Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01597 and BPUM_0880

See Amino acid alignment / Visit BSNT_01597 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:06
# Commandline: needle
#    -asequence dna-align/BSNT_01597___yhxA.1.24716.seq
#    -bsequence dna-align/BPUM_0880___bioA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01597___yhxA-BPUM_0880___bioA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01597___yhxA-BPUM_0880___bioA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01597___yhxA
# 2: BPUM_0880___bioA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1400
# Identity:     958/1400 (68.4%)
# Similarity:   958/1400 (68.4%)
# Gaps:         121/1400 ( 8.6%)
# Score: 3084.5
# 
#
#=======================================

BSNT_01597___      1 ATGGAAA-ACAT--TCAG---CAAAATCAGGGATTAAAGCAAAAAGATGA     44
                     |||.||| ||||  .|||   |||||||     ||.|.|| |||||||||
BPUM_0880___b      1 ATGAAAATACATGAGCAGGCTCAAAATC-----TTCAGGC-AAAAGATGA     44

BSNT_01597___     45 GCAATTTGTGTGGCATGCCAT---GAAGGGAGCGCATCAAGC--GGACAG     89
                     .||.||..|.|||||  ||||   .||||||      |||.|  ||||| 
BPUM_0880___b     45 TCAGTTGATCTGGCA--CCATATGAAAGGGA------CAAACAAGGACA-     85

BSNT_01597___     90 CCTGATAG--------CCCAGAAGGCCGAGGGGGCCTGGGTAACCGACAT    131
                      .|||.||        ..||..||||.||.||.||.|||||.||.||.||
BPUM_0880___b     86 -ATGAAAGTATGGTCATTCACGAGGCAGAAGGCGCATGGGTGACAGATAT    134

BSNT_01597___    132 AGACGGACGCCGCTATTTGGATGCGATGTCCGGTTTGTGGTGCGTCAACA    181
                     ..|.||....||||.|||.||.|.||||||.|||.|.|||||.||.||..
BPUM_0880___b    135 TCATGGGAATCGCTGTTTAGACGGGATGTCAGGTCTTTGGTGTGTAAATG    184

BSNT_01597___    182 TTGGTTACGGCAGAAAGGAGCTTGCGGAGGCTGCCTATGAGCAACTAAAG    231
                     |.||.||.|||||.||.||||||||.||.||.||.|||.|||||.|||||
BPUM_0880___b    185 TCGGATATGGCAGGAAAGAGCTTGCAGAAGCGGCGTATAAGCAATTAAAG    234

BSNT_01597___    232 GAGCTGCCTTACTACCCGTTAACGCAAAGTCACGCACCCGCAATTCAACT    281
                     ....||||||||||.|||.|.||.|||||.||||.|||.||.|||||.||
BPUM_0880___b    235 ACAATGCCTTACTATCCGCTCACACAAAGCCACGTACCGGCGATTCAGCT    284

BSNT_01597___    282 GGCGGAAAAGCTGAATGAATGGCTTGGCGGCGATTATGTTATCTTTTTTT    331
                     |||.|||||.||.|||||.|||||||||||.||||||||.|||||.||||
BPUM_0880___b    285 GGCTGAAAAACTAAATGAGTGGCTTGGCGGTGATTATGTCATCTTCTTTT    334

BSNT_01597___    332 CCAACAGCGGATCGGAAGCAAACGAAACTGCTTTTAAAATTGCCCGCCAG    381
                     |.||||||||.||.|||||.||.|||.|.||.||||||||.|||...||.
BPUM_0880___b    335 CTAACAGCGGTTCTGAAGCCAATGAAGCCGCATTTAAAATGGCCAAACAA    384

BSNT_01597___    382 TACCATCTGCAAAACGG--------CGACCACAGCCGTTATAAATTCATC    423
                     ||.|||..||||||.||        |.|..|||        |||||||||
BPUM_0880___b    385 TATCATGCGCAAAAAGGAGAGAGTACAAGGACA--------AAATTCATC    426

BSNT_01597___    424 TCAAGATATCGGGCATACCACGGCAATACATTGGGAGC-GCTCT--CAGC    470
                     ||..|.||||||.|.||.||||||||||||   |.||| |||||  |.||
BPUM_0880___b    427 TCTCGGTATCGGTCGTATCACGGCAATACA---GCAGCAGCTCTTGCCGC    473

BSNT_01597___    471 TACCGGACAGGCGCAGCGGAAATATAAATACGAGCCTTTGAGCCAAGGGT    520
                     .|||||.||.||||||||.|||||||||||.||.||.||..|.||.||.|
BPUM_0880___b    474 AACCGGTCAAGCGCAGCGTAAATATAAATATGAACCATTAGGTCAGGGTT    523

BSNT_01597___    521 TCCTGCATGCAGCTCCGCCAGATATATACCGGAATCCTGATGATGCAGAC    570
                     |..|.||||..||.|||||.|||||.||.||..|.|||||.|||..|||.
BPUM_0880___b    524 TTATTCATGTCGCACCGCCTGATATGTATCGTCACCCTGAGGATCAAGAG    573

BSNT_01597___    571 ACGCTTGAAAGCGCAAATGAAATCGACC--GCATCATGACATGGGAATTA    618
                     |..||.|.|||.|||...|.|||.||.|  ||  ||||||.||||||.||
BPUM_0880___b    574 AATCTGGCAAGTGCAGCAGCAATAGATCAAGC--CATGACGTGGGAACTA    621

BSNT_01597___    619 AGCGAAACGATTGCCGGGGTCATTATGGAGCCCATCATTACAGGCGGAGG    668
                     ||.||.|||||.||.|||||||||||||||||.|||||||||||||||||
BPUM_0880___b    622 AGTGAGACGATAGCTGGGGTCATTATGGAGCCGATCATTACAGGCGGAGG    671

BSNT_01597___    669 CATCCTAATGCCGCCGGACGGATATATGAAAAAGGTGGAGGACATTTG--    716
                     .||||||||||||||..|.||.|||.||||.|||||..|.|||||.||  
BPUM_0880___b    672 TATCCTAATGCCGCCAAAAGGGTATTTGAAGAAGGTCAAAGACATCTGTG    721

BSNT_01597___    717 ---CCGGCGCCACGGAGCCCTTTTGATTTGCGATGAAGTGATCTGCGGGT    763
                        |     |||.|||||.|||.|.|||...||||||||.||||||||.|
BPUM_0880___b    722 AATC-----CCATGGAGCGCTTCTCATTGTAGATGAAGTCATCTGCGGAT    766

BSNT_01597___    764 TTGGACGGACAGGCGAGCCGTTCGGGTTTATGCACTACGGTGTGAAGCCT    813
                     ||||.||||||||..|||.|||.||.||||||||..|.|..||.|||||.
BPUM_0880___b    767 TTGGCCGGACAGGGAAGCGGTTTGGTTTTATGCATGAGGAAGTAAAGCCG    816

BSNT_01597___    814 GATATCATTACGATGGCAAAGGGAATCACAAGCGCGTATCTGCCATTGTC    863
                     |||||.||.||.||||||||.||.||||||||||..|||.|.||..|.||
BPUM_0880___b    817 GATATTATCACTATGGCAAAAGGGATCACAAGCGGCTATTTACCGCTTTC    866

BSNT_01597___    864 AGCGAC-TGCTATTAAACGGGACATTTTCGAAGCGTAT-CAGGGGGAAGC    911
                     .||.|| || |.|.|||||.||.||.|..|||||.||| || ||.||||.
BPUM_0880___b    867 TGCAACGTG-TGTGAAACGAGAAATCTATGAAGCCTATGCA-GGAGAAGA    914

BSNT_01597___    912 TCCTTATGACCGTTTCCGCCACGTGAACACGTTCGGCGGAAGCCCGGCTG    961
                     |.|.||||||.|..|.|||||.|||||.||.||.|||||....||.|||.
BPUM_0880___b    915 TACGTATGACAGACTGCGCCATGTGAATACATTTGGCGGTCATCCTGCTT    964

BSNT_01597___    962 CCTGTGCCTTGGC-GTTGAAAAACCTGCAAATTATGGAGGACGAACTGCT   1010
                     |||||||..|||| .||| ..|||||..|.||.|||||..||||.|    
BPUM_0880___b    965 CCTGTGCGGTGGCACTTG-CCAACCTAGAGATAATGGAAAACGAGC----   1009

BSNT_01597___   1011 GATTCAG-----CGATCCCGCGA-TCTTG---GAGCAAAGCTTTTAGGTG   1051
                      |.|.||     ||.| |||.|| .||.|   |||..|.||||..|.|| 
BPUM_0880___b   1010 -AATTAGTGGAACGGT-CCGAGACGCTCGGCCGAGATATGCTTGAACGT-   1056

BSNT_01597___   1052 AGCTCCAAGCTCTGAGAGAACACCCGGCAGTCGGGGATGTTAGAGGAAAA   1101
                       .|.||||...|.|.|||||||||....|||||.|||||.|||||||||
BPUM_0880___b   1057 --TTGCAAGAGTTAAAAGAACACCCATTTGTCGGAGATGTCAGAGGAAAA   1104

BSNT_01597___   1102 GGGCTGCTGATCGGAATCGAACTCGTCAAAGATAAATTGACTAAAGAGCC   1151
                     ||..|||||.|.||.||.||.||.||..|||||.||...||.||..|.||
BPUM_0880___b   1105 GGTTTGCTGTTTGGCATTGAGCTTGTTCAAGATCAACAAACCAAGAAACC   1154

BSNT_01597___   1152 GGCTG------ATGCCGCCAAAGTAAACCAAGTGGTTGCGGCGTGCAAAG   1195
                     .||||      |||.|      ||....|||.||.||||.|..||.|||.
BPUM_0880___b   1155 AGCTGAACCTCATGTC------GTTGGTCAATTGATTGCTGAATGTAAAA   1198

BSNT_01597___   1196 AAAAAGGGCTGATCATCGGCAAAAACGGCGATACAGTCGCCGGCTACAAC   1245
                     ||...||||||||.|||||.|||||.||.||||||||.|||||||..||.
BPUM_0880___b   1199 AACGGGGGCTGATTATCGGGAAAAATGGGGATACAGTGGCCGGCTTTAAT   1248

BSNT_01597___   1246 AACGTCATCCAGCTTGCGCCGCCATTTTGCCTG------ACAGAAGAGGA   1289
                     |||||...|||||||||.|||||      .|||      |||||.||.||
BPUM_0880___b   1249 AACGTTGCCCAGCTTGCACCGCC------GCTGAATATAACAGATGATGA   1292

BSNT_01597___   1290 CCTTTCCTTTATCGTGAAAACGGTGAAAGAAAGC-TTTCAAACGATATAA   1338
                     |...||.||||||.|.||.||..|.||||||||| |..||.| |.||||.
BPUM_0880___b   1293 CGCCTCATTTATCATCAATACATTAAAAGAAAGCATGGCACA-GCTATAG   1341


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