Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01599 and BPUM_0882

See Amino acid alignment / Visit BSNT_01599 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:06
# Commandline: needle
#    -asequence dna-align/BSNT_01599___glpF.1.24716.seq
#    -bsequence dna-align/BPUM_0882___glpF.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01599___glpF-BPUM_0882___glpF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01599___glpF-BPUM_0882___glpF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01599___glpF
# 2: BPUM_0882___glpF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 835
# Identity:     619/835 (74.1%)
# Similarity:   619/835 (74.1%)
# Gaps:          29/835 ( 3.5%)
# Score: 2237.5
# 
#
#=======================================

BSNT_01599___      1 ATGACAGCATTTTGGGGAGAAGTCATCGGTACGATGCTGCTTATCATTTT     50
                     ||||||.|||||||||||||||||.|.|||||.||||||||.||.|||||
BPUM_0882___g      1 ATGACACCATTTTGGGGAGAAGTCGTAGGTACAATGCTGCTCATTATTTT     50

BSNT_01599___     51 TGGTGCAGGTGTTTGTGCAGGTGTCAATTTAAAGAAATCGCTTTCATTCC    100
                     |||.|..||.||.|||||.|..||.||||||||||||||.||..|||..|
BPUM_0882___g     51 TGGAGGCGGCGTGTGTGCGGCAGTTAATTTAAAGAAATCACTCGCATATC    100

BSNT_01599___    101 AGTCTGGCTGGATTGTTGTTGTATTTGGATGGGGATTGGGTGTTGCCATG    150
                     |.||.||.||||||||..|.|..||.|||||||||||.|..||.||.||.
BPUM_0882___g    101 AATCCGGTTGGATTGTAATCGCTTTCGGATGGGGATTTGCAGTAGCTATT    150

BSNT_01599___    151 GCGGCATACGCGGTTGGCGGCATCAGCGGTGCCCATTTGAATCCGGCGCT    200
                     ||.|||||.||...|||.||.||||||||.||.|||||.||.||.||.||
BPUM_0882___g    151 GCAGCATATGCAACTGGTGGAATCAGCGGAGCGCATTTAAACCCCGCACT    200

BSNT_01599___    201 AACGATAGCGCTTGCATTTGTAGGAGATTTTCCTTGGAAAGAGGTTCCGG    250
                     .||.||.|.||||||..|.|.||||..||||||||||...||.|||||..
BPUM_0882___g    201 CACCATTGGGCTTGCGCTAGAAGGAAGTTTTCCTTGGGCTGATGTTCCAA    250

BSNT_01599___    251 TTTATATTGCGGCGCAAATGATCGGAGCGATCATCGGTGCGGTGATTATT    300
                     |.|||||||..|..||||||.|.||.||..|.||.||.||....|||.|.
BPUM_0882___g    251 TGTATATTGTTGGTCAAATGCTTGGCGCATTAATAGGGGCTACTATTGTC    300

BSNT_01599___    301 TATCTGCATTACCTCCCGCACTGGAAGTCAACGGATGATCCCGCTGCCAA    350
                     |.|.|.||||||.|.|||||||||||..||||.||||||||.|.|||.||
BPUM_0882___g    301 TTTTTACATTACTTACCGCACTGGAAAGCAACAGATGATCCAGGTGCAAA    350

BSNT_01599___    351 GCTGGGTGTTTTCTCAACAGGGCCCAGC-ATTCCGCATACATTTGCAAAC    399
                     .||.|||||.|||||||| .||.||.|| |||||||||||.|||||||||
BPUM_0882___g    351 ACTAGGTGTATTCTCAAC-TGGTCCTGCGATTCCGCATACTTTTGCAAAC    399

BSNT_01599___    400 GTTTTAAGCGAAGTGATTGGGACATTTGTCCTTGTACTTGGAATCTTGGC    449
                     ||..|.||.|||||.||.||.||||||||..|.||.||.||||||||.||
BPUM_0882___g    400 GTACTTAGTGAAGTCATCGGTACATTTGTATTGGTTCTAGGAATCTTAGC    449

BSNT_01599___    450 CATTGGGGCAAATCAATTTACAGAAGGACTTAATCCTTTAATCGTCGGTT    499
                     .|||||.||||||.|||||.||||.|||.|.|||||..|.||.||.||||
BPUM_0882___g    450 GATTGGTGCAAATAAATTTGCAGACGGAGTCAATCCGCTGATTGTTGGTT    499

BSNT_01599___    500 TCCTCATTGTAGCAATCGGTATTTCTCTGGGAGGCACCACCGGCTATGCT    549
                     ||.|.|||||.|||||.||..|||||.|.||.||.||.||.||.|||||.
BPUM_0882___g    500 TCTTAATTGTTGCAATTGGACTTTCTTTAGGTGGAACAACTGGTTATGCA    549

BSNT_01599___    550 ATCAATCCTGCACGTGACTTAGGTCCGCGGATAGCCCACGCTTTTCTT-C    598
                     ||.||.|||||.|||||.|||||||||.|.||.||.||.|| ..|||| |
BPUM_0882___g    550 ATTAACCCTGCTCGTGATTTAGGTCCGAGAATCGCGCATGC-GATCTTGC    598

BSNT_01599___    599 CAATTCCGGGGAAGGGCTCATCAAACTGGAAATACGCATGGGTTCCGGTA    648
                     |.|||||.|||||.|||.||||.||||||||.||.||.|||||.||.||.
BPUM_0882___g    599 CGATTCCAGGGAAAGGCCCATCGAACTGGAAGTATGCTTGGGTACCAGTC    648

BSNT_01599___    649 GTCGGCCCGATTTTAGGCGGATCATTCGGCGGTGTATTTTACAACGCTGC    698
                     ||.||.||.|||||||||||..||||.||||||||.||.|||||.||.||
BPUM_0882___g    649 GTTGGTCCAATTTTAGGCGGCGCATTTGGCGGTGTTTTCTACAATGCAGC    698

BSNT_01599___    699 ATTTAAAGGGCACATCA--CAAGCAGCTTCTGGATTGTAAGCGTTATATT    746
                     .|||||||.|.||.|||  |.|||  |||.|||||||||||||||||.||
BPUM_0882___g    699 CTTTAAAGCGAACGTCACTCCAGC--CTTTTGGATTGTAAGCGTTATTTT    746

BSNT_01599___    747 GGTTGTGGTATTGTTAGGACTCTATGTTTATACGAAATCATATTCTGCTA    796
                     |.|||||||||||||||||||||||||.|.||||||             |
BPUM_0882___g    747 GATTGTGGTATTGTTAGGACTCTATGTCTCTACGAA-------------A    783

BSNT_01599___    797 AAACATTATCAAAT--TCTAAAT----ATATTTAA    825
                     ||.||  |.|||||  |.|||||    .|||.|||
BPUM_0882___g    784 AACCA--AACAAATGCTGTAAATGAAAGTATGTAA    816


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_01599 and BPUM_0882

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
