Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01600 and BPUM_0883
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:06
# Commandline: needle
# -asequence dna-align/BSNT_01600___glpK.1.24716.seq
# -bsequence dna-align/BPUM_0883___glpK.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01600___glpK-BPUM_0883___glpK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01600___glpK-BPUM_0883___glpK.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01600___glpK
# 2: BPUM_0883___glpK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1527
# Identity: 1136/1527 (74.4%)
# Similarity: 1136/1527 (74.4%)
# Gaps: 66/1527 ( 4.3%)
# Score: 4204.5
#
#
#=======================================
BSNT_01600___ 1 ATG------GAAACGTACATTTTATCCTTAGATCAGGGGACGACAAGTTC 44
||| ||||..||.|||.|..|.||||||||.|||||.|||||..|
BPUM_0883___g 1 ATGACAAAAGAAAAATATATTCTTGCATTAGATCAAGGGACAACAAGCAC 50
BSNT_01600___ 45 AAGAGCGATTCTGTTTAATAAAGAAGGCAAAATTGTCCACTCTGCTCAAA 94
|||||||||..|.|||.||.|||||||||||||||..||..|.|||||.|
BPUM_0883___g 51 AAGAGCGATCTTATTTGATCAAGAAGGCAAAATTGCACATACAGCTCAGA 100
BSNT_01600___ 95 AGGAATTTACACAATACTTCCCGCATCCTGGCTGGGTTGAGCATAATGCC 144
|||||||||..||||||||.|||.|.||.||||||||.||.||.|||||.
BPUM_0883___g 101 AGGAATTTAATCAATACTTTCCGAACCCAGGCTGGGTAGAACACAATGCA 150
BSNT_01600___ 145 AATGAAATTTGGGGCTCTGTCCTCGCGGTTATCGCCTCAGTCATCTC--- 191
||||||||||||.|||||||.|| .||||||||.||
BPUM_0883___g 151 AATGAAATTTGGAGCTCTGTTCT------------ATCAGTCATTTCAAC 188
BSNT_01600___ 192 ---------TGAATCAGGAAT-----CAGCGCTTCTCAAATTGCCGGCAT 227
|||||||||||| ||| .||||||.||.||.||
BPUM_0883___g 189 TGCTTTAATTGAATCAGGAATTGAAGCAG-----ATCAAATCGCTGGTAT 233
BSNT_01600___ 228 CGGCATCACGAACCAGCGCGAGACGACGGTTGTGTGGGATAAAGATACAG 277
|||.||.|||||||||||.|||||..|||||||.|||||||||.||||||
BPUM_0883___g 234 CGGAATTACGAACCAGCGTGAGACAGCGGTTGTTTGGGATAAACATACAG 283
BSNT_01600___ 278 GAAGTCCTGTCTATAATGCAATCGTTTGGCAGTCCAGACAGACGTCCGGC 327
|....||..|.||.|||||.||.|||||||||||.|||||.|||||.|||
BPUM_0883___g 284 GCGCACCAATTTACAATGCCATTGTTTGGCAGTCAAGACAAACGTCTGGC 333
BSNT_01600___ 328 ATTTGTGAGGAACTTCGT-----GAAAAAGGATATAATGATAAATTCAGA 372
||||||||.|| || |||.|||||.|.|||||.|..||.|||
BPUM_0883___g 334 ATTTGTGAAGA-----GTTAAAAGAACAAGGACACAATGAAACGTTTAGA 378
BSNT_01600___ 373 AAAAAAACTGGGCTTTTAATCGATCCATACTTCTCCGGCACGAAGGTGAA 422
||.|||||.||||||.|.||.|||.|.||.|||||.||.||.|||||.||
BPUM_0883___g 379 AATAAAACAGGGCTTCTCATTGATGCTTATTTCTCAGGTACAAAGGTAAA 428
BSNT_01600___ 423 GTGGATTTTAGACAATGTGGAAGGCGCGAGAGAAAAAGCGGAAAAAGGCG 472
.|||||.|||||||||||.||.||.||..|.||.|||||.|||||.||||
BPUM_0883___g 429 ATGGATCTTAGACAATGTTGATGGTGCCCGTGAGAAAGCAGAAAATGGCG 478
BSNT_01600___ 473 AGCTGCTGTTTGGAACGATTGATACGTGGCTCATTTGGAAAATGTCAGGC 522
|..|.||||||||.||.||||||||.|||||.||||||||.|||.|||||
BPUM_0883___g 479 ACTTACTGTTTGGTACAATTGATACTTGGCTGATTTGGAAGATGACAGGC 528
BSNT_01600___ 523 GGAAAAGCGCATGTGACCGATTACTCCAATGCCTCAAGAACACTGATGTT 572
||.|||.|.||.||.||.||||||||.|||||.|||||||||.|.|||||
BPUM_0883___g 529 GGTAAATCACACGTCACAGATTACTCTAATGCGTCAAGAACATTAATGTT 578
BSNT_01600___ 573 TAATATTTACGATTTAAAATGGGACGATGAACTGCTCGACATTCTAGGCG 622
.||.|||||||||.|.||||||||.||.|||.|.||.||.||.||.||||
BPUM_0883___g 579 CAACATTTACGATCTGAAATGGGATGAAGAATTACTTGATATCCTTGGCG 628
BSNT_01600___ 623 TACCGAAATCCATGCTCCCTGAAGTGAAGCCGTCCTCTCATGTGTATGCG 672
|||||...||.|||||.||.||.|||||.||.||.||.||..|.||||..
BPUM_0883___g 629 TACCGGCTTCAATGCTTCCAGAGGTGAAACCATCTTCACACATTTATGGT 678
BSNT_01600___ 673 GAGACTGTTGATTATCACTTCTTCGGAAAAAATATCCCGATTGCGGGAGC 722
||.||....||.|||||||||||.||.|.||||||.||||||||.|||||
BPUM_0883___g 679 GAAACAACAGACTATCACTTCTTTGGCAGAAATATTCCGATTGCAGGAGC 728
BSNT_01600___ 723 GGCAGGCGACCAGCAGTCCGCATTGTTCGGCCAGGCATGCTTTGAAGAAG 772
.||.||.||.||||||.|.||.||.|||||.|||||.|||||||||||||
BPUM_0883___g 729 CGCGGGAGATCAGCAGGCTGCTTTATTCGGTCAGGCTTGCTTTGAAGAAG 778
BSNT_01600___ 773 GCATGGGGAAAAACACATACGGCACAGGATGTTTCATGCTGATGAATACC 822
|.||||.|||.||||||||.||.|||||||||||||||.||||||||||.
BPUM_0883___g 779 GAATGGCGAAGAACACATATGGTACAGGATGTTTCATGTTGATGAATACA 828
BSNT_01600___ 823 GGGGAAAAAGCAATTAAGTCCGAACATGGGCTTTTGACAACAATCGCTTG 872
|||||||||||.||||||||.||.|||||..|.||.||.||.||.||.||
BPUM_0883___g 829 GGGGAAAAAGCCATTAAGTCGGATCATGGTTTATTAACGACGATTGCATG 878
BSNT_01600___ 873 GGGCATTGACGGAAAAG-TGAACTATGCGTTAGAAGGAAGCATTTTTGTC 921
||||||||||||.|||| |||| |||||.|||||||||||.|||||.||.
BPUM_0883___g 879 GGGCATTGACGGCAAAGTTGAA-TATGCTTTAGAAGGAAGTATTTTCGTT 927
BSNT_01600___ 922 GCAGGCTCTGCCATCCAGTGGCTTAGAGACGGTTTGAGAATGTTCCAGGA 971
||.|||||.||.||.||.|||||..|.||.||..|.||||||||..|.||
BPUM_0883___g 928 GCTGGCTCAGCGATTCAATGGCTGCGTGATGGACTCAGAATGTTTAAAGA 977
BSNT_01600___ 972 TTCATCGCTA---AGCGAATCTTATGCAGAAAAAGTGGATTCAACTGACG 1018
.|||..| ||||||.||||||||||...|||.||.|||||.||.|
BPUM_0883___g 978 ---CTCGAAAGACAGCGAAGCTTATGCAGAGCGAGTTGAGTCAACAGATG 1024
BSNT_01600___ 1019 GCGTGTATGTCGTTCCAGCATTTGTCGGACTGGGAACGCCTTACTGGGAC 1068
||||.||.||||||||.|||||.||.||.||.||.||.||.||.|||||.
BPUM_0883___g 1025 GCGTATACGTCGTTCCGGCATTCGTTGGTCTAGGCACACCATATTGGGAT 1074
BSNT_01600___ 1069 AGTGATGTGCGCGGTTCGGTTTTCGGCCTGACAAGAGGGACAACAAAAGA 1118
||||||||..|.||..|.||.|||||..|.|||.|.||.||..|.|||||
BPUM_0883___g 1075 AGTGATGTCAGAGGCGCTGTATTCGGGTTAACACGCGGTACTTCTAAAGA 1124
BSNT_01600___ 1119 GCACTTTATCCGTGCGACACTGGAGTCATTGGCTTATCAGACAAAAGATG 1168
|||||||.|||||||.||..|.||.|||.|.||||||||.||.|||||||
BPUM_0883___g 1125 GCACTTTGTCCGTGCAACGTTAGAATCACTTGCTTATCAAACGAAAGATG 1174
BSNT_01600___ 1169 TGCTTGACGCAATGGAAGCAGATTCAAACATTTCATTAAAGACGCTTCGT 1218
||.|.||.||.||||||...||||||||||||||||||||.||..|.|||
BPUM_0883___g 1175 TGTTAGATGCGATGGAAAAGGATTCAAACATTTCATTAAAAACATTGCGT 1224
BSNT_01600___ 1219 GTAGATGGAGGAGCTGTGAAAAACAATTTCCTGATGCAGTTCCAAGGAGA 1268
||.|||||.||||||||.||.||..|||||.|.|||...||||||.|.||
BPUM_0883___g 1225 GTTGATGGCGGAGCTGTAAAGAATGATTTCTTAATGGGCTTCCAAAGTGA 1274
BSNT_01600___ 1269 CCTGTTGAATGTTCCTGTGGAGCGCCCGGAAATTAATGAAACGACTGCGC 1318
..|..||.||||.|||||.|||||.||.||||||||||||||.||.||.|
BPUM_0883___g 1275 TTTACTGGATGTGCCTGTAGAGCGTCCAGAAATTAATGAAACTACGGCAC 1324
BSNT_01600___ 1319 TTGGCGCGGCTTATTTGGCAGGTATCGCTGTGGGATTCTGGAAGGACCGT 1368
|.||.|||||.|||.|.||.||.||.||.||.||.||||||||.||||||
BPUM_0883___g 1325 TCGGTGCGGCCTATCTTGCGGGAATAGCAGTTGGCTTCTGGAACGACCGT 1374
BSNT_01600___ 1369 TCTGAAATCGCGAACCAGTGGAATCTGGATAAACGGTTTGAGCCTGAATT 1418
||.||.||.||.||.||.|||||.||.||.||.||.|||||.|||.|..|
BPUM_0883___g 1375 TCAGACATTGCAAAACAATGGAACCTTGACAAGCGCTTTGATCCTAAGAT 1424
BSNT_01600___ 1419 AGAAGAAGAAAAACGAAATGAGCT--GTATAAA--GGCTGGCAAAAAGCC 1464
.|||||||..|..|| ||| || .||||.| ||.|||.||||.||.
BPUM_0883___g 1425 GGAAGAAGGCAGCCG---TGA-CTCGTTATACAGCGGGTGGAAAAAGGCT 1470
BSNT_01600___ 1465 GTGAAAGCAGCTATGGCTTTTAAATAA 1491
||.|||||||||...|||||.||||||
BPUM_0883___g 1471 GTAAAAGCAGCTCAAGCTTTCAAATAA 1497
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