1513
|....||||.| || ||.||||| | ||| |||| |||..
BPUM_0885 1470 GCGCATCACTGTCATCGAGGATTA-----TCAATCAAGTCAAA--GACAT 1512
BSNT_01603___ 1514 TTC--TGACTGAAAGCAAAGAAGAAGCCATCGACTTGCCAAAATCAAATG 1561
.|| || ||||||..|||||||||.||||..|..|||||..||||||||
BPUM_0885 1513 CTCGTTG-CTGAAAAAAAAGAAGAAACCATTCATCTGCCAGCATCAAATG 1561
BSNT_01603___ 1562 TATTGAAATACTTCCTGGAAGACGGGTCTTGGTTCTGTCTTCGTCCTTCT 1611
|..|||||||.|||||.||.||.||.||.|||||||||.|..|.|||||.
BPUM_0885 1562 TGCTGAAATATTTCCTTGAGGATGGCTCGTGGTTCTGTTTAAGGCCTTCC 1611
BSNT_01603___ 1612 GGAACTGAGCCGAAGGTGAAATTTTATTTCGCCGTAAAAGGGTCATCTTT 1661
||.||||||||.||.||||||||||||.|.||.||.|||||..|||||||
BPUM_0885 1612 GGCACTGAGCCTAAAGTGAAATTTTATATGGCTGTCAAAGGTACATCTTT 1661
BSNT_01603___ 1662 GGAAGACAG---TGAACAGCGTCTTGCCGCCCTT-TCTGAAGATGTAATG 1707
...|||.|| .|||.||| ||..||..|| ||.|||||.||.|||
BPUM_0885 1662 AACAGATAGCGAAGAAAAGC----TGAAGCATTTGTCAGAAGAAGTGATG 1707
BSNT_01603___ 1708 -AAGACGGTGGATGAAATTGTTGAGTCGACGGCAAAATAA 1746
|||.| ||..||||.||.||.||....||.||.||||||
BPUM_0885 1708 AAAGTC-GTTTATGAGATCGTGGAAGAAACAGCTAAATAA 1746
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